NO27G01000, NO27G01000 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_005855996.1 (wd40 repeat-containing protein [Nannochloropsis gaditana CCMP526] >EKU20358.1 wd40 repeat-containing protein [Nannochloropsis gaditana CCMP526] >EWM21019.1 wd40 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 402.5 bits (1033), Expect = 2.000e-108 Identity = 219/420 (52.14%), Postives = 268/420 (63.81%), Query Frame = 0
Query: 1 MDDDEGRGERYAPHALSFSIDLDSASWSMLKGHRGEVLSLDILGLERAGTGRDASGMVLLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSA---AAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDYXXXXXXXXXXXXXXXXXXXXXXHTTSVAGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEVAFLASVGNDRMLNFWECSLPRLAGNCSSNSIKSNTNFNSNSSKLRRPRILKQFTDLPGKPNWMVSTV 418
MD+ E R + SF+ LD + WS GH+GEVLSLD+LG + G+ G +LASGGEDSTCR+WDVAAGRAI+CYTGMF+DN+G+ AVAF+D RL AAT TSIYELDL PG+VV+ A+G+LP + +D INQ++V R+G+ VAVADDSG VTLLD+S+RPPKPIRT + D CTCVAFRPRV +DLACGFHST T+GLWD S+GQ+GCRA+ V A +A G + + DDPT APSA SSCQLFNPPY+N L+FSA GR+VAV KGNGEVG+YD+ H+TSVAGV LASVGNDR+LN WEC L +GN + I + R+LK+F+ LPGKPNWMVS V
Sbjct: 1 MDEVEYRNGCTTRNRPSFA--LDDSHWSCFTGHKGEVLSLDLLGPQENGSA--VMGASMLASGGEDSTCRIWDVAAGRAIRCYTGMFDDNQGISAVAFLDKDRLFAATKTSIYELDLRAPGIVVKNAVGSLPDIADDMINQISVQARRGSKKVAVADDSGKVTLLDASLRPPKPIRTFQFPGGE-DFCTCVAFRPRVQWDLACGFHSTSTLGLWDSSRGQRGCRAISVEAGSLSAAGAKDADADDPTTAPSAVSSCQLFNPPYINGLSFSADGRFVAVAKGNGEVGVYDF----------VEGSMVALLEGGHSTSVAGVSFLDVQGADLPGKGASGVRGRSGRSGPF------ILASVGNDRVLNLWECPLLPASGNDVPSGI------------MTPARVLKRFSGLPGKPNWMVSAV 387
BLAST of NO27G01000 vs. NCBI_GenBank
Match: GAY01211.1 (Hypothetical protein PINS_009058 [Pythium insidiosum]) HSP 1 Score: 124.4 bits (311), Expect = 1.000e-24 Identity = 78/233 (33.48%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYT---GMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQ-KGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+L SG +D TCR+WDV + RA+KC + + + GV ++AF D+ L AT + DL G+V+ +++EIN ++V P+K ++A DD+G + + D + + +TLR N LC FRP P+DL G + WDFS+G+ K C +D++A G + + A + A+ QLFNPP V+S+AF++ G+ A G G+ V + D+
Sbjct: 38 VLVSGSDDGTCRLWDVRSTRAVKCLNVKKALAQSDAGVNSMAFGDSDTLYVATGNKVLTFDLRRDGLVLDSLTQPPFQDSDEEINTLSVQPKKA-RYLAAPDDNGDIRVYDLEAK--RLFKTLRGQHTN--LCMTAPFRPNAPWDLVSGGMDGLLL-FWDFSRGRLKFC--IDLNA---GVNALDASSSSSAAAPATENQLFNPPLVHSVAFASNGKTFAAGLGDATVAVVDF 259
BLAST of NO27G01000 vs. NCBI_GenBank
