NO27G01300, NO27G01300 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G01300 vs. NCBI_GenBank
Match: CBJ25669.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 208.0 bits (528), Expect = 3.000e-50 Identity = 109/219 (49.77%), Postives = 154/219 (70.32%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWR-DSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSDGEFEEL 219 MP+S+R++KVSLTKT+ KGRE K G ++++R+ +D + S+YVFSF ++RS K+VR+++R DSRFFMGKNKVM ALG +DE++DNLR +SKRL GQVGLL T R ++V YF+ V D A G V D+ T+ + L +P SM + FRKLG+ +E+++G LV +A +CT G+PI+PE AKL+ D + F + L+C WS+GEFE L Sbjct: 1 MPRSQRNQKVSLTKTSKKGRELKQGIVSEVRKCVDEYPSVYVFSFVNLRSKLLKEVRLDFREDSRFFMGKNKVMILALGKSEQDEYQDNLRQVSKRLKGQVGLLFTRRPAEEVKTYFKALAVADHAPPGFVHDE--TIPLPTGSLGDWPVSMMEQFRKLGVVVEVEEGVLVNRKAINMCTAGEPISPEGAKLLALYDKKIATFTMSLLCRWSEGEFEAL 217
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_013777471.1 (mRNA turnover protein 4 homolog isoform X1 [Limulus polyphemus]) HSP 1 Score: 207.2 bits (526), Expect = 5.100e-50 Identity = 101/218 (46.33%), Postives = 154/218 (70.64%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWS-DGEFEE 218 MPKS+R+K++SLT T KG E K I ++++ +DS++ ++VFS ++MR++K KDVR EW+ SRFF GKNKVM ALG PEDE RDNL +SK L GQ GLL TN++R++VL++F D+K D+A++G VA + L + PL FP S+ Q R+LG+ ++ G + L++ + +C +G+ +TPEQA+L+ L++ + DF++ + C WS DG FE+ Sbjct: 1 MPKSKRNKQISLTNTRKKGLELKQHLIEEIQKCVDSYAHVFVFSVQNMRNSKLKDVRQEWKHSRFFFGKNKVMTLALGHKPEDEHRDNLHLISKHLRGQCGLLFTNKNREEVLSWFSDYKDSDYARAGNVATDTVVLD--EGPLTQFPHSLEQHLRQLGMPTSLQKGVVTLIKDYQICKEGEILTPEQARLLKLLEIQMADFKISVECMWSNDGSFED 216
BLAST of NO27G01300 vs. NCBI_GenBank
Match: CCA14209.1 (mRNA turnover protein 4 putative [Albugo laibachii Nc14]) HSP 1 Score: 205.3 bits (521), Expect = 1.900e-49 Identity = 103/218 (47.25%), Postives = 150/218 (68.81%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSDGEFEEL 219 MPKS+R + +LTKT+ KG E K +A LREA+D + +++VFSFE+MR+ KDVR+E RDSR F+GKNKVM+ ALG H E+E+ D L L++ LSG VGLL T RS +++L F+ F+V ++ + G A + T+ + PL F SM Q R+LGL +++K+ +++L E +CTKG +TPEQAKL+TH D + +F+L LV WS G+++ L Sbjct: 1 MPKSKRHRVHTLTKTSKKGSELKKNIVASLREAVDEYGAVFVFSFENMRTNHLKDVRMELRDSRMFLGKNKVMKVALGRHKEEEYADELHRLARDLSGNVGLLFTKRSEEEILKAFKTFQVPEYPRGGFCATE--TIVIPKGPLPQFTGSMVQTLRELGLLVDLKNMQVILQEDTTLCTKGNLLTPEQAKLLTHFDRKMAEFRLQLVSVWSGGKYQRL 216
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_016359651.1 (PREDICTED: mRNA turnover protein 4 homolog [Sinocyclocheilus anshuiensis]) HSP 1 Score: 203.4 bits (516), Expect = 7.400e-49 Identity = 104/220 (47.27%), Postives = 147/220 (66.82%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWS--DGEFEEL 219 MPKS+RDKKVSLTKTT KG E K I +LR+ D + ++VFS E+MR+ K KD+R W+ SRFF GKNKVM ALG P DE++DNL +SK L G+VG+L TN+++ +V YF FK D+A++G VA +TL + PL FP SM R+LGL +K G + L++ F VC +G +TPEQA+++ + +V+F++ + C W+ G+FE+L Sbjct: 1 MPKSKRDKKVSLTKTTKKGLEAKQNLIEELRKCADIYRYVFVFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMMIALGKGPTDEYKDNLHKVSKFLRGEVGVLFTNKTKDEVQEYFSSFKEVDYARAGNVATMAMTLD--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLIKDFEVCKEGDTLTPEQARILKLFGIEMVEFKISIKCMWNSESGDFEKL 218
