NO27G01380, NO27G01380 (gene) Nannochloropsis oceanica

Overview
NameNO27G01380
Unique NameNO27G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length992
Alignment locationchr27:451052..452043 +

Link to JBrowse

Properties
Property NameValue
DescriptionPreprotein translocase Sec, Sec61-beta subunit protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:451052..452043 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005784Sec61 translocon complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Vocabulary: INTERPRO
TermDefinition
IPR030671Sec61-beta/Sbh
IPR016482SecG/Sec61-beta/Sbh
Homology
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_009837087.1 (hypothetical protein H257_11763 [Aphanomyces astaci] >ETV73661.1 hypothetical protein H257_11763 [Aphanomyces astaci])

HSP 1 Score: 76.6 bits (187), Expect = 4.500e-11
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:   10 LSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            ++  AP++G     +  A G R ++  T    S RG G SSAG+LRFYTD+APGL+VGP  VLV +L F+G VVLLH+W KF
Sbjct:    1 MAAAAPSQGTSAPPSGSAAGLRNRKPATKSVNSGRGMGGSSAGVLRFYTDDAPGLKVGPTTVLVGALLFVGFVVLLHVWGKF 82
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: CBN75039.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.5 bits (184), Expect = 9.900e-11
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   27 ARGARAQRATTGG-AQSSRGGASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            A+ AR QR   G    +++GG +  GI+RFYTD+APGLR+GP VVLV SLAFIG VVLLHIW KF
Sbjct:    2 AKRARPQRPAAGARGAAAKGGNNQQGIMRFYTDDAPGLRIGPTVVLVFSLAFIGCVVLLHIWGKF 66
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_002903104.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55528.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 75.5 bits (184), Expect = 9.900e-11
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 0 
Query:    4 GATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            GA TG   +PAP     G   +  R  R   A   G  + RG G SSAGILRFYTD++PGL++GP  VLVS L F+G VVLLH+W KF
Sbjct:   71 GALTG--KKPAPTASGEGAAASGLRNRRPVAAARSGQNTGRGMGGSSAGILRFYTDDSPGLKIGPTTVLVSCLMFVGFVVLLHVWGKF 156
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_008876448.1 (hypothetical protein H310_11520 [Aphanomyces invadans] >ETV94857.1 hypothetical protein H310_11520 [Aphanomyces invadans])

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-10
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 0 
Query:   10 LSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            ++  AP++G     +  A G R ++       + RG G SSAG+LRFYTD+APGLRVGP  VLV +L F+G VVLLH+W KF
Sbjct:    1 MAAAAPSQGTSAPPSGSAAGLRNRKPAAKSVNNGRGMGGSSAGVLRFYTDDAPGLRVGPTTVLVGALLFVGFVVLLHVWGKF 82
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_024573789.1 (protein transport protein sec61 subunit beta-like [Plasmopara halstedii] >CEG37420.1 protein transport protein sec61 subunit beta-like [Plasmopara halstedii])

HSP 1 Score: 74.7 bits (182), Expect = 1.700e-10
Identity = 45/88 (51.14%), Postives = 55/88 (62.50%), Query Frame = 0 
Query:    4 GATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            GA TG   +PAP     G   +  R  R   +   G  + RG G SSAGILRFYTD++PGL++GP  VLVS L F+G VVLLH+W KF
Sbjct:    7 GALTG--KKPAPTASAEGAAASGLRNRRPVASARSGQNTGRGMGGSSAGILRFYTDDSPGLKIGPTAVLVSCLMFVGFVVLLHVWGKF 92
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_008911235.1 (hypothetical protein PPTG_15693 [Phytophthora parasitica INRA-310] >ETI38046.1 hypothetical protein F443_16141 [Phytophthora parasitica P1569] >ETK78260.1 hypothetical protein L915_15687 [Phytophthora parasitica] >ETL31695.1 hypothetical protein L916_15582 [Phytophthora parasitica] >ETL84925.1 hypothetical protein L917_15405 [Phytophthora parasitica] >ETM38070.1 hypothetical protein L914_15539 [Phytophthora parasitica] >ETN03462.1 hypothetical protein PPTG_15693 [Phytophthora parasitica INRA-310] >ETO66815.1 hypothetical protein F444_16126 [Phytophthora parasitica P1976] >ETP07935.1 hypothetical protein F441_15969 [Phytophthora parasitica CJ01A1] >ETP35966.1 hypothetical protein F442_15994 [Phytophthora parasitica P10297])

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-10
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:    4 GATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            GA  G   +PAP     G   +  R  R   A   G  + RG G SSAGILRFYTD++PGL++GP  VLVS L F+G VVLLH+W KF
Sbjct:    7 GALAG--KKPAPTASGEGAAASGLRNRRPVAAARSGQNTGRGMGGSSAGILRFYTDDSPGLKIGPTTVLVSCLMFVGFVVLLHVWGKF 92
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: KUF76771.1 (transport protein Sec61 subunit beta protein [Phytophthora nicotianae])

HSP 1 Score: 73.6 bits (179), Expect = 3.800e-10
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:    4 GATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            GA  G   +PAP     G   +  R  R   A   G  + RG G SSAGILRFYTD++PGL++GP  VLVS L F+G VVLLH+W KF
Sbjct:  284 GALAG--KKPAPTASGEGAAASGLRNRRPVAAARSGQNTGRGMGGSSAGILRFYTDDSPGLKIGPTTVLVSCLMFVGFVVLLHVWGKF 369
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_009530877.1 (hypothetical protein PHYSODRAFT_335225 [Phytophthora sojae] >EGZ13448.1 hypothetical protein PHYSODRAFT_335225 [Phytophthora sojae])