Match: GAY04016.1 (Hypothetical protein PINS_011829 [Pythium insidiosum]) HSP 1 Score: 124.0 bits (310), Expect = 1.400e-24 Identity = 78/233 (33.48%), Postives = 125/233 (53.65%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYT---GMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQ-KGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+L SG +D TCR+WDV + RA+KC + + + GV ++AF D+ L AT + DL G+V+ +++EIN ++V P+K ++A DD+G + + D + + +TLR N LC FRP P+DL G + WDFS+G+ K C +D++A G + + A + A+ QLFNPP V+S+AF++ G+ A G G+ V + D+
Sbjct: 38 VLVSGSDDGTCRLWDVRSTRAVKCLNVKKALAQSDAGVNSMAFGDSYTLYVATGNKVLTFDLRRDGLVLDSLTQPPFQDSDEEINTLSVQPKKA-RYLAAPDDNGDIRVYDLEAK--RLFKTLRGHHTN--LCMTAPFRPNAPWDLVSGGMDGLLL-FWDFSRGRLKFC--IDLNA---GVNALDASSSSSAAAPATEIQLFNPPLVHSVAFASNGKTFAAGLGDATVAVVDF 259
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_008877223.1 (hypothetical protein H310_12068 [Aphanomyces invadans] >ETV94020.1 hypothetical protein H310_12068 [Aphanomyces invadans]) HSP 1 Score: 118.6 bits (296), Expect = 5.700e-23 Identity = 86/270 (31.85%), Postives = 133/270 (49.26%), Query Frame = 0
Query: 24 SASWSMLKGHRGEVLSLDILGLERAGTGRDASGMVLLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVDASRLLAATSTSIYELDL-NFPGVVVREALGTLPSVTNDEINQVAVHPRKGNN-HVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPR-VPYDLACGFHSTCTVGLWDFSKGQKGCR---AVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+ S +L+GH+ V LD+ A+ +LASG DSTCRVWD+ + R +C F + V +V F ++ L AA+S +Y DL P +++ EA T+ D+IN++ +HP + +AV DD G++ LL+ I TLR + +C+ AFRPR YDL G + V W+ G R +++ A G G+ + Q++NPP+V+ LAFS GR VA G+G + + D+
Sbjct: 6 ATSAGVLRGHKSTVNCLDVC----------ATAPDILASGSTDSTCRVWDLRSRRVAQCVANAFA-GDAVNSVVFASSAELYAASSNQVYLFDLRRSPSLILTEAT-TIFEPAADDINRLHIHPMQSKKPWLAVPDDDGSIGLLNMKTH---VIHTLR--GQHSSICSAAAFRPRCAGYDLISGGLDSHLV-FWEVRNDGSGGRMRAKLNMQHADTGLGD--------------ATQIWNPPFVHDLAFSTSGRTVAAALGDGSIALIDF 243
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_008616562.1 (hypothetical protein SDRG_12275 [Saprolegnia diclina VS20] >EQC29995.1 hypothetical protein SDRG_12275 [Saprolegnia diclina VS20]) HSP 1 Score: 117.5 bits (293), Expect = 1.300e-22 Identity = 81/231 (35.06%), Postives = 119/231 (51.52%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNN-HVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPR-VPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
LLASG +DST R+WD+ + +C T F + V +VAF A+ L A+ +Y DL G++V+EA T+ DEIN +AVHP +AV DD G + +++ K ++T R + +LC AFRP+ YDL G H C + W+ S G R A + + DD + A Q++NPP+V LAF+A GR +A G+G V + D+
Sbjct: 32 LLASGSQDSTVRIWDLRTNKVAQCITQAFA-GDAVSSVAFPSATDLYVASHNQLYTFDLRNAGMIVKEAT-TILEPAADEINTLAVHPSHAKKPWLAVPDDEGEIGIVNLQT---KALQTTLR-GQHTNLCMSAAFRPKCAGYDLVTGGHD-CQLVFWEVS----GDRGSGRMRAKLSMQDIIGDD-----ALADGTQMWNPPFVYDLAFNAAGRSLAAALGDGSVVLLDF 246