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_005797011.1 (mRNA turnover protein 4 homolog [Xiphophorus maculatus]) HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48 Identity = 103/220 (46.82%), Postives = 148/220 (67.27%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSD--GEFEEL 219 MPKS+RDKK+SLTKT KG E K I +LR+ +D++ +L++FS E+MR+ K KD+R W+ SRFF GKNKVM ALG DE++DNL +SK L G+VG+L TN+++ +V YF FK D+A++G A D+TL+ + PL FP SM R+LGL +K G + LL+A+ VC +G +TPEQA+L+ + + +F++ + C W+ GEFE L Sbjct: 1 MPKSKRDKKISLTKTAKKGLESKQKLIEELRKCVDTYRNLFIFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMIVALGKGQTDEYKDNLHKVSKYLRGEVGVLFTNKTKDEVQEYFNHFKETDYARAGNQAQMDVTLE--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLKAYDVCKEGDVLTPEQARLLKLFAIEMAEFKVQIKCMWNSETGEFESL 218
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_007549599.1 (PREDICTED: mRNA turnover protein 4 homolog [Poecilia formosa] >XP_014899944.1 PREDICTED: mRNA turnover protein 4 homolog [Poecilia latipinna]) HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48 Identity = 103/220 (46.82%), Postives = 148/220 (67.27%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSD--GEFEEL 219 MPKS+RDKK+SLTKT KG E K I +LR+ +D++ +L++FS E+MR+ K KD+R W+ SRFF GKNKVM ALG DE++DNL +SK L G+VG+L TN+++ +V YF FK D+A++G A D+TL+ + PL FP SM R+LGL +K G + LL+A+ VC +G +TPEQA+L+ + + +F++ + C W+ GEFE L Sbjct: 1 MPKSKRDKKISLTKTAKKGLESKQKLIEELRKCVDTYRNLFIFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMIVALGKGQTDEYKDNLHKVSKYLRGEVGVLFTNKTKDEVQEYFNHFKETDYARAGNQAQMDVTLE--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLKAYDVCKEGDVLTPEQARLLKLFAIEMAEFKVQIKCMWNSETGEFESL 218
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_014852520.1 (PREDICTED: mRNA turnover protein 4 homolog [Poecilia mexicana]) HSP 1 Score: 202.6 bits (514), Expect = 1.300e-48 Identity = 103/220 (46.82%), Postives = 148/220 (67.27%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSD--GEFEEL 219 MPKS+RDKK+SLTKT KG E K I +LR+ +D++ +L++FS E+MR+ K KD+R W+ SRFF GKNKVM ALG DE++DNL +SK L G+VG+L TN+++ +V YF FK D+A++G A D+TL+ + PL FP SM R+LGL +K G + LL+A+ VC +G +TPEQA+L+ + + +F++ + C W+ GEFE L Sbjct: 1 MPKSKRDKKISLTKTVKKGLESKQKLIEELRKCVDTYRNLFIFSVENMRNNKLKDIRTAWKHSRFFFGKNKVMIVALGKGQTDEYKDNLHKVSKYLRGEVGVLFTNKTKDEVQEYFNHFKETDYARAGNQAQMDVTLE--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLKAYDVCKEGDVLTPEQARLLKLFAIEMAEFKVQIKCMWNSETGEFESL 218
BLAST of NO27G01300 vs. NCBI_GenBank
