NO27G01190, NO27G01190 (gene) Nannochloropsis oceanica

Overview
NameNO27G01190
Unique NameNO27G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2347
Alignment locationchr27:375843..378189 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:375843..378189 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO27G01190 vs. NCBI_GenBank
Match: EWM20985.1 (hypothetical protein Naga_100487g4 [Nannochloropsis gaditana])

HSP 1 Score: 659.8 bits (1701), Expect = 6.700e-186
Identity = 347/499 (69.54%), Postives = 394/499 (78.96%), Query Frame = 0 
Query:   14 RQASPSSSSCKVFGVLALVAAAAQAFIVPSVPTGRSSDMIQTAPRRSATRLSPLSVVLSPRQREERELEEADVRRVYGSIAQTFADKVADKALSTSPPLLSAAQVETTLRPALDKLARKXXXXXXXXXXXXXXXXXXXXXGHKVWYVTEKGDLEVVPLVLEAEQREMDEMRALIDGRNYTGALSIYQGRYKRFPRNPPPPRQTSLAFEALHAAGLVNQTVVLYNYWYAAKNQGGRVLEPVSLYWVTRSLLEHANRLDMAVDVFRAHTRFDCLPSGPTLLLLLQACLDRNLYELASELLEATHLGGFALPASLGNALVEGLLDQGCLDLADRAVSILLTRRLPLDVRVGTYFKNYMVKNGRMHLAYLHLTDPRLTHSRFRASANGYNMLLWRMCRVFMKTREAALPPSD--PIQTSSPXXXXXXXXAPLTSKNELRGLTLRIARVVAMMNRFGYRVTPQSGAMLQDVAAATGEFGFFQVLEKKLKEIEKEGGVEEPDFGL 511
            R  +P S S  +F +L L+   + AFI P++P   S+  +   P  S+TRLSPLSVVLSPRQREERE+EEADV+RV+GSIAQ+FADKV +KA S +   LS   +E +LRP+L+KL RK                      HKVWYVTE G LE VP VLEAE REM+EMRAL+   N +GAL++Y+ RYKRF RNPPPP QT+LAF+ALHA G VNQ+V LYNYWYAAKNQG +VLEP SLYW+TRSLLEHANRLDMAVDVFRAH RF CLPSGPTLLLLLQA +DR L+EL +ELLEATHLGGF LP SLGN LVEGLLDQG LD+ADR VS+LL RRLPLD+RVGTYFKN++VKNGRMHLAYLHL DPRLTHSRFRASANGYNMLLWRMCR FM+ RE A P S+   + TS+P        A L++KNELRGLTLRIARVVAMMNR+GYRVTPQSGAMLQDVAAATGEFGFFQVLEKKLK IE+EGGVEEP FGL
Sbjct:    7 RTQAPPSCSAFLFPLLPLLLPLSHAFIAPTMPA--SASAVVKRPVTSSTRLSPLSVVLSPRQREEREVEEADVQRVFGSIAQSFADKVVEKAQSAAG--LSPEDIEASLRPSLEKLVRKASAAVTEQELRPILERMAGAIEHKVWYVTETGALEAVPRVLEAEAREMEEMRALMAAGNCSGALAVYRDRYKRFSRNPPPPAQTTLAFQALHAGGQVNQSVALYNYWYAAKNQGDQVLEPASLYWLTRSLLEHANRLDMAVDVFRAHARFHCLPSGPTLLLLLQAAVDRRLFELGAELLEATHLGGFPLPPSLGNVLVEGLLDQGALDMADRVVSVLLARRLPLDLRVGTYFKNFVVKNGRMHLAYLHLADPRLTHSRFRASANGYNMLLWRMCRAFMRLRETAPPASEATALSTSTP------GAAALSTKNELRGLTLRIARVVAMMNRYGYRVTPQSGAMLQDVAAATGEFGFFQVLEKKLKAIEEEGGVEEPTFGL 495
The following BLAST results are available for this feature:
BLAST of NO27G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20985.16.700e-18669.54hypothetical protein Naga_100487g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01190.1NO27G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603678gene_8707Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100487g4gene9440Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01190.1NO27G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01190 ID=NO27G01190|Name=NO27G01190|organism=Nannochloropsis oceanica|type=gene|length=2347bp
TGCTTAGCGCGCCTGTCTGAGTCAAATGCACATCTCGAAGGGGCAAGAGT
TTGGCTTCCATTTTGGACGAGATTAGTCTACACCACAGCGTTTTTCAAAG
TAAACCACCGGCGATGCGCGTGGCTGTGCTATCCTTTTGCGGCTTTGGGG
AGTGCAAAACCCCGCCGCGGCGCACTCTTCCCCCGCCTCCTCTTATTTAT
GGAAGGAAGCTTCTGTGCTTTCTTCGATCAATTTTTCTCATCTTACACCA
AAATCACACCTTCCGGCCTGCCAACACCGCCACCACAGCTGATTTAAGAG
TAAGTGCATTGCAAGGGAGGCGCTCCTGCAAACTCAGCGCACCATGGCAT
CCAGCAGAAGAGATGGCCGCAGCCACGCCCCAAGGCAAGCATCACCCTCG
TCATCCTCCTGCAAAGTCTTCGGCGTGCTCGCTCTGGTTGCCGCCGCTGC
GCAAGCCTTTATCGTGCCTTCCGTCCCCACAGGAAGATCTAGCGATATGA
TTCAGACAGCTCCTAGGCGGTCAGgtacgtccttagagtgagggtctaaa
cacgggcgtcactgagatgggagtgatgccaaactctcctcatagttccg
tgtcataaagtgcctgtgtgtctgtgttcctttatctttgtgtgtctatg
tacctgtccgtgggcatctttttgctgtgcttctgtgcgtttgcgtgtgt
atgtttgtgtacgtatttctatgtgtgtgtgtgagcgtgtgtcagacagt
gtctgtcggtctgtcaaactatgtatgtatgtggccaccgccccgtgggt
tgccagtgggcagtctttgcatgtgtatgctcgtgtgctggcgtctttca
tgtgctcccttcccaactgtaccttatttctcagttccctcctttgccgc
tcttcaaaacggcatgcaccgacacgtgctttctccctctcttcctcccc
tactcccctccaccaatagCCACTCGCCTCTCCCCCCTCTCCGTCGTTCT
ATCTCCTCGGCAACGCGAGGAGCGCGAGTTGGAAGAAGCCGACGTCCGAC
GCGTCTACGGGTCCATTGCTCAAACGTTTGCGGACAAGGTGGCCGACAAG
GCCCTCTCCACCTCTCCACCCCTTCTCTCCGCCGCCCAAGTGGAGACAAC
CCTCCGCCCAGCTCTCGATAAGCTGGCCCGCAAGGCATCCGTGGCTGTGA
CAGAGCAAGAGCTCCGGCCGGTCCTGGAGAAGATGGCGGGCAAAATCGGG
CACAAGGTGTGGTACGTCACGGAGAAGGGCGACCTGGAGGTGGTGCCCCT
CGTCCTGGAGGCCGAGCAGCGGGAGATGGACGAGATGCGCGCGCTAATCG
ACGGCCGGAACTACACGGGGGCCCTGTCGATCTACCAAGGAAGGTACAAG
CGCTTCCCGCGCAACCCACCGCCTCCCCGACAGACCTCCCTGGCCTTCGA
GGCCCTGCATGCCGCGGGGCTGGTCAATCAAACCGTCGTCCTCTACAACT
ATTGGTACGCCGCCAAGAATCAGGGGGGCAGAGTTTTGGAGCCCGTCTCC
CTCTACTGGGTTACTCGCTCTTTGCTCGAACACGCTAATAGGCTGGACAT
GGCCGTGGACGTGTTCAGGGCCCACACCCGCTTCGACTGCCTCCCCTCCG
GCCCCACCCTCCTCCTCCTCCTCCAAGCCTGCCTCGATCGGAACCTCTAT
GAACTCGCATCGGAGCTCCTGGAAGCCACTCATTTGGGGGGGTTCGCCCT
CCCCGCCTCACTAGGCAACGCCCTGGTGGAAGGCCTGCTGGACCAAGGGT
GCCTGGACCTGGCGGACCGGGCCGTCTCAATTCTGCTCACGCGCCGCCTT
CCCTTGGACGTGCGGGTGGGCACGTACTTCAAGAACTACATGGTGAAGAA
CGGGAGGATGCACCTGGCCTATTTGCACTTGACGGATCCCCGGCTTACCC
ACAGTCGTTTCCGCGCGTCGGCCAACGGGTATAACATGCTTCTCTGGCGC
ATGTGCCGCGTGTTCATGAAGACGAGGGAGGCCGCCCTTCCGCCCTCCGA
CCCTATCCAGACTTCCTCGCCTGCGGCATCGTCGTCGTCGTCGTCTGCAC
CCTTGACGTCCAAGAACGAATTGAGGGGCCTGACGCTGCGAATTGCCCGT
GTGGTGGCCATGATGAACAGGTTCGGGTACCGTGTCACACCTCAGAGCGG
AGCCATGCTGCAGGACGTGGCGGCTGCTACGGGTGAGTTCGGGTTCTTCC
AAGTGCTGGAGAAAAAGCTGAAGGAGATAGAGAAAGAGGGAGGGGTGGAA
GAACCTGATTTCGGATTGAAGTAGAGTGGTAACCGAAGATGACGCCC
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protein sequence of NO27G01190.1

