NO27G00820, NO27G00820 (gene) Nannochloropsis oceanica

Overview
NameNO27G00820
Unique NameNO27G00820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3092
Alignment locationchr27:287336..290427 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:287336..290427 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO27G00820 vs. NCBI_GenBank
Match: XP_005854928.1 (hypothetical protein NGA_0370410 [Nannochloropsis gaditana CCMP526] >EKU21430.1 hypothetical protein NGA_0370410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 232.3 bits (591), Expect = 6.100e-57
Identity = 145/306 (47.39%), Postives = 193/306 (63.07%), Query Frame = 0 
Query:  596 LLARTPVATQTALYVASLCLAEEDEEGGEGILEGGRGKKARRRKSREGQ-GEGATEGRKQERQAGLWRLLQALIEAGKYPLREHPTLLLQLLQRGRKEVVAAALAGPGDLSEKSIVQSLHAVLRSPSSL----PXXXXXXXXXXXXXXXXXXXXXGVYAREVFKLVGLAVCRPCCPVFLRAALSEGMDGPSAALLLVLLRSLLEKTIDGKAGGGGREEECILTWLEALLDAKFVSMVVQGSRE-GGQGGKEREVVRKVLMGVRECARRGAMACEALELVGGYFAQFKRAGQSFQAISDYSLESISI 896
            +LA   VAT+TAL+VA+LCL E+   G  G     +G  A  R   +GQ   G  EGRK+ER   +W LL+ALIEAGK+PLRE   L+L+L++ G  E+  A LAGPG++SE++IV  L  +LR    L                          G+ AREV +L GLAV RPCC  FLR AL+  MDGPSAALLLVLL++LLE+ + G  G G   EE +LTWLE+LLDAKFV++VV+G RE  G+   +  V+R+VL   +E  +  A++C+ALE+V GY AQF+RAG+S Q I DYSL+ + +
Sbjct:    1 MLAPLHVATETALHVAALCLGEDAGVGTVGSRLADKGSWAAPRTKVKGQAARGGGEGRKEERVV-MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAV-GAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 304
[Close]
BLAST of NO27G00820 vs. NCBI_GenBank
Match: XP_005853804.1 (hypothetical protein NGA_0370420 [Nannochloropsis gaditana CCMP526] >EKU22552.1 hypothetical protein NGA_0370420 [Nannochloropsis gaditana CCMP526] >EWM21013.1 hypothetical protein Naga_100081g6 [Nannochloropsis gaditana])

HSP 1 Score: 206.8 bits (525), Expect = 2.700e-49
Identity = 117/241 (48.55%), Postives = 157/241 (65.15%), Query Frame = 0 
Query:  660 LWRLLQALIEAGKYPLREHPTLLLQLLQRGRKEVVAAALAGPGDLSEKSIVQSLHAVLRSPSSL----PXXXXXXXXXXXXXXXXXXXXXGVYAREVFKLVGLAVCRPCCPVFLRAALSEGMDGPSAALLLVLLRSLLEKTIDGKAGGGGREEECILTWLEALLDAKFVSMVVQGSRE-GGQGGKEREVVRKVLMGVRECARRGAMACEALELVGGYFAQFKRAGQSFQAISDYSLESISI 896
