NO27G01330, NO27G01330 (gene) Nannochloropsis oceanica

Overview
NameNO27G01330
Unique NameNO27G01330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2662
Alignment locationchr27:428573..431234 +

Link to JBrowse

Properties
Property NameValue
DescriptionSC35-like splicing factor 30
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:428573..431234 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: CBJ30714.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.0 bits (284), Expect = 7.600e-22
Identity = 50/88 (56.82%), Postives = 75/88 (85.23%), Query Frame = 0 
Query:   83 RVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDM 171
            +VSLLVRNL F TRV+D++R+F  +GDV+DVY+P++F T++P+GFAFVEF+D  DA +A+ +LD   L+GR I+V++A+++RKRPD+M
Sbjct:   32 KVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEM 119
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_002948836.1 (hypothetical protein VOLCADRAFT_120666 [Volvox carteri f. nagariensis] >EFJ50216.1 hypothetical protein VOLCADRAFT_120666 [Volvox carteri f. nagariensis])

HSP 1 Score: 112.8 bits (281), Expect = 1.700e-21
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0 
Query:   77 GDRREKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDM 171
            G  R  RVSL+VRNL  D R ED+R  F+KYG++KDVYIP +++T+ P+GF FVEF D RDAE A   LDR  +NGREI+V F+++ RK P DM
Sbjct:   10 GGSRAPRVSLVVRNLPLDIRAEDLRSKFEKYGELKDVYIPRDYYTQRPRGFGFVEFKDTRDAEDAMYSLDRSTINGREISVTFSREGRKTPRDM 103
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_001693621.1 (SR protein factor [Chlamydomonas reinhardtii] >PNW74140.1 hypothetical protein CHLRE_13g586916v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 110.9 bits (276), Expect = 6.400e-21
Identity = 51/91 (56.04%), Postives = 71/91 (78.02%), Query Frame = 0 
Query:   80 REKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDM 171
            R +RVSL+VRNL  D R+ED+R  F+KYG++KDVYIP +++T+ P+GF F+EF + RDAE A   LDR ++NGREI+V F+++ RK P DM
Sbjct:   47 RAERVSLVVRNLPLDIRMEDLRAKFEKYGELKDVYIPRDYYTQRPRGFGFIEFKETRDAEDAMYNLDRSVVNGREISVTFSREGRKTPRDM 137
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_024581224.1 (serine arginine-rich splicing factor 33-like [Plasmopara halstedii] >CEG44855.1 serine arginine-rich splicing factor 33-like [Plasmopara halstedii])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 0 
Query:   84 VSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMR 172
            VSLLVRN++   + ED+R+ F++YG+V+DVYIP NFHTKEP+GFAFVEF  ER+A+ A+R LD   ++GR++ V+FA+++RK  D MR
Sbjct:  240 VSLLVRNISHRLKPEDLRKEFERYGEVRDVYIPKNFHTKEPKGFAFVEFCSEREADDARRNLDGIRIDGRDLRVVFAQERRKSTDQMR 327
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_020241726.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Asparagus officinalis] >ONK59687.1 uncharacterized protein A4U43_C08F9310 [Asparagus officinalis])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0 
Query:   77 GDRREKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMRA 173
            G RR+   SLLVRNL  D R ED+RR F ++G +KDVY+P +++T EP+GF FV++ D  DAE AK ++DR++  GRE+ V+FAK+ RK+P +MRA
Sbjct:   35 GSRRDLSTSLLVRNLHPDCRPEDLRRPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAEEAKYEMDRQIFFGRELTVVFAKESRKKPAEMRA 130
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_020241727.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Asparagus officinalis])

HSP 1 Score: 110.2 bits (274), Expect = 1.100e-20
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0 
Query:   77 GDRREKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMRA 173
            G RR+   SLLVRNL  D R ED+RR F ++G +KDVY+P +++T EP+GF FV++ D  DAE AK ++DR++  GRE+ V+FAK+ RK+P +MRA
Sbjct:   35 GSRRDLSTSLLVRNLHPDCRPEDLRRPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAEEAKYEMDRQIFFGRELTVVFAKESRKKPAEMRA 130
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: NP_001131976.1 (Splicing factor, arginine/serine-rich 2 [Zea mays] >ACF80625.1 unknown [Zea mays] >ACG32198.1 splicing factor, arginine/serine-rich 2 [Zea mays] >AGE46081.1 arginine/serine-rich splicing factor SCL25A transcript I [Zea mays] >AQL06346.1 Serine/arginine-rich SC35-like splicing factor SCL33 [Zea mays])

HSP 1 Score: 109.8 bits (273), Expect = 1.400e-20
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 0 
Query:   80 REKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMRA 173
            R+   SLLVRNL  D R +D+RR F K+G VKD+Y+P +++T+EP+GF F+++FD  DA  AK  +D ++L GREIAV+FA++ RK+P DMRA
Sbjct:   35 RDLPTSLLVRNLRRDCRPDDLRRPFGKFGPVKDIYLPKDYYTREPRGFGFIQYFDPEDASDAKYYMDGKMLLGREIAVVFAEENRKKPSDMRA 127
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: AQL06348.1 (Serine/arginine-rich SC35-like splicing factor SCL33 [Zea mays])

