NO27G00880, NO27G00880 (gene) Nannochloropsis oceanica

Overview
NameNO27G00880
Unique NameNO27G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length838
Alignment locationchr27:300505..301342 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:300505..301342 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO27G00880 vs. NCBI_GenBank
Match: EWM21005.1 (hypothetical protein Naga_100081g12 [Nannochloropsis gaditana])

HSP 1 Score: 216.1 bits (549), Expect = 7.400e-53
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0
Query:   15 MAMSSAHAATLKNVAGKSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTADMIKQCMDNAKRERXXXXXXXXXXGAELEHVHVKI 148
            MA+ SAHAATLKNVAGKS+VQLYRDCLRVADHIASKSPKGIALR MLRSEFKK+A V+D KQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTT+DMIKQCM+NAKRER          GAELEH HVKI
Sbjct:    1 MALPSAHAATLKNVAGKSSVQLYRDCLRVADHIASKSPKGIALRKMLRSEFKKNAAVDDAKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTSDMIKQCMNNAKRERERKEKAERGEGAELEHFHVKI 133          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: CBN74171.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-15
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARM 108
            +S+ +LYRDCLR+ DHIASKSPKG  LR +LR+EFKK+    D  ++E LK  A RGL+NYL++ESGS +P+++ RM
Sbjct:    9 RSSTRLYRDCLRLVDHIASKSPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRM 85          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_008868665.1 (hypothetical protein H310_05672 [Aphanomyces invadans] >ETW02060.1 hypothetical protein H310_05672 [Aphanomyces invadans])

HSP 1 Score: 88.2 bits (217), Expect = 2.300e-14
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTADMIKQCMDNAK 124
            ++++QLYRDCLR+A+HI  K+ KG A+R+MLR+EF+K  N  D  ++E LK NA RGL+NYL+  + SK+ K++  +  T     K    NA+
Sbjct:    9 RTSLQLYRDCLRLANHIGGKTKKGYAIRSMLRAEFRKSMNETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAKDSAANAE 101          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_009833708.1 (hypothetical protein H257_09247 [Aphanomyces astaci] >ETV76796.1 hypothetical protein H257_09247 [Aphanomyces astaci])

HSP 1 Score: 82.8 bits (203), Expect = 9.800e-13
Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTADMIK 117
            ++++QLYRDCLR+A+HI  K+ KG A+R+MLR+EF+K  +  D  ++E LK NA RGL+NYL+  + SK+ K++  +  T     K
Sbjct:    9 RTSLQLYRDCLRLANHIGGKTKKGEAIRSMLRAEFRKSIHETDEVKIENLKANAVRGLSNYLVLANSSKDGKLKQAIRTTDESSAK 94          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_012204494.1 (hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65] >KDO24847.1 hypothetical protein SPRG_09680 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-12
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 111
            +S++QLYRDCLR+A HI   S KG A+R+MLR+EF+K  +  D  ++E LK NA RGL+NYL+  + SK+ K++  +  T
Sbjct:    8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRSMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: OWY97100.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 82.0 bits (201), Expect = 1.700e-12
Identity = 37/86 (43.02%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   27 NVAGKSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTA 113
            N   ++ +QLYRDCLR+A HI   S KG+A+++++R EF+K  +  D +++E LK NA RGL+NYL+  + SK+ ++   M+K +A
Sbjct:    4 NQVTRTTIQLYRDCLRLAKHIGGNSKKGLAIKDLVRREFEKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMHKKSA 89          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_008611144.1 (hypothetical protein SDRG_07104 [Saprolegnia diclina VS20] >EQC35394.1 hypothetical protein SDRG_07104 [Saprolegnia diclina VS20])

HSP 1 Score: 81.6 bits (200), Expect = 2.200e-12
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKT 111
            +S++QLYRDCLR+A HI   S KG A+R MLR+EF+K  +  D  ++E LK NA RGL+NYL+  + SK+ K++  +  T
Sbjct:    8 RSSLQLYRDCLRLAKHIGGNSRKGEAIRTMLRAEFRKSMHETDELKIENLKANAVRGLSNYLVLANSSKDGKLKQAIKST 87          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_002997572.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY68587.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 80.9 bits (198), Expect = 3.700e-12
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 0
Query:   27 NVAGKSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNK 110
            N   ++ +QLYRDCLR+A HI   S KG A+R ++R EF K  +  D +++E LK NA RGL+NYL+  + SK+ +++  MNK
Sbjct:    5 NQVTRTTIQLYRDCLRLAKHIGGNSKKGQAIRELVRREFDKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLQEAMNK 87          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: XP_024575076.1 (Complex 1 LYR protein [Plasmopara halstedii] >CEG38707.1 Complex 1 LYR protein [Plasmopara halstedii])

