NO27G00590, NO27G00590 (gene) Nannochloropsis oceanica

Overview
NameNO27G00590
Unique NameNO27G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3985
Alignment locationchr27:215326..219310 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin unc44
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:215326..219310 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO27G00590 vs. NCBI_GenBank
Match: EWM21034.1 (ankyrin unc44, partial [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 1.400e-28
Identity = 102/286 (35.66%), Postives = 130/286 (45.45%), Query Frame = 0 
Query:    1 MPLPAAPSLLLLXXXXXXXXXXXXXSIILASSIAKIGGDNIALAGLVSDVVSRYPSSLHAPEDFTAWPWVPPLMHAAKTGNMALVNILLENGVDPMRGT-------AALPGGGRKGWQQGNETPLWVACREGHVIVVERLLEEVGQSPPSVPASSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIERCVTTEGVTPLMVASEGGHVEVVRVLLTRFYSSPPSSVGPLHHSSRVLNXXXXXXXXXXXGFTALHLACRQDRSDVLFLLLKAGAKMD 280
            + L  APS LLL              +I ++SIA+IGG+  ALA LVS  +  YP ++HAP DF  WPWVPPL+HA+  GN+ L  +LL+ G DP+RG+       +    G R G     ETP +VAC+ G+  VV RL          V A                                            E  VT  G   LM ASEGGHV VVR LL   Y+       P   SSR              G +ALHLACR+DR++V+ LLL AGA ++
Sbjct:   13 LALALAPSFLLLLTGPSNLLPPDHARVIFSASIARIGGNQSALATLVSQALLHYPDAVHAPPDFDVWPWVPPLLHASAGGNVELTEVLLQAGADPLRGSRRHRDPPSQDKDGDRVGRGGEGETPFYVACQGGYEGVVRRL--------GDVQAVREQ----------------------------------------EGRVTNTG---LMAASEGGHVGVVRYLLACLYA-------PHLPSSRSRLPPLDIDAQDARGASALHLACRRDRAEVVSLLLAAGASLE 240
The following BLAST results are available for this feature:
BLAST of NO27G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21034.11.400e-2835.66ankyrin unc44, partial [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005060NSK005060Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00590.1NO27G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|213051gene_8649Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100422g4gene9390Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00590.1NO27G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00590 ID=NO27G00590|Name=NO27G00590|organism=Nannochloropsis oceanica|type=gene|length=3985bp
ATGCCCCTCCCTGCAGgtccgtcagctcgtcctccgctttgataactacg
tccccaccaccaccagcctcgacaataccgctggggcagccatttcattt
ctcttgtcgtctgccttcattccagtaaaccaccacctacaccctccttc
tcctcgcacgtcttcccagtcctccacctccaatcacacgccactacacc
agaacaatgtcatccttattcactgcccgtatcctcgcccttacaatagC
CCCATCCCTCCTTCTTCTCATCACCGGCCCGCCATGCCTTGTCCCCCCTC
CCGAAGCCAGCATCATTCTTGCCTCATCCATAGCGAAAATCGGCGGGGAC
