NO27G01390, NO27G01390 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G01390
Unique Name	NO27G01390
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4527
Alignment location	chr27:453382..457908 -

Link to JBrowse

Properties


Property Name	Value
Description	Queuine tRNA-ribosyltransferase catalytic subunit 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:453382..457908 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006400	tRNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0016763	transferase activity, transferring pentosyl groups

Vocabulary: **INTERPRO**
Term	Definition
IPR036511	TGT-like_sf
IPR002616	tRNA_ribo_trans-like

Homology

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: CEL93160.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 561.2 bits (1445), Expect = 3.700e-156
Identity = 284/442 (64.25%), Postives = 329/442 (74.43%), Query Frame = 0

Query:  139 SMTYLEERLKELPTPTYPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGD-DGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSP-REHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            S+T++E        P+YP FAF        G  A  CG+L TPHGD+ETP F+FCGTKA+VKGLTP+QLR+AGTQI+LSNTYHLL+ PGSELV++ GGLQEFTG+ GPMLTDSGGYQIFSMGHGSVS+EIKG+R    E                    +SL+ I EE A FRSY DGS KTL+PESSI  Q+ LGADIIL LDECTPF+VEK YTE SM RSHRW +RSL EF R D   +Q+LYGI+QGG  P LR  ST FVN   FFG+AIGGSLG ++  M+ +VALTAK LR+DRPIHLLGIGGVRDIFHGVR GID+FDCVHPTR+GRHG ALVR  +WD   S     S   +EH++L K+ FK D RPID SCGC TC+N+SRAY+HHL+KA E LGG+LVSLHNVFFMNRLM  IR AI +GTLDEE  KWV
Sbjct:    5 SLTHIESVGLPSDAPSYPFFAFDIVHESTDGSDAC-CGVLRTPHGDVETPNFVFCGTKASVKGLTPEQLREAGTQIVLSNTYHLLVWPGSELVEDMGGLQEFTGFRGPMLTDSGGYQIFSMGHGSVSSEIKGQRTLPDE-------------------MRSLIDISEEGATFRSYWDGSVKTLTPESSILVQKQLGADIILVLDECTPFNVEKSYTESSMRRSHRWGLRSLQEFSRLDCQQRQALYGIVQGGTCPSLRDESTHFVNTTPFFGSAIGGSLGADRATMHSVVALTAKSLRRDRPIHLLGIGGVRDIFHGVRHGIDTFDCVHPTRLGRHGGALVRRDFWDTDGSGGGSRSDKVKEHINLKKSPFKRDSRPIDASCGCYTCRNFSRAYLHHLLKAGEQLGGTLVSLHNVFFMNRLMRDIRSAIRSGTLDEERSKWV 426

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: WP_085783630.1 (tRNA guanosine(34) transglycosylase Tgt [Candidatus Nucleicultrix amoebiphila] >ARN84264.1 queuine tRNA-ribosyltransferase [Candidatus Nucleicultrix amoebiphila FS5])

HSP 1 Score: 504.6 bits (1298), Expect = 4.100e-139
Identity = 244/425 (57.41%), Postives = 305/425 (71.76%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWVR 580
            YP F+F+T   D   K  A+   L TPHG + TP FIFC TKA +KGLTP Q+++AGT+IILSNTYHL+LQPG + V+ +GGL  F GW GPMLTDSGG+QIFS+GHGSV+NEIKGKR   +                    QK+LLKI EE A+F+SY+DG+  TL+PESSIE QR LGAD+I+ LDECTPFHV+K YTE+SM  +HRW +RSL EF R + G+Q++YGI+QGGVYPDLR ++ AFVN H FFG A+GGSLG  K QM ++V     ++   RP+HLLGIGG+ DIF+GVR+GID+FDCVHPTR+ RHG ALVR  +W + D S        EH+ L  +RFK D  PID SC C TC+ +SRAY+HHLIKA ELL    +++HNV FMNRLM AIR AI    L+EE+K W++
Sbjct:    5 YPRFSFQTQYQDKFSK--AKVATLVTPHGAVTTPNFIFCATKAAIKGLTPAQMKEAGTEIILSNTYHLMLQPGGKRVERRGGLHRFMGWDGPMLTDSGGFQIFSLGHGSVANEIKGKRLTHR--------------------QKTLLKISEEGAVFKSYLDGALHTLTPESSIEIQRQLGADLIVVLDECTPFHVDKSYTEKSMHLTHRWGLRSLEEFKRTNSGQQAIYGIVQGGVYPDLRKIAAAFVNSHPFFGIAVGGSLGATKEQMAEVVNSVMNEISPQRPVHLLGIGGISDIFNGVREGIDTFDCVHPTRLARHGGALVRPDFWLKNDGSGG------EHISLKGSRFKDDDLPIDESCPCSTCKTFSRAYLHHLIKAQELLVYQALTIHNVTFMNRLMRAIRTAIIENRLEEEQKNWMQ 401