HSP 1 Score: 79.7 bits (195), Expect = 8.300e-12
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 0
Query:   31 KSAVQLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTA 113
            +S  QLYRDCLR+A HI   S KG A+++++R EF K  +  D +++E LK NA RGL+NYL+  + SK+ ++R  MNK ++
Sbjct:    8 RSTKQLYRDCLRLAKHIGGNSKKGQAIKDLIRREFDKGRSEVDIEKIETLKANAVRGLSNYLMLANSSKDQRLRDAMNKKSS 89          
BLAST of NO27G00880 vs. NCBI_GenBank
Match: POM79750.1 (mitochondrial protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 79.3 bits (194), Expect = 1.100e-11
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 0
Query:   35 QLYRDCLRVADHIASKSPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKEPKIRARMNKTTAD 114
            QLYRDCLR+A HI   S KG A++ ++R EF+K  +  D +++E LK NA RGL+NYL+  + SK+ ++   MNK + D
Sbjct:   37 QLYRDCLRLAKHIGGNSKKGQAIKELVRREFEKGRSETDPEKIEALKANAVRGLSNYLMLANSSKDQRLHDAMNKKSKD 115          
The following BLAST results are available for this feature:
BLAST of NO27G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21005.17.400e-5384.21hypothetical protein Naga_100081g12 [Nannochlorops... [more]
CBN74171.11.200e-1557.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_008868665.12.300e-1445.16hypothetical protein H310_05672 [Aphanomyces invad... [more]
XP_009833708.19.800e-1345.35hypothetical protein H257_09247 [Aphanomyces astac... [more]
XP_012204494.11.700e-1248.75hypothetical protein SPRG_09680 [Saprolegnia paras... [more]
OWY97100.11.700e-1243.02putative mitochondrial protein [Phytophthora megak... [more]
XP_008611144.12.200e-1248.75hypothetical protein SDRG_07104 [Saprolegnia dicli... [more]
XP_002997572.13.700e-1245.78conserved hypothetical protein [Phytophthora infes... [more]
XP_024575076.18.300e-1246.34Complex 1 LYR protein [Plasmopara halstedii] >CEG3... [more]
POM79750.11.100e-1146.84mitochondrial protein [Phytophthora palmivora var.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005094NSK005094Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00880.1NO27G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603565gene_8676Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100081g12gene9416Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00880.1NO27G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00880 ID=NO27G00880|Name=NO27G00880|organism=Nannochloropsis oceanica|type=gene|length=838bp
ATGCCATATAGACAGCCCCAGCTACGCGCATCGGCCGTCACCATGGCTAT
GTCCTCGGCGCACGCCGCCACCCTCAAGAATGTTGCCGGCAAAAGCGCGG
TGCAGgtaagacgacagcttttgtgtgcgtgaacagaagttctacatcaa
aacgcacgtatccgtgactcatcgctctctacgcatgatacagTTGTACC
GGGACTGTCTCCGGGTCGCTGACCACATAGCCAGCAAGgtgagcatatta
tttaaagcccttggcttgatttctgtcgagcgttcatgtggcctacggag
ctcattattccttttccttgacgtcccctcttttccacttccatcttcag
AGCCCCAAGGGCATCGCCTTGCGGAATATGCTTCGGTCGGAGTTCAAAAA
GCACGCCAACGTAGAAGACGGCAAGCAGGTGGAGCAGCTTAAGATGAAgt
gagtcgtagttgtttcaggaaaggttctaaaagtgtcaacacaagacatt
tatcactttcttttcctcaacacatgacagCGCGGCAAGAGGGCTGGCCA
ACTACCTACTGTACGAGTCAGGAAGgtgcgtttttcttaattattttgta
caatacaatttctactgggtccctgatgtcactttctcatttgatcgcat
gctacacccctccttccttctctccctccccttgcagCAAAGAGCCCAAG
ATCCGCGCCCGCATGAACAAAACCACCGCCGACATGATCAAGCAATGCAT
GGACAACGCCAAGCGAGAACGAGAACGGAAAGAAAAGGTCGAAAAAGGAG
AGGGTGCAGAATTAGAGCATGTCCACGTGAAAATCTAA
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protein sequence of NO27G00880.1

>NO27G00880.1-protein ID=NO27G00880.1-protein|Name=NO27G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MPYRQPQLRASAVTMAMSSAHAATLKNVAGKSAVQLYRDCLRVADHIASK
SPKGIALRNMLRSEFKKHANVEDGKQVEQLKMNAARGLANYLLYESGSKE
PKIRARMNKTTADMIKQCMDNAKRERERKEKVEKGEGAELEHVHVKI*
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Synonyms
Publications