NO27G01030, NO27G01030 (gene) Nannochloropsis oceanica

Overview
NameNO27G01030
Unique NameNO27G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr27:335949..337316 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:335949..337316 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO27G01030 vs. NCBI_GenBank
Match: EWM21003.1 (hypothetical protein Naga_100081g21 [Nannochloropsis gaditana])

HSP 1 Score: 697.6 bits (1799), Expect = 2.600e-197
Identity = 320/449 (71.27%), Postives = 379/449 (84.41%), Query Frame = 0
Query:    7 VLLLLPAASQAVHHFKELNSIQDLELLGLINKDRGMAQKHLLLGFSNAECVDKVRNVGFPYDYAALGEHVETGEVMLERDDELARAYNITECNQYVYVPRGGDVRTDFDVLSAHDKLQLHNWLFTHLAIEIEIVNDLPFDVSIKWEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVRVDGSETTLRLSDYLSNDASRQCANPLDCSAGATGALPKNVNNEHGSSDDIQTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLHRYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFKVV 456
            V+LLLP A QAV+HFK+LN ++DLELLGL+ KD G+A+KHLLLGFS++ C   VR +GFP +Y+ LGEHVETGEVML+R+ EL   YNI+ CN+YVYVPRGG  R D+DV+ A DKLQLHNWLFTHLA+ +E++NDLPFDVSIKWEDTGR + P DLI+IPRG+++S++TFE+HHLRFVSHQPG+    FLRVRVDGS  TLRLSD+L+ +A++QC NP DC A     LP NVNN+HGS+DD+Q   EDM IWR RD EN+ RV+RNE QP+TKPRYT LGFK+ RIPD +Y+++L+RY++GE I EPWPKSDCHTNFFEAPSTMVYL+DAEK  IF+ M P LS+WAGGV L PTS YG+RIYHNGSWLREHVDTGDTHIISAIMN+ QDVEEDWLLTFIDHN +RHF+TLEPGDALYYESAS LHGRP+  KG  FANAFVHFKVV
Sbjct:   11 VMLLLPLALQAVNHFKDLNRLEDLELLGLVQKDTGVAEKHLLLGFSSSACEQSVRGLGFPSEYSVLGEHVETGEVMLDRNTELPGVYNISSCNEYVYVPRGGRTREDYDVIKAVDKLQLHNWLFTHLALTMEVINDLPFDVSIKWEDTGRSQAPQDLISIPRGRTSSINTFETHHLRFVSHQPGSEPRQFLRVRVDGSTNTLRLSDFLTEEANQQCLNPQDCGAKTVTTLP-NVNNQHGSTDDVQLVEEDMNIWRGRDVENKGRVVRNEVQPKTKPRYTALGFKKTRIPDAVYQVLLNRYHSGEHILEPWPKSDCHTNFFEAPSTMVYLSDAEKADIFSGMMPNLSKWAGGVKLHPTSCYGIRIYHNGSWLREHVDTGDTHIISAIMNVDQDVEEDWLLTFIDHNDNRHFVTLEPGDALYYESASGLHGRPIPLKGKLFANAFVHFKVV 458          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: EWM30492.1 (hypothetical protein Naga_100013g87 [Nannochloropsis gaditana])

HSP 1 Score: 251.1 bits (640), Expect = 6.400e-63
Identity = 153/453 (33.77%), Postives = 231/453 (50.99%), Query Frame = 0
Query:    6 TVLLLLPAASQAVHHFKELNSIQDLELLGLINKDRGMAQKHLLLGFSNAECVDKVRNVGFPYDYAAL-GEHVETGEVMLER-DDELARAYNITECNQYVYVPRGGDVRTDFDVLSAHDKLQLHN--WLFTHLAIEIEIVNDLPFDVSIKWEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVRVDGSETTLRLSDYLSNDASRQCANPLDCSAGATGALPKNVNNEHGSSDDIQTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLH--RYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHF 453