            +W LL+ALIEAGK+PLRE   L+L+L++ G  E+  A LAGPG++SE++IV  L  +LR    L                          G+ AREV +L GLAV RPCC  FLR AL+  MDGPSAALLLVLL++LLE+ + G  G G   EE +LTWLE+LLDAKFV++VV+G RE  G+   +  V+R+VL   +E  +  A++C+ALE+V GY AQF+RAG+S Q I DYSL+ + +
Sbjct:    1 MWVLLRALIEAGKFPLREEAPLVLRLVEEGPLELTEAVLAGPGEVSERTIVCLLRRLLRPQEHLLTPISASSPATQEHRDAGQPHKGDEEGIPAREVARLAGLAVRRPCCRAFLRTALAVEMDGPSAALLLVLLQALLEEAV-GAGGKGRPTEEAVLTWLESLLDAKFVALVVEGKRERAGEAWGDEGVLRRVLASTQERIQAAALSCQALEVVEGYIAQFRRAGESLQVIPDYSLDVLPV 240
[Close]
BLAST of NO27G00820 vs. NCBI_GenBank
Match: EWM20994.1 (hypothetical protein Naga_100081g7 [Nannochloropsis gaditana])

HSP 1 Score: 193.4 bits (490), Expect = 3.100e-45
Identity = 101/167 (60.48%), Postives = 121/167 (72.46%), Query Frame = 0 
Query:    1 MAGSTTSSLGASTMFTKIGTISVSGKPVGLSWVGGRGEYLLFTSPSQVILYRVQDGSRLREWSFRPTKVLAFISAVRAASAQGLLVGLQGRRKLVAWSDKGSVSLAAGGXXXXXXXGPEGMKSVETTFPVSHLEVSSVGVAWCIGQ--EGDRLQVACYSTVGKTALT 166
            MA    S      +FT++G + +SGKPVGL WVGGRGE+ LFTSPSQV+LY   DG+R REWSFRP K LAF SAV AASAQGLL+G+QGRR+LVAW DK S +   G        GPEG+ SVET F VS L+VS+ G+AWC GQ  +G  L+VACYSTVG++ALT
Sbjct:    3 MAAGMRSRSKNPVVFTEVGKVEISGKPVGLDWVGGRGEHFLFTSPSQVLLYSAFDGTRQREWSFRPNKSLAFSSAVVAASAQGLLLGVQGRRRLVAWPDKASQTGWGGS-------GPEGLTSVETAFDVSKLDVSAAGMAWCSGQSKQGQELRVACYSTVGRSALT 162
The following BLAST results are available for this feature:
BLAST of NO27G00820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854928.16.100e-5747.39hypothetical protein NGA_0370410 [Nannochloropsis ... [more]
XP_005853804.12.700e-4948.55hypothetical protein NGA_0370420 [Nannochloropsis ... [more]
EWM20994.13.100e-4560.48hypothetical protein Naga_100081g7 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005088NSK005088Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00820.1NO27G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603546gene_8671Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100081g6gene9411Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00820.1NO27G00820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00820 ID=NO27G00820|Name=NO27G00820|organism=Nannochloropsis oceanica|type=gene|length=3092bp