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: WP_062140990.1 (tRNA guanosine(34) transglycosylase Tgt [Caedimonas varicaedens] >GAO98774.1 queuine tRNA-ribosyltransferase [Caedimonas varicaedens])

HSP 1 Score: 503.4 bits (1295), Expect = 9.100e-139
Identity = 243/423 (57.45%), Postives = 302/423 (71.39%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKW 578
            YP F+F    T  S  + AR GLL TPHG +ETPAFIFC TK  +KG  P++++ AGTQIILSNTYH++LQPGSELV++ GGL +F GW GPMLTDSGGYQIFS+GHGSV++EIKGKR   +                     K++LKI EE A F+SY++G    L+PE S+E QR LGAD+I+ LDECTPFHV+K YTE SM  SHRW +RSL EF RG+DG+Q+LYGIIQGG+Y DLR     FVN H FFG A+GGSLG +K QM+DIV LT K L  +RP+HLLGIGG+ DIF+GV QGID+FDCVHPTR+ RHG ALV A +W   +          EH++L    ++ D RPID SCGC +CQN+SRAY+HHL+KA E+L    +++HNV+FMN L+  IR AI   TLD ++KKW
Sbjct:    4 YPKFSF--NITHRSAVSGARAGLLKTPHGTIETPAFIFCATKGAIKGAFPREMKAAGTQIILSNTYHMMLQPGSELVEKMGGLHKFIGWDGPMLTDSGGYQIFSLGHGSVASEIKGKRVTHR--------------------PKTMLKITEEGARFKSYINGQIFLLTPERSLEIQRQLGADLIVVLDECTPFHVDKSYTECSMHLSHRWALRSLAEFQRGNDGRQALYGIIQGGIYEDLRRQGAEFVNHHPFFGHAVGGSLGASKEQMHDIVGLTLKMLDPERPVHLLGIGGISDIFNGVEQGIDTFDCVHPTRLARHGGALVTADHWMRYEGKGG------EHINLRNKIYREDSRPIDESCGCHSCQNFSRAYLHHLLKAQEMLALQALTIHNVYFMNELLKNIREAIRTDTLDIQKKKW 398

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: OJX03242.1 (tRNA guanosine(34) transglycosylase Tgt [Caedibacter sp. 38-128])

HSP 1 Score: 502.3 bits (1292), Expect = 2.000e-138
Identity = 244/424 (57.55%), Postives = 304/424 (71.70%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            YPNF F+   T  + K  AR G L TP G +ETPAFIFC TKA +KG TP+Q+ +A TQIILSNTYHL+LQPG E+++ QGGL  F GW+ PMLTDSGG+QIFS+GHGSV++EIKGKR   +                     K+LLKI EE A F+SY+DG    L+PE SI+ QR LGAD+I+ LDECTPFHV+K YT+ SM+ SHRW +RSL EF R D+ +Q+LYGIIQGGVY DLR  S+ FVN H+FFG A+GGSLG +K QM+DIVALT   L  +RP+HLLGIGGV DIF+GVRQGID+FDCVHPTR+ RHG ALV+  +W + D          EH++L  A F+ D +PID +C C TC+ +SR+Y+HHL+KA E+L    +++HN+ FMNRL+ AIR AI    LDEEEK WV
Sbjct:    4 YPNFQFEIHKTSKNSK--ARLGRLVTPRGIVETPAFIFCATKAAIKGATPQQIDEANTQIILSNTYHLMLQPGGEIIERQGGLHRFMGWNKPMLTDSGGFQIFSLGHGSVASEIKGKRLTKR--------------------PKTLLKITEEGAQFKSYIDGRMHLLTPERSIQVQRQLGADLIVVLDECTPFHVDKIYTQRSMQLSHRWALRSLAEFQRTDNQRQALYGIIQGGVYDDLRKESSQFVNDHSFFGHAVGGSLGASKDQMHDIVALTMSLLNPERPVHLLGIGGVSDIFNGVRQGIDTFDCVHPTRLARHGGALVQPSFWHKNDGKGG------EHINLRNAHFREDSKPIDETCPCATCKTFSRSYLHHLLKAQEILALQAITIHNIAFMNRLLRAIREAISLDQLDEEEKNWV 399