HSP 1 Score: 109.8 bits (273), Expect = 1.400e-20
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 0 
Query:   80 REKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMRA 173
            R+   SLLVRNL  D R +D+RR F K+G VKD+Y+P +++T+EP+GF F+++FD  DA  AK  +D ++L GREIAV+FA++ RK+P DMRA
Sbjct:   35 RDLPTSLLVRNLRRDCRPDDLRRPFGKFGPVKDIYLPKDYYTREPRGFGFIQYFDPEDASDAKYYMDGKMLLGREIAVVFAEENRKKPSDMRA 127
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: XP_002465213.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Sorghum bicolor] >XP_021309604.1 serine/arginine-rich SC35-like splicing factor SCL33 [Sorghum bicolor] >EER92211.1 hypothetical protein SORBI_3001G358000 [Sorghum bicolor] >AGE46133.1 arginine/serine-rich splicing factor SCL25A transcript I [Sorghum bicolor] >AGE46134.1 arginine/serine-rich splicing factor SCL25A transcript II [Sorghum bicolor] >KXG39285.1 hypothetical protein SORBI_3001G358000 [Sorghum bicolor])

HSP 1 Score: 109.4 bits (272), Expect = 1.900e-20
Identity = 50/96 (52.08%), Postives = 71/96 (73.96%), Query Frame = 0 
Query:   77 GDRREKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDMRA 173
            G  R+   SLLVRNL  D R +D+RR F K+G VKD+Y+P +++T+EP+GF F+++FD  DA  AK  +D ++L GREI V+FA++ RK+P DMRA
Sbjct:   30 GRGRDLPTSLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPKDYYTREPKGFGFIQYFDPEDASDAKYHMDGQMLLGREITVVFAEENRKKPSDMRA 125
[Close]
BLAST of NO27G01330 vs. NCBI_GenBank
Match: KXZ45024.1 (hypothetical protein GPECTOR_59g632 [Gonium pectorale])