            +V+ L P  + AV++F  L+S   ++ LG I    G+ QK+ L  FSN+ECV  + ++GFP+ +  L G   E   +++E   +EL   +N+++C  +     G  +    + +   D+  L +  W    L   + I NDL   V + WE    R+G      + R  S     F S            G     R   D  +    L+  +  D ++    PL  S    G          G ++ +Q      ++WR R + N AR+ +NE QP T  +YT  GFK+  +P  ++  +L     +  +R+ EPW K D H NF+E  +T+VY     ++ +F  +KP+L  W GG  L PTS YG+R Y+NGS LR+HVD G THI+SAI+N+ QDV+E W L+ +DH G RHFI + PG+   YESA+ LHGR  A +G +F N F HF
Sbjct:   38 SVVALGPYPAAAVNYFTGLDSFVAMKALG-ITDGAGVLQKNTLFSFSNSECVHDLHDIGFPFIFMDLPGATHELANILVETPPNELMSFFNVSDCKSFYSFTAGDSIHDKGNKIVPSDQASLEDAFWHDQRLP-NLRIRNDLQRVVDVFWE---LRDGSLTEFRVVRLNSGQEERFRSF----------LGDIFIFR---DAYDDMRLLARTVITDGNK----PLILSQTLMG---------KGDTETLQLNENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMPSYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIVFKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAILNVRQDVDEVWPLSILDHQGRRHFINMAPGEMCLYESATALHGRTQALRGRYFDNLFAHF 459          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: XP_005855109.1 (prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526] >EKU21252.1 prolyl 4-hydroxylase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62
Identity = 153/453 (33.77%), Postives = 230/453 (50.77%), Query Frame = 0
Query:    6 TVLLLLPAASQAVHHFKELNSIQDLELLGLINKDRGMAQKHLLLGFSNAECVDKVRNVGFPYDYAAL-GEHVETGEVMLER-DDELARAYNITECNQYVYVPRGGDVRTDFDVLSAHDKLQLHN--WLFTHLAIEIEIVNDLPFDVSIKWEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVRVDGSETTLRLSDYLSNDASRQCANPLDCSAGATGALPKNVNNEHGSSDDIQTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLH--RYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHF 453
            +V+ L P  + AV++F  L+S   ++ LG I    G+ QK+ L  FSN ECV  + ++GFP+ +  L G   E   +++E   +EL   +N+++C  +     G  +    + +   D+  L +  W    L   + I NDL   V + WE    R+G      + R  S     F S            G     R   D  +    L+  +  D ++    PL  S    G          G ++ +Q      ++WR R + N AR+ +NE QP T  +YT  GFK+  +P  ++  +L     +  +R+ EPW K D H NF+E  +T+VY     ++ +F  +KP+L  W GG  L PTS YG+R Y+NGS LR+HVD G THI+SAI+N+ QDV+E W L+ +DH G RHFI + PG+   YESA+ LHGR  A +G +F N F HF
Sbjct:   28 SVVALGPYPAAAVNYFTGLDSFVAMKALG-ITDGAGVLQKNTLFSFSNNECVHDLHDIGFPFIFMDLPGATHELANILVETPPNELMSFFNVSDCKSFYSFTAGDSIHDKGNKIVPSDQASLEDAFWHDQRLP-NLRIRNDLQRVVDVFWE---LRDGSLTEFRVVRLNSGQEERFRSF----------LGDIFIFR---DAYDDMRLLARTVITDGNK----PLILSQTLMG---------KGDTETLQLNENQADVWRGRQNTNVARLRQNELQPSTVKKYTGGGFKKMLMPSYLHTRLLEYLARHEDQRMDEPWHKDDLHVNFYEKMTTIVYTDRDMRDIVFKTLKPILESWVGGEKLMPTSTYGIRRYYNGSILRDHVDIGRTHIVSAILNVRQDVDEVWPLSILDHQGRRHFIDMAPGEMCLYESATALHGRTQALRGRYFDNLFAHF 449          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: CBN77694.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 173.3 bits (438), Expect = 1.700e-39
