NO27G00620, NO27G00620 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00620 vs. NCBI_GenBank
Match: EWM21030.1 (30s ribosomal protein s16 [Nannochloropsis gaditana]) HSP 1 Score: 168.7 bits (426), Expect = 2.300e-38 Identity = 128/249 (51.41%), Postives = 134/249 (53.82%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERKEVMEAKEKLVVAARAXXXXXXXXXXXXXXXXXXKTFHTDARREGEKEGGVVGMLMGGAVMARVRATLVLPWA 250 MVVRLRLQRFGRHDRPFYRIVAADSRA RDGRFIER LGSYDPIASKDGVKEVRLHSDR+KYWL+VGAQPSDRVAWLMSKYNLLP AP+RP TL+HLPRKE XXXXXXXXXXXXXXXXXX G VGML G AVMAR+R +L LPWA Sbjct: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIER---------------------------------------------------------------------------LGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL------VAGPVGMLTGWAVMARLRESLSLPWA 168
BLAST of NO27G00620 vs. NCBI_GenBank
Match: XP_005853634.1 (small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526] >EKU22726.1 small subunit ribosomal protein S16 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 168.3 bits (425), Expect = 3.100e-38 Identity = 128/249 (51.41%), Postives = 134/249 (53.82%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERKEVMEAKEKLVVAARAXXXXXXXXXXXXXXXXXXKTFHTDARREGEKEGGVVGMLMGGAVMARVRATLVLPWA 250 MVVRLRLQRFGRHDRPFYRIVAADSRA RDGRFIER LGSYDPIASKDGVKEVRLHSDR+KYWL+VGAQPSDRVAWLMSKYNLLP AP+RP TL+HLPRKE XXXXXXXXXXXXXXXXXX G VGML G AVMAR+R +L LPWA Sbjct: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAPRDGRFIER---------------------------------------------------------------------------LGSYDPIASKDGVKEVRLHSDRIKYWLSVGAQPSDRVAWLMSKYNLLPEAPLRPMTLRHLPRKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL------VAGPVGMLTGWAVMARLRDSLSLPWA 168
BLAST of NO27G00620 vs. NCBI_GenBank
Match: GAX12286.1 (small subunit ribosomal protein S16 [Fistulifera solaris]) HSP 1 Score: 104.8 bits (260), Expect = 4.100e-19 Identity = 62/178 (34.83%), Postives = 87/178 (48.88%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERKE 179 MVVRLRLQRFGR PFYR+VAA+++A RDG+F++ V G+Y+PIA++DGVKE+RL +DRLKYWL+VGAQPSDRV+W++ K+ +LP P + S + +P+ ER++ Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANNKAPRDGKFLDIV---------------------------------------------------------------------------GTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103
BLAST of NO27G00620 vs. NCBI_GenBank
Match: GAX21108.1 (small subunit ribosomal protein S16 [Fistulifera solaris]) HSP 1 Score: 104.0 bits (258), Expect = 7.100e-19 Identity = 62/178 (34.83%), Postives = 86/178 (48.31%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERKE 179 MVVRLRLQRFGR PFYR+VAA++ A RDG+F++ V G+Y+PIA++DGVKE+RL +DRLKYWL+VGAQPSDRV+W++ K+ +LP P + S + +P+ ER++ Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANNEAPRDGKFLDIV---------------------------------------------------------------------------GTYNPIANRDGVKEIRLKTDRLKYWLSVGAQPSDRVSWILGKFGILPPPPKKFSPQKMVPKSEREK 103
BLAST of NO27G00620 vs. NCBI_GenBank
Match: XP_002178613.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50278.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 99.8 bits (247), Expect = 1.300e-17 Identity = 64/177 (36.16%), Postives = 81/177 (45.76%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERK 178 MVVRLRLQRFGR PFYR+VAA+ +A RDGR +E V G+Y+PIA+K GVKE+RL +DRLKYWL+VGAQPSDRVAW++ K+ +LP AP + + +KE K Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAANHKAPRDGRHLEVV---------------------------------------------------------------------------GTYNPIANKHGVKEIRLKTDRLKYWLSVGAQPSDRVAWILGKFGVLPPAPRMYNPQKMKTKKESK 102
BLAST of NO27G00620 vs. NCBI_GenBank
