NO27G01100, NO27G01100 (gene) Nannochloropsis oceanica

Overview
NameNO27G01100
Unique NameNO27G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3739
Alignment locationchr27:359469..363207 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:359469..363207 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO27G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01100.1NO27G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673629gene_8699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01100.1NO27G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01100 ID=NO27G01100|Name=NO27G01100|organism=Nannochloropsis oceanica|type=gene|length=3739bp
CTGCTATGGCCAAGAGCCGTTACCAATCGTACAACGAGGCACTTCCTTGC
CAGAACAAGCCTGCACTTGCGTAAGCCCTCCTCCAGGGCCACACACGAAC
AAGCTTATCCCTGCGCCGTACTTATGTACTGTTTATCTCACTTATTCCCT
TCTCGCCCCATCTCATCGCAGCAAACGAGAACACCTGCACACGTGCACAC
GGCGGTTCGTTTCAAGCCCGACCATACACCGATGTCCTCCCCACAGCCCG
ACGCCGCAAGCAGCAGTAACAAGCCTTCTTCTTCATCCTCCTCGTCGTCC
TCAACGGCTCTGACAAATCTGGGGGCCTGGTTCCGTGACAGCTTGTCCCT
CACGCCCCCCCCACCCACACCTTCCGCAAGCACGAGCTCCACAAACACGA
AAGCCTTGCTGAGGCAACTGCGTCTGGAAGTCCAAGGCGTCGCTATTGGC
GAAGTTCGCGTGCTCGTAAGGGCCGAGGGACAGATGCTGACGGCGGAGGA
CGGCATTACTTTTGATTGGTACCGAAGTTTCAGTTCGAATGGTGACCTGC
GGCCCATCCCCCGGGGCGTAGTGCAAGGCCGGTGTGCCTCCTACCAACCC
TCGGCGGACGATGTCGGGGCCCGGATCTGCTTGCGTGCTTCTTTGCAACA
AAGTGGAGGGGATGGTGTCAATGAGAGGCCCTTGTCTGTTTTCCATGAGG
TTGGCCCATTCCCTCTGAGTGAGACAACGGCCAAACGCCTGACCGGGTGC
CTGGAGCAGCACAGCAGCAGCAACCGTAGCAACAACAACGACAACAGCAG
TAGAAGTAGACTTAGTAGTAGCAGCAGCAGCAGTATCACATTCTCATGTC
TGATAGAGCCTGACAATCCTCGTGAAGTGTACGACCTCGTTTTGTCATGT
AATGGCGTGGCCCTTTGGTCCCGTCCTTTCTCCTCCTCCTCCTCCTCCTC
TTCCTCCTCCTCCTCCCATCCCACGGCTTCCCCTTCATCTCCACGCACAC
CCATCAAGGCAAAGACTTGGAAACCCCTAGATGACCTCTCCTCATCCCCG
TCCTCTTCAGCCTGGTCCTCCTCATCTTCACCATCCTCTTCCTCCTCTGT
GCCATCCTCATCCTCTTACTCTTCTCCAGACAAAACCAAGAGAAGCCAGG
CCCAAGCTGCTATTGCCACTGCTGTAATAAACGAAGAGAAGGCACAACAT
GGAGAACTGCTCGGGCAAGGCCCATGGAGCACACAAACCAAAATCGCTCT
