NO27G00780, NO27G00780 (gene) Nannochloropsis oceanica

Overview
NameNO27G00780
Unique NameNO27G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1685
Alignment locationchr27:276460..278144 +

Link to JBrowse

Properties
Property NameValue
DescriptionGCK domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:276460..278144 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012891GCK
Homology
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_005853805.1 (hypothetical protein NGA_0370602 [Nannochloropsis gaditana CCMP526] >XP_005854929.1 hypothetical protein NGA_0370601 [Nannochloropsis gaditana CCMP526] >EKU21431.1 hypothetical protein NGA_0370601 [Nannochloropsis gaditana CCMP526] >EKU22553.1 hypothetical protein NGA_0370602 [Nannochloropsis gaditana CCMP526] >EWM21011.1 GCK domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 168.3 bits (425), Expect = 4.000e-38
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 0
Query:  158 PAAGIRAVLDAMEGEEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            PA  I AVL  ME EEDEG+YD VELEETECPLCHFMRASPCG TWVRWEKCIH HKSK+EDFV PCAR+TLKLAECIQ+HQ+DFPPTLR
Sbjct:  112 PAGDIAAVLSEME-EEDEGRYDSVELEETECPLCHFMRASPCGATWVRWEKCIHFHKSKEEDFVGPCARVTLKLAECIQQHQNDFPPTLR 200          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_022997117.1 (uncharacterized protein LOC111492108 [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 1.800e-9
Identity = 36/100 (36.00%), Postives = 50/100 (50.00%), Query Frame = 0
Query:  148 HEERKEAIGPPAAGIRAVLDAMEGEEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            H E K     P   +++   +  G EDEG  D  E EE EC  C FM+   C  ++V WEKCI   +   ED V  C  +T  L +C++ H D + P L+
Sbjct:   34 HSEEKS----PQESVQSGKISESGGEDEGGEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILK 129          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_006846199.1 (uncharacterized protein LOC18436111 [Amborella trichopoda] >ERN07874.1 hypothetical protein AMTR_s00012p00219010 [Amborella trichopoda])

HSP 1 Score: 71.6 bits (174), Expect = 5.100e-9
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0
Query:  167 DAME---GEEDEGKYD--DVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            DAM+    E D+G  D   VE+EE EC  C FM+   CG  ++ WEKC+   ++K ED V  C  +T  L +C+ +H   + P LR
Sbjct:   17 DAMDNGASELDQGSGDGAGVEVEEEECGFCLFMKGGGCGEEFIAWEKCVEEGETKKEDIVEKCFEVTSYLKKCMDEHSAYYEPILR 102          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_016205753.1 (uncharacterized protein LOC107646076 isoform X1 [Arachis ipaensis])

HSP 1 Score: 71.2 bits (173), Expect = 6.700e-9
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0
Query:  172 EEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            EE EGK ++ E EE EC  C FM++  C  +++ WEKC    +   ED V  C  IT  L +C++ H D + P LR
Sbjct:   53 EEKEGKVEEAE-EEGECGFCLFMKSGGCRESFIEWEKCTEEAEKNKEDIVEKCLNITAALKQCMEAHFDYYEPILR 127          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_020959561.1 (uncharacterized protein LOC107646076 isoform X2 [Arachis ipaensis])

HSP 1 Score: 71.2 bits (173), Expect = 6.700e-9
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0
Query:  172 EEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            EE EGK ++ E EE EC  C FM++  C  +++ WEKC    +   ED V  C  IT  L +C++ H D + P LR
Sbjct:   53 EEKEGKVEEAE-EEGECGFCLFMKSGGCRESFIEWEKCTEEAEKNKEDIVEKCLNITAALKQCMEAHFDYYEPILR 127          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_023536143.1 (uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 6.700e-9
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0
Query:  171 GEEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            G EDEG  D  E EE EC  C FM+   C  ++V WEKCI   +   ED V  C  +T  L +C++ H D + P L+
Sbjct:   52 GGEDEGGEDLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILK 128          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: CCA23646.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 69.7 bits (169), Expect = 2.000e-8
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0
Query:  185 ETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQD 241
            + EC  C FMRA PCG  +  WEKC+   K K EDF+  C + TL + +CI++H +
Sbjct:  243 KAECGFCKFMRAGPCGTEFTAWEKCLDECKMKGEDFIEKCGKETLDMRDCIERHPE 298          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_004517013.1 (PREDICTED: myb-like protein X [Cicer arietinum])