AACATAGgtaagtcttttcccccacaacgcagaaaatacgttttatgcaa
aagaaggagaggcaacaaaagccaggaaatgcttcgactcagagtggcca
tcaaacgaccgatctctcccttttctctcttcctccctccctccctagCA
CTGGCGGGCCTCGTCTCAGACGTCGTTTCTCGTTACCCCTCATCCCTTCA
CGCACCTGAAGACTTCACCGCATGGCCTTGGGTGCCTCCCCTTATGCACG
CGGCTAAGACAGGGAACATGGCGTTGGTGAACATCCTGCTCGAAAACGGG
GTAGATCCCATGCGAGGGACTGCTGCCCTGCCGGGGGGAGGGAGGAAGGG
ATGGCAGCAAGGGAACGAGACGCCATTATGGGTGGCATGTAGAGAGGGGC
ATGTGATTGTCGTGGAAAGATTATTAGAGGAGGTGGGACAAAGCCCTCCC
TCCGTTCCTGCATCGTCCCATTCCTCGGTGGAGAAGGAGACGGAGCAAGA
GCAGCAGCAACATCAGGGAGGAGGAGGGGAGGGGGACAGAAAGGGAGGAC
GGGGGGGACAAGGACGACGACGATACCGAGAGAGGTTAGAGATTGAGAGG
TGTGTGACAACAGAAGGTGTGACCCCCTTGATGGTCGCGAGTGAGGGAGG
GCACGTGGAAGTGGTGCGGGTGCTCTTGACAAGGTTTTACTCAAGCCCTC
CCTCCTCCGTTGGTCCCCTCCACCATTCCTCTCGGGTTTTGAATATGAAT
TTGAATTTAAACGCGAATTCAAACAAAGGCTTTACTGCCCTTCACCTTGC
GTGTCGGCAGGATCGATCGGATGTCTTGTTCCTCCTCCTGAAAGCAGGGG
CAAAGATGGACGACAGGGTAGGCAGGCGGGAGGGAGGGAGGGAGGGAGGC
AACAGGGAGGAATTTATGGCTGGATGGGGGGAAGTAGAGGAGGACAGGGG
GTTGGAAGGGAGTGCGCTGTGGGGCTATAATGGATGGGAGGTGCTGGTCG
CATCCAACGCAACAGAGAGCCTATTGTCCCTCCTCTCCGCTTCTTCCTTC
GGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCTACAACGACTTGGT
GTACGTGGCAGTGGCACATCAGCGGGTCCACATGGTGAAGCTGCTACTGG
CACTGCATAGGCAGGAGGTAGAGAAGGCGCAGCAGCAGCAGCAACAACAG
GAGGAGGAGAAGGAGGAGAAAAAGGAGGGAGGAAAGGAGGAAGGAAAGGA
GGACGAGACGCCACAGTATCACTCAGAATTCAAATGTCCCCTCGTGTTGG
CTGCCAGTCTACTCCACTCAGCCTCCTCCTTCCCCTCCTCCCCCTCCTCT
TCCCTTGTCTCCATCATGACCCTCCTACTCCAACACCCCTTCCCCCTCCT
CCACGCTCCTCACACCACCGCCACCCCCTCCCTCCCTTCCCCCCCTCCCT
CCTCCTCCACCACACTGATCCTTATGGATGGACTGCTCTTCATCACGCCG
CTTGGGCTGGAGACACGGACGCGGTTTCTCTCCTCCTCCGGGCAGgtgct
ttctcctcccctttcccctttccttcctccctctctgcctcgtcttcggg
ctcggctcaagggaaagggcaggtgctgcccgcttgtctttcctctcttc
cttcctcagcttcgaccgttcctaccccccttcctcccttcctaccttca
tctctttcccctttctccctggcttgtttcgcggggaaatcagaggttgt
gaagCTCATGGTTTTGGAGTGGGGGGTGGACCCATGGGAAGGAAGGGAGG
GAGGGAAGGAGAGAGGGATGAATGGGTGGTTGCCGGTGGAGGTGGCGACT
GAGGGAGGGAGGGAGGAGGTGGTGAAATATTTGTTGAGTCTGCCGGGGGC
GGAGGGATGGAGGGAGGGCGGGAGGGAGGGTTGGATGAAGGGGAAGAACG
ATGGAGGAAAAGAGTCTGTGTGGGAGGAGAAGAAAGAAGATGAGGAGGAG
GAGGCAGTGGAGGATCCCATAAATTTTAGATGGGACGAGAGCAAGGGAGA
GGGGGAGGGAGGGAGAGTGGGAAGGAGGGAAGGAGGAGGGTGGAAGATGG
CACTGGAGGCGATTTGGGAGGCCATTTGGGGGAAGGGGGAGGGAGGGGAG
AAGAAAGGGTTGACCCTATGGACATCAAAGAGTGTGATGGAGGATCGCTA
TTCTTTTGTGTACCTTTCTATCGGGCTTATATGTCTCTTGCTGCTTCAGG
GTTGGAAAAGAGTGGAAGGTGGGGTGGTGGCATTCGGAGGAGTGCTAGTG
TGGTTGGTATCTGATGCCTGGACTCGATGTGTTAATGTTGATGATGGGGA
TGGAAGTGGTGGTAGATGGCTTTTGAACTTTCGTTTCTGGCGGATGGATG
TTGACAAGTGGCGCTCTTGGTTAATGTGGTGGGTGTGTGGGGGGTTGGTC