CCCTCCCTTATCGCCTGGTCTCGTCGTCATCCAGCTCCCCCTCTTTTTTG
AACGGCAACAGCAGGTGCCGATGGAGGAAGGGAAAGAGGGGGGGATTGAG
GGTAGTCCTTCCAGTCCTTGTGATGAGTTGATGTTGGTTCGGCGGTTGTG
TGTGGCTACGGCAGAGGAGAGGAACTTGCTGGTGTTGCTATGGAGGGAGT
GGAGGAAAAGGAGATTGGCGCCTAAGGAGGCGGAGGACTCGAGCCTTTTG
GTCGGGCTTGAGGTGGAGGAGGATGCAGGGAGGGAAGGAAGAGGGGAAGC
TGCAGTTGAACAGCAGGAGTTTGTTTCTAGAGAAAGAGATAGTACCGACG
TGGATAACAGCCCCTGTGAGGTGCCTGTAGATTCTGCAGCATCGTCCTCC
TCCTCGTCCTCCTCCTCGCCCACTGCTTTTTCGCTTGAAGCAGATATGGA
GGGTATTCGTAGCTCCCTTTTCTCCCTCCTTCTGCTCCTCAACCAGGCCT
CCACTGCCACTACCACCACCACCAAGCGCACTCTCTCCCTCCCTCCCCTC
CTCCCCTCCCTCTGTGCGCGGGTCCGGTCCCTCCAGGAGATCTTCAACAG
GCTTCAGCTGCACCTAGAGGCCCTGAAATTAAAATTGATTTCAAACGAAA
TGGCCTCCTCTTTAGCCCGGCAAGAGAACGAAGAAATATGTAATCAAATC
GTATTACTGCAGGCGGAGAGGGAGAAAGAGAAGGCATTTTTGGTGAGATC
GTTGGCGGAGCGAGGTGAGGAAGTAGAAGCAGGGGAAAGACTGCTCTTGG
AGAAGGAGAAGGAGTTAAGGGATGCTAAGGAGCACATTCTTGCGCTTTTA
AGAGAGAGAAAGGAGTTAGAGAGGAGGAAGGAGGGGAGGATGGAGGACGA
GAGGGAGGACCTGAAAGCCGCGCATGCTCCATTGAGGGAACCAAAGGGCG
ACGGTGCTACTGCAGCTGCTACTACTCCTGCTGCTCAGTTCACAACCGTC
ACTGCTGTTGCGGTCAAGCAAGAGGAGGGGGAGGAGATGACAGGGACACC
TACTTCTCCGTCACATTTAAGCACCCCTCCACGCAACTTTCCCAGCACCG
CCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAGCCATATACTTGACCAGTTGCCGCGCCCGT
CCATCTCGTCCCTCAACCCCTTCTCGCCTGACAGTCCCAGCACGATCACT
CTCGTCACGCGCGCCGAAACGGCCGAGGCGCAACTCCAGGCCCTCCAAAA
GCGGCTCCTCACCCACGAGACAGCATTAGCGCGACTGCAAACAGAGGTCA
AGGCCTCGAGGGAGGAGCTCGAGGTAGAGAAAGAGCACACGGCGGTCCTC
CTGAGCGAGAGGAACAGTTTGCGACAGAAATCCGATTCGCTAGTGCGAGA
AATCTCACGAGTCACCCCCCGCCTGGCCTCCCTCTCGCTTTCCCTCTCTC
TCTCCAAATCCTATGTGGACGAGGAGGGGAGGAAGGGTGAGGTGCTGCTG
CCGCCGTGGCCTTCGCAGCACCCAAGGCAGCATCCAGGGCATGTTCTGGA
GTCATTAAGTGAGATGGAGAGCTTTATGAGGGAGCACCGACAACTGCAGC
AGCAGGTAGAGGTGTACAAAAGAGATAATAAGAGGCTGCTAGCTGAGCGA
GGAGATGGAGGAGAAGGAGGAGGAAGGCAAGGAGGACGGACGTCAGTGCC
TCTTCATCCCTCAATGCTCCGACGGACACATTCAGCGTCGCTGGACCGCT
CTTCCTCCTTTTCTTCCTCCTTTTCCTCCTCCTCTTTCTCTTTATCTTCC
TCGGTATTGGGAGTGAGTGTGGGAGGAATGATGGGTCGGAAGCTTAGTAC
CAACGGGCGGGCCCTCTTCACTCAGAAGAGAGAGGGAGGGGGGAAGGGGG