ATGGCCGGCAGCACGACTAGCAGCCTCGGAGCCTCCACCATGTTCACCAA
AATAGGCACCATCAGCGTCTCCGGCAAGCCCGTGGGCCTTAGCTGGGTGG
GTGGACGCGGAGAATATCTACTCTTCACGTCGCCATCCCAAGTCATATTG
TATAGAGTGCAAGATGGTTCCCGGTTGCGAGAATGGTCCTTCCGACCGAC
GAAAGTCTTGGCTTTTATATCCGCCGTGCGTGCAGCCTCTGCACAAGGGC
TATTAGTGGGGTTGCAGGGGAGGCGTAAGCTAGTAGCGTGGTCGGACAAA
GGTTCTGTAAGTTTGGCTGCTGGAGGAGCGGGAGGAGCGGCAGGCGTGGG
CCCAGAGGGGATGAAAAGTGTCGAGACGACTTTTCCTGTTTCTCACTTGG
AAGTGAGCTCTGTGGGTGTTGCATGGTGTATTGGCCAGGAGGGTGATAGG
CTGCAAGTGGCCTGTTATTCGACTGTGGGCAAAACGGCATTGACTCTCCT
TGCGTCCTCCTCCTCCTCCACCTCACAATCCTCACCATCCTCTACATCAT
CCTCAGTGTCTTCCTCTCTCGTACACCCTTCAAAGCGCCTCTTACTGCTT
TTTACCACTGACGGCACCCTTTACCTCTACCGTTGCCCTGAAACCACCAT
TCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAAAAATAAGAGCGCGC
AGCAGACACTGACATCCCCTGCTGCTCCTCGACCGCTCACCATCACAAGT
CTCTCTCCTACCTCCTCATCGCTCGCCCTCCACGCGTCGGGAATGATGTG
GAGCGGCATGGGTCAAGACATGGTTTACTTGTGGACTGTTGAGAAAGGAG
AAACGGAAGGAGGGAGGGGAAGAGGGCTTTTCCTACGCATGACGCGCGTG
GCAATCGGAAGGGATGTAGGGAAGGAGGAAGGGGCGGCAAGGCTTTCAAG
TATCAAATTATACACCAAGACGCTGGTCGATCCAGCAGGGGTAGAAACAG
CAGCAGCAGTGGCGGTGGCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCA
AAAAAGAGGTCAAGCCCCACAACTTCCTACACCCCTCCCTGTTCTTTCCT
CCCTCTCTCGGTCCAGACAGTGGGCATGCAAGCACAGGGTCTTATCGTTA
CGGCCGTGGAGGAAGTAGAGAGAAAGGGCAGCGGGGAAGGAGGAGTCCGG
TTGCAAGCATGGGATGCAGAGCACGGAGTAGTCGTAGGAGAGGCCTGCCC
CCCCTCCTCCTCGTTCTCCCTCCCTTCCACTTCGTCCCTGTTTGCATGTG
GTGAAGGCGTCATAGCTAGTGGTAGTCCTTCTACCGATAAGGTGGCTGCA
TGGAGGGTGGAGTCAAGAGAAGGAGGAGGAGAAGGCACTGGGCTAAGACG
TGCCTTGGGGAAACTCGCTGTAACCACTGCTGCTGCTGCGGCATGTGCTA
CCGGTACTGTTGCTGCTCCCCTTGTGACAATGACATTTAAGAGCAGTGAG
GTCGGTTGGGTTTGTCAGGAAAGAGAAGAAGACGCAACAGGGGCAGCAGC
AGGAGCTGCAGCAGCAGCAGCGGGTGGTCTGACGCCGGATGATGCAGTCG
ATCAGTTACTCCAATTGCTCTTCGCAGCAGAGCAGGAACAGCAACAGCAG
TACCAGCACCAGCACCAGCACCAGCAGAATGGAAAGGCTGATACGAAGAA
GAAGGAGGAGGAAGAGAGAAACGGTAGTGGCAAAAGCTGCAGCAGCAGTA
AGAAGAGAAAGCGTGCCAAGCTCACAGGAGCCGTGCTTCTGGCCCGTACC
CCTGTAGCAACACAGACAGCCCTGTATGTTGCTTCTCTTTGTCTTGCCGA
GGAAGATGAGGAAGGGGGGGAGGGGATTTTGGAGGGAGGGAGGGGAAAGA
AGGCACGGCGCAGGAAAAGCAGAGAGGGGCAGGGGGAGGGAGCGACGGAG
GGGCGGAAACAGGAACGACAGGCGGGGTTATGGCGTCTCCTACAGGCCTT
GATCGAAGCGGGAAAATATCCATTAAGGGAGCATCCTACTCTCCTGCTGC