Identity = 88/209 (42.11%), Postives = 126/209 (60.29%), Query Frame = 0
Query:  245 GSSDDIQTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLHRYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFK 454
            G+S+  +T  +D+     R   ++ R++ N  QP+  PR+T +GFK+  +PDD++ ++   Y   +R S     S   T    A  +        K QIF  ++P+L EW+ GV L  T+ YGVR+Y N SWL  HVDT  TH +S IM + QDVEEDW L   DH G+ + IT++P D + YESA+C+HGRP  F G+++ANAFVHFK
Sbjct:  245 GTSEGAETP-QDIASRNARRQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLVKTYYEENKRRSGLRTTSSPTTWRRRATWSTCRENGKLKEQIFGGLRPILEEWS-GVELVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHFK 451          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: XP_002293404.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89140.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 156.8 bits (395), Expect = 1.600e-34
Identity = 85/207 (41.06%), Postives = 121/207 (58.45%), Query Frame = 0
Query:  260 WRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMML-----HRYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAE--------KNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFK 454
            W   D+E R RV  N  QP     YT LGF + R P  + K++      +  +  E   E WPK + +TN +E+P+ M+ + DA         + +++ A K VL +W  GV L P+S+YGVR+Y  G+ L  HVD     +ISAI+N+AQDV+E+W L    H+G+ + IT+EPGD + YES S LHGRP   KG  +AN F+HF+
Sbjct:  126 WLCTDTE-RDRVEMNLRQPSGMYNYTTLGFHKQRAPAKVIKLLTTFWEQNSQSISEIPDEVWPKGNTYTNHWESPTKMLNIGDASLVGGGGSIRTEVWDATKEVLEQWT-GVELSPSSLYGVRVYQEGAVLAPHVDRNPL-VISAIVNVAQDVDEEWPLEVYGHDGNAYNITMEPGDIILYESHSILHGRPFPLKGRHYANVFIHFE 329          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: ETO26451.1 (hypothetical protein RFI_10685 [Reticulomyxa filosa])

HSP 1 Score: 147.9 bits (372), Expect = 7.600e-32
Identity = 123/458 (26.86%), Postives = 203/458 (44.32%), Query Frame = 0
Query:   28 QDLELLGLINKDRGM-AQKHLLLG-FSNAECVDKVRNVGFPYDYAALGEHVETGEVMLERDDELARAYNITECNQYVYVP------RGGDVRTD--------FDVLSAHDKLQLHNWLFTHLAIEIEIVNDLPFDVSIKWEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVRVDGSETTLRLSDYLSNDASRQCANP-LDCSAGATGALPKNVNNEHGSSDDIQTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLHR-----------YNTGERISEPWPKSDCHTNFFEAPSTMVYLTDA-EKNQIFA--AMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQ-DVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFK 454