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: OJX09529.1 (tRNA guanosine(34) transglycosylase Tgt [Caedibacter sp. 37-49])

HSP 1 Score: 500.4 bits (1287), Expect = 7.700e-138
Identity = 241/424 (56.84%), Postives = 301/424 (70.99%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            YPNF F      PS  + AR G L TPHG + TPAFIFC TKA +KG TP Q+ +  TQIILSNTYHL+LQPG E++++QGGL  F GW+ PMLTDSGG+QIFS+GHGSV++EIKGKR   +                     K+LLKI EE A F+SY+DG    L+PE SI+ QR LGAD+I+ LDECTPFHV+K YT+ SM+ SHRW +RSL EF R D+ KQ+LYGIIQGGVY DLR+ S+ FVN   FFG A+GGSLG +K QM+DIVALT   L  +RP+HLLGIGGV DIF+GVRQGID+FDCVHPTR+ RHG AL++  +WD  D          EH++L  ARF+ D +PID +C C TC+ +SR+Y+HHL++A E+L    +++HN+ FMNRL+ AIR AI    L+ EEK WV
Sbjct:    4 YPNFQF--DILKPSHNSKARLGRLMTPHGIVNTPAFIFCATKAAIKGATPNQVNEVDTQIILSNTYHLMLQPGGEIIEKQGGLHRFMGWNKPMLTDSGGFQIFSLGHGSVASEIKGKRLTTR--------------------PKTLLKITEEGAKFKSYIDGRMHLLTPERSIQVQRQLGADLIVVLDECTPFHVDKTYTQRSMQLSHRWALRSLSEFQRTDNQKQALYGIIQGGVYTDLRSESSKFVNDQPFFGHAVGGSLGASKEQMHDIVALTMSLLNPERPVHLLGIGGVSDIFNGVRQGIDTFDCVHPTRLARHGGALIQPSFWDNEDGQGG------EHINLRNARFREDSKPIDETCPCPTCKTFSRSYLHHLLRAQEILALQAITIHNISFMNRLLTAIREAIAQDQLESEEKNWV 399

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: OJV13213.1 (tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium 33-17])

HSP 1 Score: 499.6 bits (1285), Expect = 1.300e-137
Identity = 245/425 (57.65%), Postives = 302/425 (71.06%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWVR 580
            YPNF F+ T  DP   ++AR GLL TPHG +ETP FIFC TKA++KG+ P+ + +A TQIILSNTYHL+LQPGSE+V++ GGL +  GW+GPM TDSGGYQIFS+GHGSV++EIKGKR   +                     K+LLKI EE A F+SYVDGS   L+PE SI+ QR LGAD+I+ LDECTPFHV+K YT +SM  SHRW +RSL EF R DD  Q+LYGIIQGGVY DLR  S+ FVN H FF  AIGGSLG +K QM++IV      L KDRP+HLLGIGG+ DIF+G   GID+FDCVHPTR+ RHG ALV A   D     S+      EH+++   ++K D RPID +C C+ C N+SR YIHHL +A E+LG  L+++HNVFFMNRL+ A+R+AI +GTL  E KKW R
Sbjct:    2 YPNFKFEVTYNDPD--SSARTGLLHTPHGVVETPNFIFCATKASIKGVMPQDMLEANTQIILSNTYHLMLQPGSEVVKKLGGLHKMMGWNGPMFTDSGGYQIFSLGHGSVASEIKGKRNGNR--------------------PKTLLKITEEGARFKSYVDGSYHMLTPEKSIQIQRDLGADLIVVLDECTPFHVDKAYTAKSMRMSHRWALRSLEEFKRTDDHSQALYGIIQGGVYTDLRKESSDFVNNHDFFAHAIGGSLGASKDQMHEIVGTAMSMLSKDRPVHLLGIGGISDIFNGAEYGIDTFDCVHPTRLARHGGALVPAELKDRQGDEST-----TEHLNIRNQKYKMDDRPIDDTCECKVCLNFSRGYIHHLFRAQEMLGMQLLTIHNVFFMNRLLKAVRKAIKSGTLRVERKKWTR 399

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: EKE10432.1 (hypothetical protein ACD_16C00035G0006 [uncultured bacterium] >OFW68235.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium GWC2_42_16] >OFW74726.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium GWA2_41_27] >OFW85028.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_100] >OFW85657.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RBG_16_42_14] >OFW92498.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13] >OFW93140.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_30] >OFX00472.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPLOWO2_02_42_7] >OFX04056.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_43_54] >OFX06722.1 tRNA guanosine(34) transglycosylase Tgt [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_42_29])