Match: CCI40765.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 202.2 bits (513), Expect = 1.600e-48 Identity = 101/216 (46.76%), Postives = 150/216 (69.44%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSDGEFE 217 MPKS+R + +LTKT+ KG E K +A LREA+D + +++VFSFE+MR+ KDVR+E RDSR F+GKNKVM+ ALG + E+E+ D L L++ LSG VGLL +NRS++++L F F++ ++ + G A + T+ + PL FP SM Q R+LGL +++K+ +LVL E +CT+GK ++PEQAKL+ H D + F+L LV WS G+++ Sbjct: 1 MPKSKRHRVHTLTKTSKKGSELKKSIVASLREAVDQYGAVFVFSFENMRTNHLKDVRMELRDSRMFLGKNKVMKVALGRNKEEEYADELHRLARDLSGNVGLLFSNRSKEEILEAFEKFQIPEYPRGGFCAME--TIVIPKGPLPQFPGSMVQTLRELGLLVDLKNMQLVLQEECTICTEGKLLSPEQAKLLAHFDRKMATFRLQLVSVWSGGKYQ 214
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_012691380.1 (PREDICTED: mRNA turnover protein 4 homolog [Clupea harengus]) HSP 1 Score: 202.2 bits (513), Expect = 1.600e-48 Identity = 100/220 (45.45%), Postives = 148/220 (67.27%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSD--GEFEEL 219 MPKS+RDKK+SLTKT KG E K I + R+ +D + ++++FS EHMR+ K KD+R W+ SRFF GKNKVM ALG P DE++DNL +S+ L G+VG+L TN+++++V YF +FK D+A++G VA +TL + PL FP SM R+LGL +K G + L++ FVVC +G +TPEQA+++ + + +F+L + C W+ G+F+ L Sbjct: 1 MPKSKRDKKISLTKTAKKGLESKQNLIEECRKCVDIYKNVFIFSVEHMRNNKLKDIRTAWKHSRFFFGKNKVMMIALGRGPADEYKDNLHKVSRFLKGEVGVLFTNKTKEEVQEYFNNFKEIDYARAGNVAQMAVTLD--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLIKEFVVCKEGDSLTPEQARILKLFAIQMAEFKLTIKCMWNSETGDFKLL 218
BLAST of NO27G01300 vs. NCBI_GenBank
Match: XP_012736844.1 (mRNA turnover protein 4 homolog [Fundulus heteroclitus]) HSP 1 Score: 202.2 bits (513), Expect = 1.600e-48 Identity = 102/220 (46.36%), Postives = 148/220 (67.27%), Query Frame = 0 Query: 1 MPKSRRDKKVSLTKTTSKGREQKAGTIAKLREALDSFSSLYVFSFEHMRSAKFKDVRIEWRDSRFFMGKNKVMQKALGMHPEDEFRDNLRFLSKRLSGQVGLLATNRSRKDVLAYFRDFKVQDFAKSGAVADKDLTLQVADDPLHYFPASMFQLFRKLGLNLEIKDGKLVLLEAFVVCTKGKPITPEQAKLMTHLDLPLVDFQLGLVCCWSD--GEFEEL 219 MPKS+RDKK+SLTKT KG E K I +LR+ +D++ +L++FS E+MR+ K KD+R W+ SRFF GKNKVM ALG DE++DNL +S+ L G+VG+L TN+++ +V YF FK D+A++G A D+TL+ + PL FP SM R+LGL +K G + LL+A+ VC +G +TPEQA+L+ + + +F++ + C W+ GEFE L Sbjct: 1 MPKSKRDKKISLTKTAKKGLESKQKLIEELRKCVDTYRNLFIFSVENMRNNKLKDIRTSWKHSRFFFGKNKVMIVALGKGQTDEYKDNLHKVSRYLCGEVGVLFTNKTKDEVREYFNHFKEMDYARAGNKAQMDVTLE--EGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLKAYDVCKEGDVLTPEQARLLKLFAIEMAEFKVQIKCMWNSETGEFESL 218 The following BLAST results are available for this feature:
BLAST of NO27G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G01300 ID=NO27G01300|Name=NO27G01300|organism=Nannochloropsis oceanica|type=gene|length=1736bpback to top protein sequence of NO27G01300.1 >NO27G01300.1-protein ID=NO27G01300.1-protein|Name=NO27G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=220bpback to top Synonyms
Publications
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