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_012205633.1 (hypothetical protein SPRG_11098 [Saprolegnia parasitica CBS 223.65] >KDO23650.1 hypothetical protein SPRG_11098 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 117.1 bits (292), Expect = 1.700e-22 Identity = 79/231 (34.20%), Postives = 120/231 (51.95%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNN-HVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPR-VPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
LLASG +DST R+WD+ + +C T +F + V +VAF A+ L A+ +Y DL G++V+EA T+ DEIN +AVHP +AV DD G + +++ K ++T R + +LC AFRP+ YDL G H C + W+ + G R A + + DD + A Q++NPP+V +AF+A GR +A G+G V + D+
Sbjct: 29 LLASGSQDSTVRIWDLRTNKVAQCITQVFA-GDAVSSVAFPSATDLYVASHNQLYTFDLRNTGMIVKEAT-TILEPAADEINTLAVHPSHAKKPWLAVPDDEGEIGIVNLQT---KALQTTLR-GQHTNLCMSAAFRPKCAGYDLVTGGHD-CQLVFWEMN----GDRCTGRMRAKLSMQDIIGDD-----ALADGTQMWNPPFVYDVAFNAAGRSLAAALGDGSVVLLDF 243
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_016608948.1 (hypothetical protein SPPG_04009 [Spizellomyces punctatus DAOM BR117] >KND00909.1 hypothetical protein SPPG_04009 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 112.1 bits (279), Expect = 5.400e-21 Identity = 82/256 (32.03%), Postives = 123/256 (48.05%), Query Frame = 0
Query: 29 MLKGHRGEVLSLDILGLERAGTGRDASGMVLLASGGEDSTCRVWDVAAGRAIKCYTGMFEDNEGVGAVAFVDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGI 285
+L+GH VL LD+ A +ASG ED T RVWD+A + ++ G+ E+N V +V F L A + DL PG+V+ ++ + DEIN +A++ ++ +A ADDSG VT+ D +R + + R+ +N L TCV F+P +D+ G + T+ WDFS KGC + P + S Q NPP+V+SL FS R +A G G+G V +
Sbjct: 12 ILRGHTAPVLCLDLCSKATASK---------VASGAEDGTARVWDIATAKCVRGLRGL-EENTEVSSVCFSGDDLLYVAAGHQVRLFDLRSPGLVLNQST-QIGVSAEDEINHIALNEKR--TFLATADDSGHVTVTD--LRTTRVFKRFRQRHEN--LATCVRFQPNRSWDVWSGGMDS-TLIHWDFS---KGCPV--------------EQFPFATSEQSQSAQSVNPPFVHSLEFSPDARLLAAGLGDGSVAL 232
BLAST of NO27G01000 vs. NCBI_GenBank
Match: ETO70782.1 (hypothetical protein F444_12762 [Phytophthora parasitica P1976]) HSP 1 Score: 111.3 bits (277), Expect = 9.200e-21 Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCY---TGMFEDN---EGVGAVAF------VDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+LASGG+D TCR+WDV R KC+ + DN V ++AF +++ + A + D+ P ++V A + DEIN ++ HP K ++ DD+G + + D + +TLR N +C+ FRP P+DL G + +WDFS+G+ ++D++ G G + ++ S + + QLFNPP V+SLAF++ G+ A G G+ + + ++
Sbjct: 30 VLASGGDDGTCRLWDVRTARVTKCFDVKKALGTDNMDESAVNSLAFGKTSEGAESAYIYVAAGNKVLTFDMRQPALIVNCADREVFQHNEDEINVLSRHPGKHGKFLSAPDDTGDICVYD--LESHCLFKTLRGQHTN--ICSTAPFRPNAPWDLISGGMDGMLL-IWDFSRGRVKF-SIDLNTGVNGLG----NSASVEESGSGTQQLFNPPLVHSLAFASNGKSFAAGLGDSSIAVVNF 260