            Q L+ L   N D  +   +HL+L  +  +   D++        +  + +H++    +  R    ++  +  EC   V+VP       G D  T         +D  S         WL+  L ++I+I  D PF + +      +     D      GK+  ++  +SH L     Q   G + F+ V     ET  ++         R   NP    +   T  L   + +     D         E+ R R +      +RN   P   P + PLGFK+ ++P  +++ ++ R           Y+T  RI+E W       N+F+  S M+ L +  E+    A   ++P+L++W+GG  L  T+ YG+R Y   + LR HVD  +TH+ SAI+ +AQ D++  W L  I  +G R+ I L+PG+ + YES + +HGRP  F G+ F+NAF HFK
Sbjct:   62 QQLKALNFHNDDNDLPGLEHLMLAQYEMSALKDRI--------WHEVEDHMDIAATLGVRKYVESKTPDTCECPLLVFVPIDYANSLGDDYLTTPDTSTIKIWDSSSNGQFSSWKEWLWDLLKVDIKISTDKPFPLQVTVVPNPKNPLVKDGSG-RNGKAYKINPSQSHTL----VQAYTGDQIFVSV---NPETNNQVKS-KKERKQRAAKNPKYTVAPDMTKLLVTELKDGQWGFDVGPRQRLTEELVRRRHATTVMTHVRNLVFPIVLPHHDPLGFKKIKMPKGLHQRLMARTLFACTFYRDYYDT--RIAESWEDEGTQLNYFDVKSHMISLDNRWEERDAIANDVVRPILADWSGGSELEFTAFYGIREYSRNALLRNHVDRTETHVYSAILQVAQTDIDSPWPLEIIGFDGKRYLINLKPGEMVLYESHALIHGRPHPFNGTLFSNAFCHFK 500          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: WP_020560752.1 (hypothetical protein [Thiothrix flexilis])

HSP 1 Score: 147.5 bits (371), Expect = 1.000e-31
Identity = 68/175 (38.86%), Postives = 106/175 (60.57%), Query Frame = 0
Query:  282 PRYTPLGFKRARIPDDIYKMMLHRYNTGERISEPWPKSDCHTNFFEA-----PSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVH 452
            P +TP GFK+ R+PDD+++ +   Y  G + +     +D    + +      P+ M+ L+DA +  IF  + P+L EW   + L P+++YG+R Y  G+ L+ HVD  DTH +S I+N+AQ V++DW L   DH G  H +T++PGD ++YESA   HGRP   +G ++AN F H
Sbjct:  293 PLFTPEGFKKTRLPDDLFQTITEFYQQG-KANMVLEVNDSIGTYIQTTTERHPAKMIELSDALRQTIFTTICPLLEEWT-QLELKPSAIYGIREYQRGATLKMHVDRIDTHQVSMIINVAQQVDQDWFLHIADHKGKIHKVTMQPGDVIFYESARLQHGRPEPLEGEYYANIFAH 465          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: GAX13379.1 (hypothetical protein FisN_8Lh407 [Fistulifera solaris])

HSP 1 Score: 147.1 bits (370), Expect = 1.300e-31
Identity = 80/205 (39.02%), Postives = 122/205 (59.51%), Query Frame = 0
Query:  261 RNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLHRYNTGERISEP--WPKSDCHTNFFEAPSTMVYLTDAE--------KNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFKVV 456
            R RD+E R R+  +  QPQ+   YT +G+K+ + P +++K++   +N     ++P  W   + +TN +++ S+MV + DA+        K +I+ A K +L EW  G  L   S+YG+RIYH  + L  HVD     + SAI+N+AQD++E W L  I HNG    +T+EPGD + YES S LHGRP   KG + AN F+HF+ +
Sbjct:  139 RCRDTE-RDRIEMSLRQPQSMQNYTAIGYKKIKAPPELFKLIEEFWNNNHHKAKPEQWGTGNTYTNNWQSSSSMVSVEDAKLRGGGFTLKQKIWNAAKNILQEWT-GEELTQCSLYGIRIYHADAVLATHVDRLPL-VSSAIINVAQDLDEPWPLEVIGHNGVAENVTMEPGDMVLYESHSVLHGRPFPLKGRYMANIFIHFEPI 340          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: GAX15296.1 (hypothetical protein FisN_8Hh407 [Fistulifera solaris])