HSP 1 Score: 496.1 bits (1276), Expect = 1.500e-136
Identity = 244/421 (57.96%), Postives = 299/421 (71.02%), Query Frame = 0

Query:  158 FAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            F F+ T   PS K  AR G L+TPHG +ETPAFIFC TKA +KG TP  +    TQIILSNTYHL+LQPG+ELV + GGL +F GW+GPMLTDSGG+QIFS+GHGSV+ E+KG+RR+ +                     KSLL I E+ A F+SY+DG    L+PE SI+ Q+ LGAD+I+ LDECTPFHV+K YTE+SM  SHRW  RSL EF RGD   Q+LYGI+QGGVYPDLR +S  FVN   FFG AIGGSLG +K QM +++ +  + L   RPIHLLGIGG+ DIF+GVRQGID+FDCVHPTR+ RHG ALV    W+ +  SS       EH++L  +RF+ D RPID SC C TC+  SRAY+HHL+KA ELL    ++ HNV FMNRL++ IR+AI AG+LDEE KKWV
Sbjct:    6 FNFEITKESPSSK--ARLGRLTTPHGIVETPAFIFCATKAAIKGATPDDMWREKTQIILSNTYHLMLQPGAELVAKMGGLHKFMGWNGPMLTDSGGFQIFSLGHGSVAEEVKGRRRSSR--------------------PKSLLSITEDGATFKSYLDGKTHVLTPEKSIQIQQDLGADLIVVLDECTPFHVDKTYTEKSMHMSHRWAERSLKEFQRGDPDHQALYGIVQGGVYPDLRKISADFVNNLPFFGHAIGGSLGADKAQMAEVIEMAIEPLDPQRPIHLLGIGGISDIFYGVRQGIDTFDCVHPTRLARHGGALVPPFVWETLGESSKG----HEHMNLRNSRFREDERPIDESCDCHTCKTLSRAYLHHLLKARELLALKALTSHNVHFMNRLLSNIRKAIAAGSLDEELKKWV 400

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: CBJ25973.1 (similar to queuine tRNA ribosyltransferase, putative [Ectocarpus siliculosus])

HSP 1 Score: 494.6 bits (1272), Expect = 4.200e-136
Identity = 256/476 (53.78%), Postives = 315/476 (66.18%), Query Frame = 0

Query:  154 TYPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSS--------------------------------------------------PREHVDLSKARFKHDPRPIDTSCGCETCQ-NYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            +YPNF+F T  ++    T AR G +STPHG ++TPAFIFC TKA +KGL+ + +++ G+QIILSNTYHLL+QPG E++++ GGLQ+ T W GPMLTDSGGYQIFSMGHGSV NEIKG+R              G EGG +  +  SL+ I E+ A F+SY D S K+L+PE SIE QR LGAD+++ LDECTPFHV+K YT+ SM R+HRW MRSL EFI GDDG Q+LYGIIQGGVYPDLR  +  FVN   FFG A+GGSLG +K  M+ +V+ T   +R+DRP+HLLGIGG+ DIFHGVRQG+D+FDCVHPTR+GRHG ALV+A +W        XX                                                    PREHV+L K R++ D R ID  CGC TC+  Y+RAYI+HL +A ELLGG LVS HNVFFMN LM +IR AI  G L EEE KW+
Sbjct:    4 SYPNFSF-TVESECQEGTKARTGTVSTPHGLVQTPAFIFCATKAAIKGLSAETMKECGSQIILSNTYHLLVQPGGEMIEKMGGLQKATRWEGPMLTDSGGYQIFSMGHGSVGNEIKGRR--------------GAEGGAE--FAPSLVSISEKGARFKSYYDCSIKSLTPERSIEIQRQLGADLVVVLDECTPFHVDKDYTKSSMHRTHRWAMRSLREFIDGDDGTQALYGIIQGGVYPDLRNEAVEFVNKAPFFGIAVGGSLGADKATMHQVVSHTMANVRRDRPVHLLGIGGIADIFHGVRQGVDTFDCVHPTRLGRHGGALVKASFWTREQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPVVPREHVNLLKGRYREDHRVIDEDCGCPTCRGGYTRAYINHLGRAGELLGGMLVSQHNVFFMNELMTSIRTAIAEGRLAEEEDKWL 462

[Close]