GGCGTTTGGTGGGTGCTGGTGGTGGTGAAGTGGGAGGAAGGAGGAGGGGC
GGGGGTAGAGGGAAAGGAGGAGGAGGAGAAGGAGGAGGAAGTGGGAAAAG
GGGTCGATGAGGCGGAAGGAGGGAAGTTAGAGGAGGAGGAGGGGCGGGAA
GAGAAGCGGGAGGAGGAGGAGATGCAGGAGGAGGAGGAGGAGGAGGAAGA
GGAAGAGGAGAAGGAAGAGGAAGAGGAAAAGGAAGAGGAGGAGGAGGAGG
AGGAGGAACAAAATTTGGAGTGGTGGGAGGGCGACGGCGATGGAGAAAAG
CAAGACGAACGAGAAGAGGAAGACGGAGAAAAAGAGGAGGAGGAGGGAGA
AGAGAGAAAAGAGAAGGAGACGAAGGAGATGGTGGTCGGGGTAGAAGAAA
GAAAGAAACAACGGGAGGAGAATGATGTGGAAGAGGAGGTGGTGATGCGG
GCGGAGGAGATGGAGAAGTGGGAGGAGGAATTGATGCTGGAGGTGGAGAA
TGAGGAGGAGAAGGAGATGGAGAAGGAGATGGAGAAGACCGATCCTACTC
TCACTGTTTCTCCTTCTGCGGCCACTCCCGTCGTAAAGAAGGAGAAAGAC
CAGCAACAACGGCAGCAGCAACAGCAGCAACAGCAACAGCAGCAGCAGCA
GCAGCAGCAACAGCAGCAACAGTACACGATAGGTGAACAAAACGAGCACG
GGCCATCATCCATTGTACTCGAATATGGACCTACCTCTCCCTCTTTCTCA
AGCCCTCCCTCCCCCTGCCCTCCCTCTCCCTCGTCGACCTCCACCCCTAC
CTCCTCCCCTCTCTTCATTGCCTTCCCTTCGGATAGCCGCGCTCGGGAAT
GGACTGCTAAGGTAATTTTCGACCGCCCTCGCATTGTCCTGCAATCGAAG
GCCCCCGCACACTCCCTCCCTCCCTCCCTTCCTCCCTTCTCCTCCTTAAG
TCCCTCCTCGGAGGTCGTGCGGTGGGAGGGAGGGAGGAGGGTAAGGAAAA
GGGAGGGAGAGGAGGAGGCGGGAGAAGGAATTTGACCGGGCATGATGGAG
GGACACTTAATGGGAGAAGAGGAGGGCGAGAGGAAGAGGGAGAAAGGGAC
TTAGGAAGAGGTGGTAGAGTAAGTTTGGTTTTCCGTCGCAGGGAGCGAGG
GAGGGAGGGAGTGAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of NO27G00590.1

>NO27G00590.1-protein ID=NO27G00590.1-protein|Name=NO27G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1084bp
MPLPAAPSLLLLITGPPCLVPPPEASIILASSIAKIGGDNIALAGLVSDV
VSRYPSSLHAPEDFTAWPWVPPLMHAAKTGNMALVNILLENGVDPMRGTA
ALPGGGRKGWQQGNETPLWVACREGHVIVVERLLEEVGQSPPSVPASSHS
SVEKETEQEQQQHQGGGGEGDRKGGRGGQGRRRYRERLEIERCVTTEGVT
PLMVASEGGHVEVVRVLLTRFYSSPPSSVGPLHHSSRVLNMNLNLNANSN
KGFTALHLACRQDRSDVLFLLLKAGAKMDDRVGRREGGREGGNREEFMAG
WGEVEEDRGLEGSALWGYNGWEVLVASNATESLLSLLSASSFGPSLPPSL
PPSFYNDLVYVAVAHQRVHMVKLLLALHRQEVEKAQQQQQQQEEEKEEKK
EGGKEEGKEDETPQYHSEFKCPLVLAASLLHSASSFPSSPSSSLVSIMTL
LLQHPFPLLHAPHTTATPSLPSPPPSSSTTLILMDGLLFITPLGLETRTR
FLSSSGQLMVLEWGVDPWEGREGGKERGMNGWLPVEVATEGGREEVVKYL
LSLPGAEGWREGGREGWMKGKNDGGKESVWEEKKEDEEEEAVEDPINFRW
DESKGEGEGGRVGRREGGGWKMALEAIWEAIWGKGEGGEKKGLTLWTSKS
VMEDRYSFVYLSIGLICLLLLQGWKRVEGGVVAFGGVLVWLVSDAWTRCV
NVDDGDGSGGRWLLNFRFWRMDVDKWRSWLMWWVCGGLVGVWWVLVVVKW
EEGGGAGVEGKEEEEKEEEVGKGVDEAEGGKLEEEEGREEKREEEEMQEE
EEEEEEEEEKEEEEEKEEEEEEEEEQNLEWWEGDGDGEKQDEREEEDGEK
EEEEGEERKEKETKEMVVGVEERKKQREENDVEEEVVMRAEEMEKWEEEL
MLEVENEEEKEMEKEMEKTDPTLTVSPSAATPVVKKEKDQQQRQQQQQQQ
QQQQQQQQQQQQQYTIGEQNEHGPSSIVLEYGPTSPSFSSPPSPCPPSPS
STSTPTSSPLFIAFPSDSRAREWTAKVIFDRPRIVLQSKAPAHSLPPSLP
PFSSLSPSSEVVRWEGGRRVRKREGEEEAGEGI*
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Synonyms
Publications