HSP 1 Score: 145.6 bits (366), Expect = 3.800e-31
Identity = 80/205 (39.02%), Postives = 122/205 (59.51%), Query Frame = 0
Query:  261 RNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYKMMLHRYNTGERISEP--WPKSDCHTNFFEAPSTMVYLTDAE--------KNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFKVV 456
            R RD+E R R+  +  QPQ+   YT +G+K+ + P +++K++   +N     ++P  W   + +TN +++ S+MV + DA+        K +I+ A K +L EW  G  L   S+YG+RIYH  + L  HVD     + SAI+N+AQD++E W L  I HNG    +T+EPGD + YES S LHGRP   KG + AN F+HF+ +
Sbjct:  138 RCRDTE-RDRIEMSLRQPQSMQNYTEIGYKKIKAPLELFKLIEDFWNNNHHKAKPEQWGTGNTYTNNWQSSSSMVSVEDAKLRGGGFTLKQKIWNAAKNILQEWT-GEELTQCSLYGIRIYHADAVLATHVDRLPL-VSSAIINVAQDLDEPWPLEVIGHNGVAENVTMEPGDMVLYESHSVLHGRPFPLKGRYMANIFIHFEPI 339          
BLAST of NO27G01030 vs. NCBI_GenBank
Match: WP_033082292.1 (hypothetical protein [Colwellia psychrerythraea] >KGJ93493.1 2OG-Fe(II) oxygenase [Colwellia psychrerythraea])

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-30
Identity = 69/174 (39.66%), Postives = 104/174 (59.77%), Query Frame = 0
Query:  282 PRYTPLGFKRARIPDDIYKMMLHRYNTGERIS-EPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPVLSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVEEDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFVHFKV 455
            P YT  GF +AR+P+ +YK +   Y   E ++     +    +   +APS +++LT+  K +I   ++P++  W G   L P+ V+G+R Y NG+ L+EH D G TH+ S I+NIAQ V + W L   DHN  +H + L PGD ++YE A   HGRP+AF G  F N FVH+++
Sbjct:  297 PAYTDEGFLKARLPEALYKKIYDFYQANENMAINEHVEGFITSKEKQAPSELIHLTEDLKKEIHQVLQPLVEAWIGHY-LKPSYVFGIRRYRNGAILKEHRDRGKTHVASVIINIAQLVRQPWPLVIEDHNYRKHHLLLTPGDMVFYEGAKLTHGRPIAFDGDEFCNVFVHYQL 469          
The following BLAST results are available for this feature:
BLAST of NO27G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21003.12.600e-19771.27hypothetical protein Naga_100081g21 [Nannochlorops... [more]
EWM30492.16.400e-6333.77hypothetical protein Naga_100013g87 [Nannochlorops... [more]
XP_005855109.11.900e-6233.77prolyl 4-hydroxylase, partial [Nannochloropsis gad... [more]
CBN77694.11.700e-3942.11conserved unknown protein [Ectocarpus siliculosus][more]
XP_002293404.11.600e-3441.06predicted protein [Thalassiosira pseudonana CCMP13... [more]
ETO26451.17.600e-3226.86hypothetical protein RFI_10685 [Reticulomyxa filos... [more]
WP_020560752.11.000e-3138.86hypothetical protein [Thiothrix flexilis][more]
GAX13379.11.300e-3139.02hypothetical protein FisN_8Lh407 [Fistulifera sola... [more]
GAX15296.13.800e-3139.02hypothetical protein FisN_8Hh407 [Fistulifera sola... [more]