BLAST of NO27G01390 vs. NCBI_GenBank
Match: AIL12988.1 (queuine tRNA-ribosyltransferase [Candidatus Paracaedimonas acanthamoebae])

HSP 1 Score: 494.6 bits (1272), Expect = 4.200e-136
Identity = 238/423 (56.26%), Postives = 301/423 (71.16%), Query Frame = 0

Query:  155 YPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKW 578
            YPNF F+   T  + K  AR G L TPHG ++TPAFIFC TKA +KG TP+Q+ +A TQIILSNTYHL+LQPG ++++ QGGL  F GW+ PMLTDSGG+QIFS+GHGSV++EIKGKR   +                     K+LLKI EE A F+SY+DG    L+PE SI+ QR LGAD+I+ LDECTPFHV+K YT+ SM+ SHRW +RSL EF R D+ +Q+LYGIIQGGVY DLR  S  FVN H+FFG A+GGSLG +K QM+ IV LT   L   RP+HLLGIGG+ DIF+GVRQGID+FDCVHPTR+ RHG ALV+  +W E D +        EH++L  A F+ D +PID +C C TC+ +SR+Y+HHL++A E+L    +++HN+ FMNRL+ AIRRAI    L+ EEK W
Sbjct:    4 YPNFQFEIHKTSKNSK--ARLGRLVTPHGSVDTPAFIFCATKAAIKGATPQQINEADTQIILSNTYHLMLQPGGDIIERQGGLHRFMGWNKPMLTDSGGFQIFSLGHGSVASEIKGKRLTNR--------------------PKTLLKITEEGAQFKSYIDGCMHLLTPERSIQVQRQLGADLIVVLDECTPFHVDKVYTQRSMQLSHRWALRSLAEFQRTDNQQQALYGIIQGGVYDDLRKESAQFVNDHSFFGHAVGGSLGASKAQMHGIVELTMSLLDPARPVHLLGIGGISDIFNGVRQGIDTFDCVHPTRLARHGGALVQPSFWYENDGNGG------EHINLRNAHFREDSKPIDETCLCSTCKTFSRSYLHHLLRAQEILALQAITIHNISFMNRLLTAIRRAISLDILETEEKNW 398

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BLAST of NO27G01390 vs. NCBI_GenBank
Match: WP_010298363.1 (tRNA guanosine(34) transglycosylase Tgt [Candidatus Odyssella thessalonicensis])

HSP 1 Score: 491.5 bits (1264), Expect = 3.600e-135
Identity = 236/419 (56.32%), Postives = 298/419 (71.12%), Query Frame = 0

Query:  160 FKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVKGLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTDSGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSXXSSPREHVDLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLDEEEKKWV 579
            F  T   P     AR G L TPHG +ETPAFIFC TKA +KG+TP+Q++  GTQ ILSNTYHL+LQPGSE++Q+ GGL  F GW GPMLTDSGG+QIFS+GHGSV+ EIKG+R + +                     +++LKI EE A F+SY++G    L+PE S++ QR LG D ++ LDECTPFHV+K+YT  SM  SHRW +RSL EF R DDG Q LYGI+QGGVY DLR  +  FVN   FFG A+GGSLG +K+QMYD+VA+T + LR+DRP+HLLGIGGV+DIF+GVR GID+FDCVHPTR+ RHG ALVR  +              REH+ L+ +++K D  PI+  C C +CQNYS+AY+HHL+KA ELL  +L++LHNV FMNRL+AA+R+ I   TLD  EK+WV
Sbjct:    4 FSFTYHRPDPHQRARLGRLETPHGTVETPAFIFCATKAAIKGVTPEQMKAEGTQFILSNTYHLMLQPGSEIIQKAGGLHRFMGWRGPMLTDSGGFQIFSLGHGSVAEEIKGRRTSSR--------------------PRTMLKITEEGAKFKSYINGQTYLLTPERSVQVQRELGPDFVVVLDECTPFHVDKRYTTRSMHMSHRWAIRSLEEFRRHDDGTQKLYGILQGGVYEDLRLEACEFVNNQDFFGHAVGGSLGASKSQMYDVVAMTMENLREDRPVHLLGIGGVQDIFNGVRHGIDTFDCVHPTRLARHGGALVRPCH---------NPKPNREHIVLTNSQYKQDYSPIEPDCTCHSCQNYSKAYLHHLLKAQELLAYTLITLHNVNFMNRLLAAVRQGIATKTLDAVEKEWV 393

The following BLAST results are available for this feature:

BLAST of NO27G01390 vs. NCBI_GenBank

BLAST of NO27G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
CEL93160.1	3.700e-156	64.25	unnamed protein product [Vitrella brassicaformis C...	[more]
WP_085783630.1	4.100e-139	57.41	tRNA guanosine(34) transglycosylase Tgt [Candidatu...	[more]
WP_062140990.1	9.100e-139	57.45	tRNA guanosine(34) transglycosylase Tgt [Caedimona...	[more]
OJX03242.1	2.000e-138	57.55	tRNA guanosine(34) transglycosylase Tgt [Caedibact...	[more]
OJX09529.1	7.700e-138	56.84	tRNA guanosine(34) transglycosylase Tgt [Caedibact...	[more]
OJV13213.1	1.300e-137	57.65	tRNA guanosine(34) transglycosylase Tgt [Alphaprot...	[more]
EKE10432.1	1.500e-136	57.96	hypothetical protein ACD_16C00035G0006 [uncultured...	[more]
CBJ25973.1	4.200e-136	53.78	similar to queuine tRNA ribosyltransferase, putati...	[more]
AIL12988.1	4.200e-136	56.26	queuine tRNA-ribosyltransferase [Candidatus Paraca...	[more]
WP_010298363.1	3.600e-135	56.32	tRNA guanosine(34) transglycosylase Tgt [Candidatu...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR061	ncniR061	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR044	ncniR044	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO27G01390.2	NO27G01390.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO27G01390.1	NO27G01390.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|306604	gene_9940	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
jgi.p\|Nanoce1779_2\|642084	gene_8730	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO27G01390.2	NO27G01390.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO27G01390.1	NO27G01390.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO27G01390 ID=NO27G01390|Name=NO27G01390|organism=Nannochloropsis oceanica|type=gene|length=4527bp
CTCCTCCTCCCCCCTCCCTCCCTCCCCAAGCACAAAGCCCACTCCTTCGT
CCCCGCTGCCCTGTGGCAGACGATCGGGGAGGTTCCGTACCATTCCTGCC
TCCCTCCCTCTCTCAACCGGAAGGGAGCGGACCAGCATGTTCATTTCCAC
CTCCTCCTCGTCCTCAATGCATTCGTCCAACTCCTCCATCCATCCCTCGT
CCTCCTCGTCCTCCTCATCCTCCTCTTCATCCTCGTCTAGCGAAGAGGAG
AAGGAGGAAGCGGCTTCTCGTTGTTGCTGTTCCCATTGCTCTCGCGCGTG
GGACAGCTTCACTTTGCTTGTCCTATTCCTGGATGCCGAGGGGAGAGCCT
CCTTCCCTTCCTCCTCCTCCTCCGACACCTCCTTCTTGTCTTCCATCTGA
ACATCTGGACGGAGGGACGAAGGAGCGGGGAATGACGTTGTCTTCGATCC
TCCTGCTCCTGCAGCCCCTCCTCTTCCACCTCGCGAGCGCAATCCCCGTC
GAGGCACCACAACCAGAGGGGACAAGGGAGATGGAGATAAATAAGGTAAT
CGCCCTGCCCCAGACGCCCTTGCCGCTGTTGCTCCTGCAGGAGAAAGAGT
CTTGGCACTTCTCCTTCTGGAGCTGACTGGGGCCGCCGAAAGCAGTAAGC
GACGTAGCATTGGATGAAGGAGGGGGGGTGAGGGCGAGGCGGGCTACCTG
CCTGTCGATGGGATAGAGGAGGTTTTGCCTTGGCCCGGTTGGTGGTGGGG
CTGCCGCAGTCTATGCTGTTGGTGTGTGTAGGAATGGCGTGATTTAGTAA
GGACAACAGTAGTGGTGTGTGAAGCTTTTACACCAAGAGAGGGAGAGCAG
GCGTAGGCAGGAAGGCACGCAAGGACTGGGGTTATCCGCAACCCGTCATC
TCCGAGTCGTCGTCCTGAAGATGGCCCGTTGCCCTTCAACTGCCATTCCT
CTGTCCACTTGACCAAAACACCACCCACACATACACACATACAAGACAGG
CGACTCCCCAGCAGGGGCAGCAGTATGGAGATGGAGGGAGAGCGGCAAAG
GCAGCGCTTGCCACTATCACAATTCGAAGCAACTTGTCTTCCTCCTGTCC
AAAGACCTCCTTCCCCTGGACTGCTATCCGTCCTCCATCTCCCACGCCCC
CCTCTGCGCCTCCTACCCCTGCTCCTGCTCCTCCTTCTTCCTGCCTCCAT
TCACAGTGTCCACCATCATCATCGTCCTAGCCCTCCTCCTTCCTTCTTCT
CTCGATCTGCCTTCCTCTTCCCCTCCTCTTTCCCTCCCCACCAGCGCGCT
TCCTGCTCCTGCCGCCGTCTCCTCTCTTCCACCTCCTCATCATCCACCCC
TCCTCCTTCTACATCATCTCTTCCGCTCAGTAAACGAGACCGCAAACGCC