AGTTGCTGCAGCGAGGGAGAAAGGAAGTGGTAGCAGCAGCATTGGCAGGG
CCCGGTGACTTGTCTGAAAAATCCATCGTCCAGTCACTACACGCGGTGTT
ACGTAGCCCCTCCTCCCTTCCTCCCTCTTCTATCACCATCACCTCGCAAG
AACAGCAGCAGCAACAGCAGCAGCAGCTGAACAATGGGGTGTACGCACGC
GAAGTTTTTAAGCTCGTCGGGCTTGCTGTTTGTCGTCCTTGCTGTCCTGT
CTTCCTTCGGGCTGCCTTGTCTGAAGGGATGGATGGACCCAGCGCAGCGC
TACTGCTGGTGCTACTGCGGTCACTGCTGGAGAAAACCATAGATGGCAAA
GCAGGCGGTGGTGGGAGGGAGGAAGAGTGTATTTTGACATGGTTAGAAGC
GCTTTTGGATGCGAAGTTTGTCAGTATGGTCGTTCAGGGAAGTAGGGAGG
GAGGGCAGGGAGGGAAGGAAAGGGAGGTTGTGAGGAAAGTGTTGATGGGG
GTGAGGGAGTGCGCGAGGAGGGGGGCCATGGCTTGTGAGGCACTGGAGTT
AGTGGGAGGGTATTTTGCTCAGTTTAAGAGGGCGGGACAAAGTTTTCAGG
CCATTTCGGATTACTCCCTTGAGTCGATCAGCATTTGAGGGAAGGGTGGA
GGGAGGGAAGGGTGGAGGGAGGGAGAAGGGGGGGGTATTTGGTTCAGATA
ACAGATCGGGGTGGGCTTATAGGTCATGTGGATTCATATCATGAATGTGT
CCAGATCAAGACATGAGCTAAGTAAGCTTGAACACGGGAAGGAAGATGAA
CTGAAGATGGGTTCCGGAATGCGTGTGCCTCAGCAGAGACGCAGCCATTT
TCACCGTCGTTTCTTGTCCTAGATGCGTGGACTGAAATTGAGAGGTTCCG
CTGAATTAGTGAGGAAGAGGAAGGGGGAAAGTGAGGGTTCGCTGGCTGAG
CAAGGCCACAACCCACAAAGTAGAAATACCTTGAAGAATTACCTTGAAGA
AGAAACACTTTAAAAAAGAAACACAAAATACCAAGTTGGATG
back to top

protein sequence of NO27G00820.1

>NO27G00820.1-protein ID=NO27G00820.1-protein|Name=NO27G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=896bp
MAGSTTSSLGASTMFTKIGTISVSGKPVGLSWVGGRGEYLLFTSPSQVIL
YRVQDGSRLREWSFRPTKVLAFISAVRAASAQGLLVGLQGRRKLVAWSDK
GSVSLAAGGAGGAAGVGPEGMKSVETTFPVSHLEVSSVGVAWCIGQEGDR
LQVACYSTVGKTALTLLASSSSSTSQSSPSSTSSSVSSSLVHPSKRLLLL
FTTDGTLYLYRCPETTIPSSSSSSSSSSKNKSAQQTLTSPAAPRPLTITS
LSPTSSSLALHASGMMWSGMGQDMVYLWTVEKGETEGGRGRGLFLRMTRV
AIGRDVGKEEGAARLSSIKLYTKTLVDPAGVETAAAVAVASSSSSSSSTS
KKRSSPTTSYTPPCSFLPLSVQTVGMQAQGLIVTAVEEVERKGSGEGGVR
LQAWDAEHGVVVGEACPPSSSFSLPSTSSLFACGEGVIASGSPSTDKVAA
WRVESREGGGEGTGLRRALGKLAVTTAAAAACATGTVAAPLVTMTFKSSE
VGWVCQEREEDATGAAAGAAAAAAGGLTPDDAVDQLLQLLFAAEQEQQQQ
YQHQHQHQQNGKADTKKKEEEERNGSGKSCSSSKKRKRAKLTGAVLLART
PVATQTALYVASLCLAEEDEEGGEGILEGGRGKKARRRKSREGQGEGATE
GRKQERQAGLWRLLQALIEAGKYPLREHPTLLLQLLQRGRKEVVAAALAG
PGDLSEKSIVQSLHAVLRSPSSLPPSSITITSQEQQQQQQQQLNNGVYAR
EVFKLVGLAVCRPCCPVFLRAALSEGMDGPSAALLLVLLRSLLEKTIDGK
AGGGGREEECILTWLEALLDAKFVSMVVQGSREGGQGGKEREVVRKVLMG
VRECARRGAMACEALELVGGYFAQFKRAGQSFQAISDYSLESISI*
back to top
Synonyms
Publications