Match: CBN73985.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 99.4 bits (246), Expect = 1.700e-17 Identity = 62/182 (34.07%), Postives = 84/182 (46.15%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPS-TLQHLPRKERKEVME 182 M VR+RLQR GR +RPFYR+V ADSRA RDG+FIE V G+Y+P+A++ GVKEV DR++YW++VGAQPSDRVAWL+ ++ +LP + + T Q +PRKE KE+ + Sbjct: 1 MTVRVRLQRLGRRNRPFYRVVVADSRAPRDGKFIELV---------------------------------------------------------------------------GTYNPLATRSGVKEVTFKVDRIRYWISVGAQPSDRVAWLLGQFGILPPKVVPVARTKQTVPRKEWKELQK 107
BLAST of NO27G00620 vs. NCBI_GenBank
Match: XP_002287799.1 (RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335] >EED95242.1 RT16, ribosomal protein 16 mitochondrial small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 99.4 bits (246), Expect = 1.700e-17 Identity = 59/162 (36.42%), Postives = 75/162 (46.30%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAP 163 MVVRLRLQRFGR PFYR+VAADSRA RDG+F+E V G+Y+PIA+ G+KE+RL +DRL+YW++VGAQPSDRVAW++ K+ +LP P Sbjct: 1 MVVRLRLQRFGRTHSPFYRMVAADSRAPRDGKFLEIV---------------------------------------------------------------------------GTYNPIANNAGIKEIRLKADRLRYWISVGAQPSDRVAWILGKFGILPPPP 87
BLAST of NO27G00620 vs. NCBI_GenBank
Match: XP_009041369.1 (hypothetical protein AURANDRAFT_8378, partial [Aureococcus anophagefferens] >EGB03945.1 hypothetical protein AURANDRAFT_8378, partial [Aureococcus anophagefferens]) HSP 1 Score: 99.0 bits (245), Expect = 2.300e-17 Identity = 59/162 (36.42%), Postives = 73/162 (45.06%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAP 163 MVVR+RL RFGR RPFYRIV ADSRA+RDG+ IERV G+YDPI +KDG+KEVRL ++R+KYW++ GAQPS +VAWL+ K +LP P Sbjct: 1 MVVRIRLARFGRKHRPFYRIVVADSRARRDGKHIERV---------------------------------------------------------------------------GTYDPIPAKDGIKEVRLRTERIKYWMSCGAQPSSKVAWLLGKAGILPEQP 87
BLAST of NO27G00620 vs. NCBI_GenBank
Match: XP_024583436.1 (ribosomal protein s16 [Plasmopara halstedii] >CEG47067.1 ribosomal protein s16 [Plasmopara halstedii]) HSP 1 Score: 99.0 bits (245), Expect = 2.300e-17 Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKER 177 MVVRLRL R+GR D PFYRIVAAD+RA RDG+ +E LG+Y+PIA+ DGVKE+R++S R++YW++VGAQPSDRV++L+ N+LP P R T +++P+K+R Sbjct: 1 MVVRLRLARWGRKDVPFYRIVAADARAPRDGKHLE---------------------------------------------------------------------------ILGTYNPIAASDGVKELRVNSQRVQYWMSVGAQPSDRVSYLLGLANVLPMPPTRQHTKKNIPKKDR 101
BLAST of NO27G00620 vs. NCBI_GenBank
Match: OWZ16569.1 (Ribosomal protein S16 [Phytophthora megakarya]) HSP 1 Score: 97.8 bits (242), Expect = 5.100e-17 Identity = 61/177 (34.46%), Postives = 84/177 (47.46%), Query Frame = 0 Query: 1 MVVRLRLQRFGRHDRPFYRIVAADSRAKRDGRFIERVRRFAVGGQGRPSACPLSSLSVCLCSAHCCHLQQQQDLYTSSGQLSPPGTVTLLSLLPXXXXXXXXXXXXXXXPQLGSYDPIASKDGVKEVRLHSDRLKYWLAVGAQPSDRVAWLMSKYNLLPAAPIRPSTLQHLPRKERK 178 MVVRLRL R+GR D PFYRIVAAD+RA RDG+ +E LG+++PIA+ DGVKE+R++S R++YW++VGAQPSDRVA L+ N+LP P R T +++P+K+R+ Sbjct: 1 MVVRLRLARWGRKDLPFYRIVAADARAPRDGKHLE---------------------------------------------------------------------------ILGTFNPIAASDGVKELRVNSQRIRYWMSVGAQPSDRVAHLLGLANVLPMPPTRQYTKKNVPKKDRE 102 The following BLAST results are available for this feature:
BLAST of NO27G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00620 ID=NO27G00620|Name=NO27G00620|organism=Nannochloropsis oceanica|type=gene|length=2093bpback to top protein sequence of NO27G00620.1 >NO27G00620.1-protein ID=NO27G00620.1-protein|Name=NO27G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bpback to top protein sequence of NO27G00620.2 >NO27G00620.2-protein ID=NO27G00620.2-protein|Name=NO27G00620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=255bpback to top Synonyms
Publications
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