TACCAAAGGGCCCTCCTCCTCCTCCTCCTCCTCACGCATCAATGACTTAT
TTAGAGGAACGACTGAAAGAGCTGCCGACGCCCACCTATCCCAACTTTGC
CTTTAAAACTACGGCAACAGgtgagaaaaaaagaggaagatgaagggaag
gaagaaatggcgagaaataacggtcccaaagagtttctgggcgtccttcg
ctccctcctttttgacttttttccttccctccctccgtcccttcttccct
ccctccctccctctctccttctcagACCCGTCCGGCAAGACAGCCGCGCG
CTGTGGCCTCCTCAGCACGCCCCATGGGGACATGGAGACACCGGCTTTCA
TATTTTGTGGCACGAAGGCGACTGTTAAAGGACTGACGCCCAAGCAACTG
CGGGACGCGGGCACCCAAATCATCCTCTCCAACACGTACCATCTACTCTT
GCAGCCTGGCAGTGAGCTCGTCCAAGgtacgttccctcttcccttcatcc
gtacctccctctttccccgtcatttccaccttctcccccctccatgcgtg
ggtttacaaggttggcaatgccgtcgagaccgtgaccctgtacatccctc
cagacttcttaccacgaccctctccctccctcaatccctccctctctgtc
tcagAACAAGGCGGACTGCAGGAGTTCACTGGCTGGCACGGCCCGATGCT
CACTGATAGTGGGGGGTACCAGATTTTTAGCATGGGCCATGGGTAGGGTG
GGAGGAAGGAGGGAGGGAGAGGGAGGGAAGGAGGGAGGGAACAGTGATCG
AACGAACACTGAGTCACCCTCCCTCGTCCCTCCTTTCCTTTCCCTTCCCT
CTTCTCTCAGATCGGTCTCGAACGAGATCAAAGGGAAACGCCGCGCGGGG
AAAGAAGGCGGGGAAGGGAAACCACATGAGGGCGGGAGGGAGGGCGGGAA
GGATGAAGGGTGGCAGAAAAGCCTGCTGAAAATTGATGAAGAGGCAGCAA
TATTTCGGTCATACGTGGACGGATCGAAGAAGACGCTGTCGCCTGAGAGC
AGTATTGAGACGCAGCGAGGCCTAGgtggggagggagggagggagggagg
gagggagggggaaaaggaaagtggacatcctcgaaaatagcaagagggag
actaatccttccctccctctctccctctcttttccttagGCGCAGACATA
ATTTTGACGCTGGATGAGTGTACTCCCTTCCATGTAGAAAAGAAATACAC
GGAGGAGAGCATGGAGAGGAGCCACAGATGGGAAATGAGGAGTCTGATGG
AATTCATCCGTGGCGACGACGGAAAGCAGgtaatttatagaaatttacaa
atgatattatgtgcatatttttatttatatctattttatattacctatgt
gtgtcttcattattattatgattattatgattattattattatgattatt
atgattattattattattattattatgattattattatgattattattat
gattattattatgatgatgatgattattattattattattattattatta
ttattattattattattattattattattatgattattatttaatgcatg
catttagttatatgttattttttaatatatgcatgcagttatatacttat
actctagtcattggtgcacctattttattcattgatttatgcacaaatgc
gtatatcacttgtatattcatttatagggacatgtatttatccattaatc
tgtttatcgatttattaattcaaaaaatccaaattaattcattgatttaa
ttcattaattaatatatgaattgatatttcttcactccctgcacccagTC
CCTGTACGGCATCATCCAAGGGGGAGTATATCCCGACCTCCGGGCCCTCT
CCACTGCCTTCGTCAACGGCCACGCCTTCTTCGGCGCGGCCATCGGGGGC
AGCCTCGGACAGAACAAGACGCAGATGTACGACATCGTGGCCCTGACGGC
CAAGCAGCTGAGGAAAGACCGGCCCATCCACCTGCTGGGAATAGGGGGAG
TCCGCGACATCTTCCACGGGGTCCGACAAGgtgcgttcttcgcgcctttc
cctcgcctttccgccatctcctccctcctccacccgtcagtcctcgtttt
cgtatctattagttaatgaattcagtatctaaccctcaacatgtcccacg
ccattgcctccacctccgcagGGATCGACAGCTTCGACTGCGTCCACCCT
ACCCGTATCGGCCGGCATGGATGCGCCCTTGTTAGAGCCCACTATTGgta
cgtcctccctccccccgccctcccttcctccatttctccctccctccctc
taagcgcttgatgtttcccattgagccctttctcacttccttccttcctc
ccttcattcctttctttcttcctcccttcttccctccctcaggcacggat
aagaagcccttgcctcctcttccttccctcctggagatcacctcaacttc
aactcctccaaaatacaacgacttactcttttttccttcctctttcctcc
ctcgttcccccttccctccactttccttcctcagGGACGAAGTTGACAGC
TCTTCCTCCTCCTCCTCCTCTCCCCGGGAGCACGTCGATCTGTCCAAGGC
GCGCTTCAAGCACGATCCGCGGCCCATCGACACCTCCTGCGGGTGTGAGA
CCTGCCAGAATTATTCCCGCGCCTACATTCACCACTTGATCAAGgtaggt
agggagggaggaggagagggatggagggaaggaagaggagaatagcaacc
tcacggtttttgattttttaaaataactcatttccccccccttatcgtcc
ttccgcttgcgaatgtatcgacgtctctcgccataatgtgtgcctcatca
acaggctgttagccacgatgagagaatgaccacgactcaccagtcacttc
ctcacttcatcacctccttcccttcccccctctcgccctccacagGCCAA
CGAGCTCCTCGGCGGCTCGCTCGTCTCCCTCCACAACGTATTTTTTATGA
ATAGGCTCATGGCCGCCATTAGAAGAGCCATCCCTGCCGGGACCTTGGAT
GAGGAGGAGAAGAAGTGGGTCAGGTGA