HSP 1 Score: 68.9 bits (167), Expect = 3.300e-8
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query:  172 EEDEGKYDDVELEETECPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            EEDE        EE EC  C FM+   C  T+V WE C+   + K+ED V  C+++T +L +C+  H D + P LR
Sbjct:   51 EEDE--------EEGECGFCLFMKGGGCKDTFVDWENCVKEAEDKNEDLVEKCSQVTARLKQCMDAHSDYYEPILR 118          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: XP_013456758.1 (neurofilament medium polypeptide [Medicago truncatula] >KEH30789.1 GCK domain protein [Medicago truncatula])

HSP 1 Score: 67.0 bits (162), Expect = 1.300e-7
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0
Query:  188 CPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            C  C FM+   C  T++ WE C+   + K+ED V  CA +T KL +C+ +H D + P LR
Sbjct:   47 CGFCLFMKGGGCKDTFINWEDCVKEAEDKNEDLVEKCAEVTAKLKQCMDEHSDYYEPILR 106          
BLAST of NO27G00780 vs. NCBI_GenBank
Match: KEH30790.1 (GCK domain protein [Medicago truncatula])

HSP 1 Score: 67.0 bits (162), Expect = 1.300e-7
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0
Query:  188 CPLCHFMRASPCGPTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLR 248
            C  C FM+   C  T++ WE C+   + K+ED V  CA +T KL +C+ +H D + P LR
Sbjct:   47 CGFCLFMKGGGCKDTFINWEDCVKEAEDKNEDLVEKCAEVTAKLKQCMDEHSDYYEPILR 106          
The following BLAST results are available for this feature:
BLAST of NO27G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 16
Match NameE-valueIdentityDescription
XP_005853805.14.000e-3883.33hypothetical protein NGA_0370602 [Nannochloropsis ... [more]
XP_022997117.11.800e-936.00uncharacterized protein LOC111492108 [Cucurbita ma... [more]
XP_006846199.15.100e-939.53uncharacterized protein LOC18436111 [Amborella tri... [more]
XP_016205753.16.700e-940.79uncharacterized protein LOC107646076 isoform X1 [A... [more]
XP_020959561.16.700e-940.79uncharacterized protein LOC107646076 isoform X2 [A... [more]
XP_023536143.16.700e-941.56uncharacterized protein LOC111797387 [Cucurbita pe... [more]
CCA23646.12.000e-844.64conserved hypothetical protein [Albugo laibachii N... [more]
XP_004517013.13.300e-839.47PREDICTED: myb-like protein X [Cicer arietinum][more]
XP_013456758.11.300e-740.00neurofilament medium polypeptide [Medicago truncat... [more]
KEH30790.11.300e-740.00GCK domain protein [Medicago truncatula][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005084NSK005084Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00780.1NO27G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100081g2gene9407Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00780.1NO27G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00780 ID=NO27G00780|Name=NO27G00780|organism=Nannochloropsis oceanica|type=gene|length=1685bp