HSP 1 Score: 72.8 bits (177), Expect = 6.400e-10
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 0 
Query:    4 GATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKF 91
            GA  G   +PAP     G   +  R  R   A   G  + RG G S+AGILRFYTD++PGL++GP  VLVS L F+G VVLLH+W KF
Sbjct:   23 GALAG--KKPAPTASAEGAAASGLRNRRPVAAARSGQNTGRGMGGSTAGILRFYTDDSPGLKIGPTTVLVSCLMFVGFVVLLHVWGKF 108
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_012208859.1 (hypothetical protein SPRG_14341 [Saprolegnia parasitica CBS 223.65] >KDO20402.1 hypothetical protein SPRG_14341 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.5 bits (171), Expect = 3.200e-9
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0 
Query:   46 GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKFTS 93
            G SSAGILRFYTD+APG+++GP  VLV  L F+G VVLLH+W KF S
Sbjct:  525 GGSSAGILRFYTDDAPGIKMGPTTVLVLCLMFVGFVVLLHVWGKFRS 571
[Close]
BLAST of NO27G01380 vs. NCBI_GenBank
Match: XP_008618165.1 (protein transporter SEC61 subunit beta [Saprolegnia diclina VS20] >XP_012211937.1 hypothetical protein SPRG_21882 [Saprolegnia parasitica CBS 223.65] >EQC28517.1 protein transporter SEC61 subunit beta [Saprolegnia diclina VS20] >KDO17355.1 hypothetical protein SPRG_21882 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 70.1 bits (170), Expect = 4.200e-9
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0 
Query:   35 ATTGGAQSSRG-GASSAGILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKFTS 93
            A    A + RG G SSAGILRFYTD+APG+++GP  VLV  L F+G VVLLH+W KF S
Sbjct:   25 AAKSSANTGRGMGGSSAGILRFYTDDAPGIKMGPTTVLVLCLMFVGFVVLLHVWGKFRS 83
The following BLAST results are available for this feature:
BLAST of NO27G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009837087.14.500e-1151.22hypothetical protein H257_11763 [Aphanomyces astac... [more]
CBN75039.19.900e-1163.08conserved unknown protein [Ectocarpus siliculosus][more]
XP_002903104.19.900e-1152.27conserved hypothetical protein [Phytophthora infes... [more]
XP_008876448.11.700e-1050.00hypothetical protein H310_11520 [Aphanomyces invad... [more]
XP_024573789.11.700e-1051.14protein transport protein sec61 subunit beta-like ... [more]
XP_008911235.13.800e-1051.14hypothetical protein PPTG_15693 [Phytophthora para... [more]
KUF76771.13.800e-1051.14transport protein Sec61 subunit beta protein [Phyt... [more]
XP_009530877.16.400e-1050.00hypothetical protein PHYSODRAFT_335225 [Phytophtho... [more]
XP_012208859.13.200e-968.09hypothetical protein SPRG_14341 [Saprolegnia paras... [more]
XP_008618165.14.200e-961.02protein transporter SEC61 subunit beta [Saprolegni... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR061ncniR061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01380.1NO27G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642845gene_9942Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|642083gene_8729Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01380.1NO27G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01380 ID=NO27G01380|Name=NO27G01380|organism=Nannochloropsis oceanica|type=gene|length=992bp
ATGGGAGGAGGAGCGACGACAGGCCCCTTGTCTCGCCCTGCCCCAGCAAG
GGGACCCGGGGGGCAAGTGACGGCGCGCGCACGgtacggagggagggaga
gggaggaaagggaagggaggggagtgaagaagagggaggggcggggagaa
gagggaggcactaccggggaggggaggggagggaggcaccaccggggagg
agataaggacgagacagaaacacggaggaggttgggaaggaggatgagga
gatgagaggggaagaaacctgcatcagtcgatagagattttcatctttcg
gcttctccccctcattttggggatgatgcattcactcgttcacttattca
tttggttttcggtttgtctatttatccctggatgtgtgacagGGGGGCGC
GCGCGCAGCGAGCAACGACGGGGGGGGCGCAGAGCAGCCGgtgcgtggaa
ggagaatgagaaatggagggaaggaggggggagagcagaggaagggaggg
agggagggacggaagagctggagatattataccttgaagggcgactactt
tcaaggacgttttcttctcatcttctccctccctccctccctccctccct
ccctcctccaccctccctctctccaccaaaccagGGGCGGCGCATCCTCG
GCCGGCATCCTGCGATTCTACACGGACGAGGCGCCAGGGCTCAGAGTgta
cgtaccactccctccctcccccactccttccctccccctctatccctcct
tctttcctgtcttggattccctcttcctactctcttgtgttcccatcatt
ctcccttcctctccctctttcctccttttgtcctcctcattgcaaccacg
catctaatcttctccgcacatcatgctctccctccctccctccccccccg
acagCGGCCCCCAAGTGGTGCTAGTGTCCTCGCTGGCCTTCATCGGCGTC
GTGGTGCTCCTCCACATCTGGGCCAAGTTCACCTCCAAGTAG
back to top

protein sequence of NO27G01380.1

>NO27G01380.1-protein ID=NO27G01380.1-protein|Name=NO27G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MGGGATTGPLSRPAPARGPGGQVTARARGARAQRATTGGAQSSRGGASSA
GILRFYTDEAPGLRVGPQVVLVSSLAFIGVVVLLHIWAKFTSK*
back to top
Synonyms
Publications