GGCATGTAGGAATCAGCGGGCAGGCTTCCTTGGGGTTAGAGCGTCGACAC
GGCCTGGATGGGGTGGATGCTCCTCTTGCTGCTGCGGATGGGAGCAACAG
CAGCAGTAAGACGGCGGTACATAAGACGGTACCGGAATTGCACCGGCTGC
TGCAAGGGCTGACTGAGAGTCTTCGGGAGAAGCAGGAGCAGTTGGACGTA
CAGACGGATTTCTCCAAGAGGCTGGCCGGGAAATTGAACAGGCTGGAGGA
CATGGTGCGGAGGGAGGGAGGGATAGAGCTACCAATGGATTGGGACCTTG
AGGACGAGGGGAGGGAAGAGGTGCGGAAGGTTTGGATGGACGTGTGAGGA
GGGAGGAAATGGGGGAGGGATGGCTTTGTGTAATTAGATAGACCTGTAAG
TCGTGTCGAGAACTGGAGATATGCATTGTTTTGGACTAGAGTCCTGTTGC
AATTGCATTGTAAGCATGAAGGGAAGTTCGTCGGCGCTC
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protein sequence of NO27G01100.1

>NO27G01100.1-protein ID=NO27G01100.1-protein|Name=NO27G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1158bp
MYCLSHLFPSRPISSQQTRTPAHVHTAVRFKPDHTPMSSPQPDAASSSNK
PSSSSSSSSSTALTNLGAWFRDSLSLTPPPPTPSASTSSTNTKALLRQLR
LEVQGVAIGEVRVLVRAEGQMLTAEDGITFDWYRSFSSNGDLRPIPRGVV
QGRCASYQPSADDVGARICLRASLQQSGGDGVNERPLSVFHEVGPFPLSE
TTAKRLTGCLEQHSSSNRSNNNDNSSRSRLSSSSSSSITFSCLIEPDNPR
EVYDLVLSCNGVALWSRPFSSSSSSSSSSSSHPTASPSSPRTPIKAKTWK
PLDDLSSSPSSSAWSSSSSPSSSSSVPSSSSYSSPDKTKRSQAQAAIATA
VINEEKAQHGELLGQGPWSTQTKIALPPLSPGLVVIQLPLFFERQQQVPM
EEGKEGGIEGSPSSPCDELMLVRRLCVATAEERNLLVLLWREWRKRRLAP
KEAEDSSLLVGLEVEEDAGREGRGEAAVEQQEFVSRERDSTDVDNSPCEV
PVDSAASSSSSSSSSPTAFSLEADMEGIRSSLFSLLLLLNQASTATTTTT
KRTLSLPPLLPSLCARVRSLQEIFNRLQLHLEALKLKLISNEMASSLARQ
ENEEICNQIVLLQAEREKEKAFLVRSLAERGEEVEAGERLLLEKEKELRD
AKEHILALLRERKELERRKEGRMEDEREDLKAAHAPLREPKGDGATAAAT
TPAAQFTTVTAVAVKQEEGEEMTGTPTSPSHLSTPPRNFPSTANSSSSSS
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSHILDQLPRPSISSLNPF
SPDSPSTITLVTRAETAEAQLQALQKRLLTHETALARLQTEVKASREELE
VEKEHTAVLLSERNSLRQKSDSLVREISRVTPRLASLSLSLSLSKSYVDE
EGRKGEVLLPPWPSQHPRQHPGHVLESLSEMESFMREHRQLQQQVEVYKR
DNKRLLAERGDGGEGGGRQGGRTSVPLHPSMLRRTHSASLDRSSSFSSSF
SSSSFSLSSSVLGVSVGGMMGRKLSTNGRALFTQKREGGGKGGHVGISGQ
ASLGLERRHGLDGVDAPLAAADGSNSSSKTAVHKTVPELHRLLQGLTESL
REKQEQLDVQTDFSKRLAGKLNRLEDMVRREGGIELPMDWDLEDEGREEV
RKVWMDV*
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Synonyms
Publications