NO27G01400, NO27G01400 (gene) Nannochloropsis oceanica

Overview
NameNO27G01400
Unique NameNO27G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2536
Alignment locationchr27:457249..459784 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:457249..459784 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: INTERPRO
TermDefinition
IPR023799RbfA_dom_sf
IPR000238RbfA
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01400.1NO27G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633723gene_9939Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|216838gene_8732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01400.1NO27G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01400 ID=NO27G01400|Name=NO27G01400|organism=Nannochloropsis oceanica|type=gene|length=2536bp
ATGCTACGTCGCTTACTGCTTTCGGCGGCCCCAGTCAGCTCCAGAAGGAG
AAGTGCCAAGACTCTTTCTCCTGCAGGAGCAACAGCGGCAAGGGCGTCTG
GGGCAGGGCGATTACCTTATTTATCTCCATCTCCCTTGTCCCCTCTGGTT
GTGGTGCCTCGACGGGGATTGCGCTCGCGAGGTGGAAGAGGAGGGGCTGC
AGGAGCAGGAGGATCGAAGACAACGTCATTCCCCGCTCCTTCGTCCCTCC
GTCCAGATGTTCAGATGGAAGACAAGAAGGAGGTGTCGGAGGAGGAGGAG
GAAGGGAAGGAGGCTCTCCCCTCGGCATCCAGGAATAGGACAAGCAAAGT
GAAGCTGTCCCACGCGCGAGAGCAATGGGAACAGCAACAACGAGAAGCCG
CTTCCTCCTTCTCCTCTTCGCTAGACGAGGATGAAGAGGAGGATGAGGAG
GACGAGGAGGACGAGGGATGGATGGAGGAGTTGGACGAATGCATTGAGGA
CGAGGAGGAGGTGGAAATGAACATGCTGGTCCGCTCCCTTCCGGTTGAGA
GAGGGAGGGAGGCAGGAATGGTACGGAACCTCCCCGATCGTCTGCCACAG
GGCAGCGGGGACGAAGGAGTGGGCTTTGTGCTTGGGGAGGGAGGGAGGGG
GGAGGAGGAGGCGAGGAAGAAGGCTGCCTTATGGGAGCTGGTGGACGACC
GAGGGGTGCAGGAGGAGGAGGATCGATgtagggaaaaagggagagaggga
gggagggaatgagggagtgtgatgtatatatcgatgtggcgtgtcttttg
tcctgtatataagctacttttgcgactcaccctttcctccctcccttcct
ccctccctccttccctccccccctccctcctgacacagGGCGCCGTCGTG
TCGGTCTGACCCGCACGAGTCGCGAGAGCGTCTTTGAGGCCATGCGCCAG
CGGCTGCAGCAAGACGAGAAGACCGCGGCCCCGTCCAAGCGCCAGCTCCG
CCTGTCCACCGgtactgaaaccgccctccctccctccctccctccctccc
tcccgtcctctcatacacttacctttccctccccccttcccccccctcca
ttcctcctttgtccccccagCTATCTGGACGGTAGTGTCGGACCTCTTCT
ACAAGGACGGGATCTGTCCCGCAAAGAAGCGCGACGGCAGCCCCCTCGTG
GACATCACCGAGGTCAACATGAGCATGgttcgtccccctccctccctccc
tccctcccttccacgcacaccaactcgctttcccatctgtgcaccttatc
tttctctcccttctcaacgacctccatcgctcttccatccattcgcccct
ccctccttctctctctccttccctgcctcccccccccttcagGACCTGCG
CCACGCTGTCATCTGGTGGACGCCAGCCGTCCTTCATCACGATCCTGCCC
CCCCTCCTCCCTCCTCCACTTCTTCCCTTTTCCCTCCCTCCTCCTCCTCT
TCCTCCCGGCCTTCCCTCCCCTCCTGGGATGCCGCCCTGCATCTCCGCAA
GGCATTGGTCCGGGAAGTGCAAGCTTCTCTGGATAAAGGGACGAAAAAAA
TACGCTTTGAGTGCTGCCGCCGCCTCAAGCTCAAGgtacggcgcatccct
gcccgtacttcatgccctccccctcttcattgctcccccttcgtcctttc
tttctcctctccctcctcccctccctcccttcctcccttaatctccccac
atgcccgcgtcttgaagctcgtcgaatcgacataactcgtgtgtcctctt
tttcactccctccctccctccctcctctcctcctaccctccttccctcta
acagCGCATGCCGGCGTTGGAGTTCCGCGTGGACCAGCTTGTGGAAGGCG
CCCGGAAGGTCTCTCCCCTACTGGCGGGGTTGGAGGAGGGAGGGGGGAGG
GAGGGAGGCCGGGGGCGAGGGCGGGTAAACAGGGCTTGAGAATGCGGTAG
GGAGGGTAGGGAGTGAGGGGGAGTCGAGGGGAGGGGGCGTAGCCCCAGCA
ATTTATGTACATAAACATACGTACGTCTATATATATATATAGAGAGAGAG
AGAAAGAGAGAGAGAGAGAGAGAGACATACACACACATTGGCAGTAAGAC
ACGAAAGTCGAGGCGCTGTTTGACTGCTGCTGCTTGAGTGCTTGACTGCT
GCTGCTTGACTGATGTTGTTATCGTGTCTGCTGGAGAAGCCTCACGCCGA
CATCAGGCCTCGCCCGAGCAAGGAAGGGAGGGGGGATGGGCCCCGAGGGG
CGGTAGGATGGCAGGAGGGAGGAAGGCACAGGCAAAAGGCAGTGAGATCG
CGAGGCTAGAGACCGAGGCAAAGGTATTGAGATCGAGAGGCGATGAGATT
AATAGCACGATGCAAAGGCCGAATCAAAAGCAGAGGGAAGAGGCGAAAGG
CAGAGTCATCAAAAGCAGCGGCAGTGGCATCAAGGACCAAAGCAGAGAGC
AACAAAAACATGATCGAGGCCACGCCGACTCCTGCC
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protein sequence of NO27G01400.1

>NO27G01400.1-protein ID=NO27G01400.1-protein|Name=NO27G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLRRLLLSAAPVSSRRRSAKTLSPAGATAARASGAGRLPYLSPSPLSPLV
VVPRRGLRSRGGRGGAAGAGGSKTTSFPAPSSLRPDVQMEDKKEVSEEEE
EGKEALPSASRNRTSKVKLSHAREQWEQQQREAASSFSSSLDEDEEEDEE
DEEDEGWMEELDECIEDEEEVEMNMLVRSLPVERGREAGMVRNLPDRLPQ
GSGDEGVGFVLGEGGRGEEEARKKAALWELVDDRGVQEEEDRWRRRVGLT
RTSRESVFEAMRQRLQQDEKTAAPSKRQLRLSTAIWTVVSDLFYKDGICP
AKKRDGSPLVDITEVNMSMDLRHAVIWWTPAVLHHDPAPPPPSSTSSLFP
PSSSSSSRPSLPSWDAALHLRKALVREVQASLDKGTKKIRFECCRRLKLK
RMPALEFRVDQLVEGARKVSPLLAGLEEGGGREGGRGRGRVNRA*
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Synonyms
Publications