>NO27G01190.1-protein ID=NO27G01190.1-protein|Name=NO27G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MASSRRDGRSHAPRQASPSSSSCKVFGVLALVAAAAQAFIVPSVPTGRSS
DMIQTAPRRSATRLSPLSVVLSPRQREERELEEADVRRVYGSIAQTFADK
VADKALSTSPPLLSAAQVETTLRPALDKLARKASVAVTEQELRPVLEKMA
GKIGHKVWYVTEKGDLEVVPLVLEAEQREMDEMRALIDGRNYTGALSIYQ
GRYKRFPRNPPPPRQTSLAFEALHAAGLVNQTVVLYNYWYAAKNQGGRVL
EPVSLYWVTRSLLEHANRLDMAVDVFRAHTRFDCLPSGPTLLLLLQACLD
RNLYELASELLEATHLGGFALPASLGNALVEGLLDQGCLDLADRAVSILL
TRRLPLDVRVGTYFKNYMVKNGRMHLAYLHLTDPRLTHSRFRASANGYNM
LLWRMCRVFMKTREAALPPSDPIQTSSPAASSSSSSAPLTSKNELRGLTL
RIARVVAMMNRFGYRVTPQSGAMLQDVAAATGEFGFFQVLEKKLKEIEKE
GGVEEPDFGLK*
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Synonyms
Publications