HSP 1 Score: 109.4 bits (272), Expect = 1.900e-20
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 0 
Query:   80 REKRVSLLVRNLAFDTRVEDIRRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELLNGREIAVIFAKQQRKRPDDM 171
            R  RVSL+VRNL  D R+ED+R  F+KYG++KDVY+P +++T+ P+GF FVEF D RDAE A   LDR  +NGREI+V ++++ RK P DM
Sbjct:   42 RPLRVSLVVRNLPLDIRMEDLRTKFEKYGELKDVYVPRDYYTQRPRGFGFVEFKDPRDAEDAIYNLDRSFMNGREISVTYSREGRKTPRDM 132
The following BLAST results are available for this feature:
BLAST of NO27G01330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ30714.17.600e-2256.82conserved unknown protein [Ectocarpus siliculosus][more]
XP_002948836.11.700e-2157.45hypothetical protein VOLCADRAFT_120666 [Volvox car... [more]
XP_001693621.16.400e-2156.04SR protein factor [Chlamydomonas reinhardtii] >PNW... [more]
XP_024581224.11.100e-2056.82serine arginine-rich splicing factor 33-like [Plas... [more]
XP_020241726.11.100e-2053.13serine/arginine-rich SC35-like splicing factor SCL... [more]
XP_020241727.11.100e-2053.13serine/arginine-rich SC35-like splicing factor SCL... [more]
NP_001131976.11.400e-2053.76Splicing factor, arginine/serine-rich 2 [Zea mays]... [more]
AQL06348.11.400e-2053.76Serine/arginine-rich SC35-like splicing factor SCL... [more]
XP_002465213.11.900e-2052.08serine/arginine-rich SC35-like splicing factor SCL... [more]
KXZ45024.11.900e-2056.04hypothetical protein GPECTOR_59g632 [Gonium pector... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01330.1NO27G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673648gene_8724Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100442g4gene9449Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01330.1NO27G01330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01330 ID=NO27G01330|Name=NO27G01330|organism=Nannochloropsis oceanica|type=gene|length=2662bp
ATGTGTCCGAATTTGAGTGGGAAGAAACGGAAAACTGGATCATCGCATGA
TCTCGTATGCTTGTTGGTTTTTTGGGTGTCACGCTCTCATGCCCTGGCCA
TCCCCCCTCCATGTACACCACCACACAACAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCATGTCTCACCGGGACCGCGACCGTGGGCGTGA
CCGTCGAAGCCGCAGCCGCGACCGCGGTGGAGACCGACGCGAAAAGCGTG
TCTCCTTGCTTGTCCGTAATCTGGCCTTTGACACGCGgtgggtcgagagg
gaatagaaagtagggggttgagaaggacagaacttgtggttgggacggtg
tggttgctccggctaatcgaggagctgtcagtcacccgacctggcttctc
tacacgcctcccattcctccatcctttgctcattccctcctcccttcttc
acagGGTGGAGGATATCCGTCGCCTATTTGACAAGTACGGGGACGTCAAG
GATGTGTATATTCCCATGAACTTCCATACCAAgtaagtagaagggcggga
gagagggagggagggagggaggatgagcgtgatgatctgatttttttttc
tttttgtgattgtacctattgagaagaaggaaggaagcttgcagtataat
gcagtatatagacgaggattactgttgtaaaacaagaaatgaaggagaga
acagatgaagactggcgaagtggcaggacaccccaaaaaagatggtgaag
aagagcagaggacagccttaacttttggaactctctttgtagccctgtca
gggcagagggaaagcagaagaagacgataaggaagacgaagaagatgacg
tagaataagaagacaaagaggaagacgaagaggaagaagaagatcatgat
catgaagacgaagatgaagaagatcatgatcaagaagacgaagaggaaga
agatcatgatcatgatcatgatcatgaagacgaagatgaagaagatcatg
atcaagaagacgaagaggaagagagagcccaagcaaggcaaattaaagag
gagtgtaaaggagtggattaaggtaaagaaagagaggtgcctagagccag
gcggggtaatttgaataggcacggaggtggtgagttgggcgctgactcga
gtggatgagcactggctttgacacggacgaagaggaggaggtgatggtgg
aggagaagaaaaggaagaaaaaggagtaggaagaggagttgaaggaggag
aaggaggaggaggagagggaggaagatgacaaggaccgggcagcagcggg
aaggagaagaagcaggattgtgacggcaaggaggttcacgtagggctact
gccagctcttagttttctcaccctctccttcctccctccttgcccccctc
ttcctctcctcttggccggatgcctcacagAGAGCCACAAGGGTTCGCCT
TCGTCGAATTCTTTGATGAGAGGgtacgtcctcctgccctccctccctcc
cttcttttctccccccattcctccttccaccttttgaccctatccccccc
gcgctcccgccctccctccctccctccctcattactgctcccagGACGCC
GAGTATGCCAAGCGGAAGCTGGATCGAGAGCTGCTGAACGGGCGAGAAAT
CGCTGTCATCTTCGCAAAGgtagggagggagggggggtagggactcggtg
atgttcgcgcttcctctcggtgttgttcttgtcgtggatacttgttgctt
ccccagcatggccgacacagtccccacactcgtcattacgtgattgtgat
tatccacactcgcttatccacaatcatcattcaatgatcattgacagCAA
CAACGCAAACGCCCCGATGACATGCGGGCTCGCTCGGCACGgttcgtccc
ctccctccctctcttcctccctttcccactcactcctttcctttaacgcc
cattctcttttcttccccccctcccgccctcctagCTCCCGCTCCCCTCG
CGGCCGTCGTTCTCGTTCTCGCTCCCGCTCCCGGTCCCCCCGAGGTCGTG
GCCGTGGTGGCCGCCGCAGCGACGAGAGgtagaggctcgcccttccctcc
ctccttccctccctccctggtctgcgacgtgccgagctctccacgacttg
accttgttctttttccggggtccagaaagaggaacatctgtcctaactct
tgcccccccctccatccctccctcccccccttcctcgtcctgcagGAGCC
CGTCCACCTCTCCCTCCCGCTCACCCAAGAAGGCGGGGAAGCGCTCCCGG
TCATCCTCGCACTCCCCTCCTTCCGATAGGAAGGCGGCGGCACCGACAGG
GGCTTCGGAGAAGGAGGGGGAGGGAAGAGTTGGAGGTGGGAAGGCTTCGC
GATCGCCGAGgtaaggagtaaagggaaggagagagggaggaagcggacga
ggttgtgtagagggtaaacctgtcttcttcatgcctttgtcatttcctct
atcccttcacgtgcaagcatttctccacctatcactgtgttgtttccaca
tcaattttttttccgccccttcattcctcctttcgttctcggacccagCG
CCCCATCCGAGCAGGAGACAGCGGGGGCCAAGCAGGAGGGCGGCGACGAC
GCATCTGTGTAG
back to top

protein sequence of NO27G01330.1

>NO27G01330.1-protein ID=NO27G01330.1-protein|Name=NO27G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MCPNLSGKKRKTGSSHDLVCLLVFWVSRSHALAIPPPCTPPHNSSSSSSS
SSSSSSMSHRDRDRGRDRRSRSRDRGGDRREKRVSLLVRNLAFDTRVEDI
RRLFDKYGDVKDVYIPMNFHTKEPQGFAFVEFFDERDAEYAKRKLDRELL
NGREIAVIFAKQQRKRPDDMRARSARSRSPRGRRSRSRSRSRSPRGRGRG
GRRSDERSPSTSPSRSPKKAGKRSRSSSHSPPSDRKAAAPTGASEKEGEG
RVGGGKASRSPSAPSEQETAGAKQEGGDDASV*
back to top
Synonyms
Publications