BLAST of NO27G01000 vs. NCBI_GenBank
Match: ETI42164.1 (hypothetical protein F443_12654 [Phytophthora parasitica P1569]) HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20 Identity = 72/241 (29.88%), Postives = 121/241 (50.21%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYT---GMFEDN---EGVGAVAF------VDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+LASGG+D TCR+WDV R KC+ + DN V ++AF +++ + A + D+ P ++V A + DEIN ++ HP K ++ DD+G + + D + +TLR N +C+ FRP P+DL G + WDFS+G+ ++D++ G G + ++ S + + QLFNPP V+SLAF++ G+ A G G+ + + ++
Sbjct: 30 VLASGGDDGTCRLWDVRTARVTKCFNVKKALGTDNMDESAVNSLAFGKTSEGAESAYIYVAAGNKVLTFDMRQPALIVNCADREVFQHNEDEINVLSRHPGKHGKFLSAPDDTGDICVYD--LESHCLFKTLRGQHTN--ICSTAPFRPNAPWDLISGGMDGMLL-FWDFSRGRVKF-SIDLNTGVNGLG----NSASVEESGSGTQQLFNPPLVHSLAFASNGKSFAAGLGDSSIAVVNF 260
BLAST of NO27G01000 vs. NCBI_GenBank
Match: XP_008909000.1 (hypothetical protein PPTG_14209 [Phytophthora parasitica INRA-310] >ETL88836.1 hypothetical protein L917_12131 [Phytophthora parasitica] >ETN05478.1 hypothetical protein PPTG_14209 [Phytophthora parasitica INRA-310] >ETP40015.1 hypothetical protein F442_12564 [Phytophthora parasitica P10297] >KUF90151.1 T-complex protein 1 subunit beta [Phytophthora nicotianae] >KUF90779.1 WD repeat-containing protein 53 [Phytophthora nicotianae]) HSP 1 Score: 110.9 bits (276), Expect = 1.200e-20 Identity = 72/241 (29.88%), Postives = 121/241 (50.21%), Query Frame = 0
Query: 59 LLASGGEDSTCRVWDVAAGRAIKCYT---GMFEDN---EGVGAVAF------VDASRLLAATSTSIYELDLNFPGVVVREALGTLPSVTNDEINQVAVHPRKGNNHVAVADDSGTVTLLDSSVRPPKPIRTLRRSSDNYDLCTCVAFRPRVPYDLACGFHSTCTVGLWDFSKGQKGCRAVDVSAAAVGEGECEDDDPTIAPSAASSCQLFNPPYVNSLAFSACGRWVAVGKGNGEVGIYDY 288
+LASGG+D TCR+WDV R KC+ + DN V ++AF +++ + A + D+ P ++V A + DEIN ++ HP K ++ DD+G + + D + +TLR N +C+ FRP P+DL G + WDFS+G+ ++D++ G G + ++ S + + QLFNPP V+SLAF++ G+ A G G+ + + ++
Sbjct: 30 VLASGGDDGTCRLWDVRTARVTKCFNVKKALGTDNMDESAVNSLAFGKTSEGAESAYIYVAAGNKVLTFDMRQPALIVNCADREVFQHNEDEINVLSRHPGKHGKFLSAPDDTGDICVYD--LESHCLFKTLRGQHTN--ICSTAPFRPNAPWDLISGGMDGMLL-FWDFSRGRVKF-SIDLNTGVNGLG----NSASVEESGSGTQQLFNPPLVHSLAFASNGKSFAAGLGDSSIAVVNF 260 The following BLAST results are available for this feature:
BLAST of NO27G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G01000 ID=NO27G01000|Name=NO27G01000|organism=Nannochloropsis oceanica|type=gene|length=2316bpback to top protein sequence of NO27G01000.1 >NO27G01000.1-protein ID=NO27G01000.1-protein|Name=NO27G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bpback to top Synonyms
Publications
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