AATATTACAGACCACACAGTCAACGACGACCTTCCCTCCCATCCCACCTT
CATCTCCACCACGCATCTCAAGGCCTAAACTAGCACTCCACCACACCATC
ATGCTCCACTTCCAAACCCTATTCCGTCGCGCCACCACAGCGATCAGTAG
ATTTCCTCCACACCAACGACGGGTGGCCATGCTGTTGGGGACTGCGGGAG
CCACGGGCGCCGTGGCAAGTCATTTTATGCAAGGTTTTGCGCCCGCCAAG
gtacatgctctttgtaggagaagtggggggccttgaagcaatgtgtcact
gtcattcctttctttctgatacgcaagtgggaaaagacgtgttgtgagta
tgcgtgaatcactaccgcatgcgaataagggtacattcaattgaacacat
tgcttgggtgagctcactgattatctatgccccgcttctcacccccaccc
ttatcatccttgaaaaacacccaaatcagGCGGACGCTGCTCATACACTG
TCAAAATCAGTCAGTACTTCCTCTTCGTCGCCGATTCTCGACAAAAGAGC
CACGATTTCAGGAGGGGGCAGTCCTACTTCCACCAATCTTGCAACCGGCA
GCAGCAGCAGCAGCAGTAGAAGCGACACTCCCTCTTCGATCCCTCCCACT
CTCACCACCTCTAAGACCATCGCCATCGAAGCAGAGACTCAGCATCTCAA
GACTATCAGAAATAGCGACAGCAACAGCAGTGACAGCAACAGCAGTGGCA
GCGGCAGCAGCGGCGACGTTCATGAGGAGAGGAAAGAGGCCATTGGCCCC
CCTGCTGCGGGCATACGCGCTGTGCTCGACGCGATGGAAGGGGAGGAAGA
CGAAGGAAAATACGATGATGTTGAATTGGAAGAGACGGAATGTCCCTTGT
GTCATTTTATGCGTGCCAGCCCGTGTGGCCCCACGTGGGTGAGGTGGGAG
AAGTGCATTCACGCCCACAAGAGCAAAGACGAAGACTTTGTGAATCCATG
TGCGCGCATCACGTTGAAACTCGCGGAGTGCATACAGAAGCATCAGGATG
ATTTCCCACCGACGCTGAGGAATGCTTTGTTGGGTGGTGGGGCTGGAGGG
GAGGAGGAGGAAGAGGATGGAGGGAAGGAAGGAGGGAAGGAGGGAGGTAA
GGAGGAGGTGGTGGGGAAGAAAGAGGAGAAGCCGGCGCTGAAAGGGAGTT
TGACGCTTCTTCATGAGGAGGAGGAGCACGAGCAGGAGAGGGCTCTGTCG
GGAGGCGTCGATGTGGAGGCGGATGAGCATGATCTTTTCAGTCAGTCCCC
ACCGTCACCGCCGGCGGGGAAAGGATCATCGTCGTCGTGAGAGAGCGTGA
GGAAGAGGACAAGATAGGAAATGGGCTAGATAGGTGTGGAGGGGTGTGTG
TGAGTGGGGTCAGGAAGGAAGGAAAAGTGAGAGGGAGGAAATGAGGGTAG
ATTAATGTTAAAAAAAAGTTAGAAATTTGAGCATGGGCACACGCACGAGA
GACCTCTTTGTATTGGGACTCACTCTCACACACTTTCTCTTTCTCTCTCG
CTCGAATGATGTTGCTTGCTTCCCCCCCCCTATGCGGCTGAGTTGGCAAT
TGAAGGGGAGTCACTGCCTGAGCATGTCGGGTACCGGTCACGCGACTCGT
ATGCCGTTATCCAATTAAGAAAGTTTGCTTGTCAT
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protein sequence of NO27G00780.1

>NO27G00780.1-protein ID=NO27G00780.1-protein|Name=NO27G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MLHFQTLFRRATTAISRFPPHQRRVAMLLGTAGATGAVASHFMQGFAPAK
ADAAHTLSKSVSTSSSSPILDKRATISGGGSPTSTNLATGSSSSSSRSDT
PSSIPPTLTTSKTIAIEAETQHLKTIRNSDSNSSDSNSSGSGSSGDVHEE
RKEAIGPPAAGIRAVLDAMEGEEDEGKYDDVELEETECPLCHFMRASPCG
PTWVRWEKCIHAHKSKDEDFVNPCARITLKLAECIQKHQDDFPPTLRNAL
LGGGAGGEEEEEDGGKEGGKEGGKEEVVGKKEEKPALKGSLTLLHEEEEH
EQERALSGGVDVEADEHDLFSQSPPSPPAGKGSSSS*
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Synonyms
Publications