protein sequence of NO27G01390.2

>NO27G01390.2-protein ID=NO27G01390.2-protein|Name=NO27G01390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGRVGGRREGEGGKEGGNSDRTNTESPSLVPPFLSLPSSLRSVSNEIKGK
RRAGKEGGEGKPHEGGREGGKDEGWQKSLLKIDEEAAIFRSYVDGSKKTL
SPESSIETQRGLGADIILTLDECTPFHVEKKYTEESMERSHRWEMRSLME
FIRGDDGKQSLYGIIQGGVYPDLRALSTAFVNGHAFFGAAIGGSLGQNKT
QMYDIVALTAKQLRKDRPIHLLGIGGVRDIFHGVRQGIDSFDCVHPTRIG
RHGCALVRAHYWDEVDSSSSSSSSPREHVDLSKARFKHDPRPIDTSCGCE
TCQNYSRAYIHHLIKANELLGGSLVSLHNVFFMNRLMAAIRRAIPAGTLD
EEEKKWVR*

protein sequence of NO27G01390.1

>NO27G01390.1-protein ID=NO27G01390.1-protein|Name=NO27G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MEMEGERQRQRLPLSQFEATCLPPVQRPPSPGLLSVLHLPRPPLRLLPLL
LLLLLPASIHSVHHHHRPSPPPSFFSRSAFLFPSSFPPHQRASCSCRRLL
SSTSSSSTPPPSTSSLPLSKRDRKRLPKGPPPPPPPHASMTYLEERLKEL
PTPTYPNFAFKTTATDPSGKTAARCGLLSTPHGDMETPAFIFCGTKATVK
GLTPKQLRDAGTQIILSNTYHLLLQPGSELVQEQGGLQEFTGWHGPMLTD
SGGYQIFSMGHGSVSNEIKGKRRAGKEGGEGKPHEGGREGGKDEGWQKSL
LKIDEEAAIFRSYVDGSKKTLSPESSIETQRGLGADIILTLDECTPFHVE
KKYTEESMERSHRWEMRSLMEFIRGDDGKQSLYGIIQGGVYPDLRALSTA
FVNGHAFFGAAIGGSLGQNKTQMYDIVALTAKQLRKDRPIHLLGIGGVRD
IFHGVRQGIDSFDCVHPTRIGRHGCALVRAHYWDEVDSSSSSSSSPREHV
DLSKARFKHDPRPIDTSCGCETCQNYSRAYIHHLIKANELLGGSLVSLHN
VFFMNRLMAAIRRAIPAGTLDEEEKKWVR*

Synonyms

Publications