WP_033082292.11.100e-3039.66hypothetical protein [Colwellia psychrerythraea] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G01030.1NO27G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603622gene_8689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G01030.1NO27G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G01030 ID=NO27G01030|Name=NO27G01030|organism=Nannochloropsis oceanica|type=gene|length=1368bp
ATGCGCTTCACCGCGACGGTGCTGCTGCTCCTACCTGCGGCCTCGCAAGC
TGTGCATCATTTTAAGGAGCTCAACAGCATTCAAGACTTGGAGTTGCTGG
GCCTGATCAACAAGGATAGAGGCATGGCCCAGAAGCACCTCCTCCTCGGC
TTCAGCAACGCGGAATGCGTCGACAAAGTGCGCAACGTCGGCTTTCCTTA
CGATTACGCCGCGTTGGGGGAGCACGTGGAGACGGGGGAAGTCATGCTGG
AACGGGACGATGAGCTCGCCCGAGCGTATAACATCACGGAGTGCAACCAA
TACGTTTATGTCCCCCGTGGCGGCGACGTCCGCACCGACTTTGACGTGCT
TAGCGCCCATGACAAGCTGCAATTGCATAATTGGCTTTTTACGCACCTGG
CTATCGAGATTGAGATTGTAAATGACTTGCCTTTTGACGTCTCGATTAAG
TGGGAGGACACCGGCCGCCGTGAAGGCCCACACGATCTTATCGCCATCCC
TCGGGGGAAGTCAGCCTCGGTCCACACCTTTGAATCGCACCACCTTCGCT
TCGTTAGCCACCAGCCTGGGGCGGGGTCGGAGACTTTCTTGCGTGTGCGT
GTTGATGGGTCAGAGACGACGTTGCGGCTTTCGGATTACCTTTCTAATGA
CGCTTCTAGGCAATGTGCCAATCCCCTCGACTGCTCTGCAGGTGCAACGG
GCGCACTGCCCAAGAACGTGAATAACGAACATGGGTCCTCGGATGACATC
CAAACAGCAGTGGAAGATATGGAAATCTGGCGAAATCGAGACAGCGAAAA
CCGAGCCCGAGTCATCCGCAATGAAAACCAACCACAAACCAAACCCCGGT
ACACGCCATTGGGCTTCAAAAGAGCGCGTATTCCCGACGATATCTACAAA
ATGATGCTCCATAGGTACAATACCGGCGAGCGTATCTCGGAGCCATGGCC
TAAATCAGATTGTCACACCAATTTTTTCGAGGCCCCCTCCACGATGGTCT
ACCTGACCGACGCGGAAAAAAACCAAATTTTCGCGGCAATGAAGCCGGTT
CTGAGTGAGTGGGCGGGGGGGGTGAACTTATTTCCGACTTCTGTGTATGG
TGTGAGGATCTACCACAACGGTTCGTGGTTGAGGGAGCATGTGGACACGG
GGGACACGCACATTATTAGTGCCATTATGAACATCGCTCAGGACGTAGAG
GAGGATTGGCTGTTGACCTTTATCGACCACAATGGGGACAGGCATTTCAT
TACCTTGGAACCAGGGGATGCGTTGTACTATGAATCGGCCTCGTGCTTGC
ATGGGAGGCCTGTAGCCTTCAAGGGCTCTTTCTTTGCGAATGCCTTTGTG
CATTTCAAGGTGGTTTAG
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protein sequence of NO27G01030.1

>NO27G01030.1-protein ID=NO27G01030.1-protein|Name=NO27G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MRFTATVLLLLPAASQAVHHFKELNSIQDLELLGLINKDRGMAQKHLLLG
FSNAECVDKVRNVGFPYDYAALGEHVETGEVMLERDDELARAYNITECNQ
YVYVPRGGDVRTDFDVLSAHDKLQLHNWLFTHLAIEIEIVNDLPFDVSIK
WEDTGRREGPHDLIAIPRGKSASVHTFESHHLRFVSHQPGAGSETFLRVR
VDGSETTLRLSDYLSNDASRQCANPLDCSAGATGALPKNVNNEHGSSDDI
QTAVEDMEIWRNRDSENRARVIRNENQPQTKPRYTPLGFKRARIPDDIYK
MMLHRYNTGERISEPWPKSDCHTNFFEAPSTMVYLTDAEKNQIFAAMKPV
LSEWAGGVNLFPTSVYGVRIYHNGSWLREHVDTGDTHIISAIMNIAQDVE
EDWLLTFIDHNGDRHFITLEPGDALYYESASCLHGRPVAFKGSFFANAFV
HFKVV*
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