NO27G00490, NO27G00490 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO27G00490
Unique Name	NO27G00490
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1954
Alignment location	chr27:181460..183413 -

Link to JBrowse

Properties


Property Name	Value
Description	Nli interacting factor family protein

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr27	genome	chr27:181460..183413 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036412	HAD-like_sf
IPR004274	NIF

Homology

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: EWM21051.1 (ctd small phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 369.4 bits (947), Expect = 1.400e-98
Identity = 182/243 (74.90%), Postives = 206/243 (84.77%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLGEDE 378
            Q R FSV ++RE+LTVV+DMDECLLHSRFEEDMRDERGR+LAHQLLPNGDSESFHYQHQ ++GEALGDVRHRSVDYFWLELEEGERVRVNLRP V+ FLQRLSDE++VF+FTAATETYA PVLDRLDPTGSL+ GRFYRP+C    G YLKDL RIQ G+ K  L RVVLVDNNP+SFV QP+NGI VPSFYDD  D  L  V E+ID +L+ ++DVRP L +LF L AQL  VRR+LLG +E
Sbjct:  112 QGRRFSVYRKREKLTVVLDMDECLLHSRFEEDMRDERGRELAHQLLPNGDSESFHYQHQADVGEALGDVRHRSVDYFWLELEEGERVRVNLRPGVEAFLQRLSDEYNVFVFTAATETYARPVLDRLDPTGSLLDGRFYRPACRHVHGTYLKDLRRIQAGLGKADLSRVVLVDNNPLSFVPQPENGILVPSFYDDAEDRTLEAVGEMIDRRLAPLDDVRPFLGDLFQLRAQLQLVRRRLLGAEE 354

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: XP_005854684.1 (nli interacting factor family protein [Nannochloropsis gaditana CCMP526] >EKU21677.1 nli interacting factor family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 367.9 bits (943), Expect = 4.100e-98
Identity = 186/258 (72.09%), Postives = 212/258 (82.17%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLGEDEDEKGRRVRKREEREG 393
            Q R FSV ++RE+LTVV+DMDECLLHSRFEEDMRDERGR+LAHQLLPNGDSESFHYQHQ ++GEALGDVRHRSVDYFWLELEEGERVRVNLRP V+ FLQRLSDE++VF+FTAATETYA PVLDRLDPTGSL+ GRFYRP+C    G YLKDL RIQ G+ K  L RVVLVDNNP+SFV QP+NGI VPSFYDD  D  L  V E+ID +L+ ++DVRP L +LF L AQL  VRR+LLG +E ++      RE  EG
Sbjct:  112 QGRRFSVYRKREKLTVVLDMDECLLHSRFEEDMRDERGRELAHQLLPNGDSESFHYQHQADVGEALGDVRHRSVDYFWLELEEGERVRVNLRPGVEAFLQRLSDEYNVFVFTAATETYARPVLDRLDPTGSLLDGRFYRPACRHVHGTYLKDLRRIQAGLGKADLSRVVLVDNNPLSFVPQPENGILVPSFYDDAEDRTLEAVGEMIDRRLAPLDDVRPFLGDLFQLRAQLQLVRRRLLGAEERKEAVGEAGREAGEG 369

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: XP_005855509.1 (nli interacting factor family protein [Nannochloropsis gaditana CCMP526] >EKU20848.1 nli interacting factor family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.7 bits (761), Expect = 5.200e-77
Identity = 159/258 (61.63%), Postives = 181/258 (70.16%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLGEDEDEKGRRVRKREEREG 393
            Q R FSV ++RE+LTVV+DMDECLLHSRFEEDMRDERGR+LAHQLLPNGDSESFHYQHQ ++GEALGDVRHRSVDYFWLELEEG                                 YA PVLDRLDPTGSL+ GRFYRP+C    G YLKDL RIQ G+ K  L RVVLVDNNP+SFV QP+NGI VPSFYDD  D  L  V E+ID +L+ ++DVRP L +LF L AQL  VRR+LLG +E ++      RE  EG
Sbjct:  112 QGRRFSVYRKREKLTVVLDMDECLLHSRFEEDMRDERGRELAHQLLPNGDSESFHYQHQADVGEALGDVRHRSVDYFWLELEEG-----------------------------XXXXYARPVLDRLDPTGSLLDGRFYRPACRHVHGTYLKDLRRIQAGLGKADLSRVVLVDNNPLSFVPQPENGILVPSFYDDAEDRTLEAVGEMIDRRLAPLDDVRPFLGDLFQLRAQLQLVRRRLLGAEERKEAVGEAGREAGEG 340

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: OWZ15507.1 (CTD small phosphatase [Phytophthora megakarya])

HSP 1 Score: 182.6 bits (462), Expect = 2.400e-42
Identity = 100/240 (41.67%), Postives = 142/240 (59.17%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            ++RS  V    +R+ +V+DMDECL+HS+F+ ++   +      QL    DS                         F + +++GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L+ GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  +++++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   24 KKRSAHVRSPSDRIALVLDMDECLVHSKFQNEVEYRQNEYRPEQLEEYSDS-------------------------FEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLLAGRFFRESCQQRKGMFLKDLSVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVL-TSLQDVEDVRPRLHQLFRLADLLAEHQRVILG 233

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: XP_009538580.1 (hypothetical protein PHYSODRAFT_551168 [Phytophthora sojae] >AAV63948.1 putative nuclear LIM interactor-interacting protein [Phytophthora sojae] >EGZ05719.1 hypothetical protein PHYSODRAFT_551168 [Phytophthora sojae])

HSP 1 Score: 182.2 bits (461), Expect = 3.200e-42
Identity = 99/229 (43.23%), Postives = 137/229 (59.83%), Query Frame = 0

Query:  146 ERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            ER+ +V+DMDECL+HS+F+ ++   +      QL   GDS                         F + +++GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  +++++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   39 ERIALVLDMDECLVHSKFQNEVEYRQSEYRPEQLEEYGDS-------------------------FEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLSVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVL-ASLQDVEDVRPRLHQLFRLADLLAEHQRVILG 237

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: XP_002906966.1 (CTD small phosphatase-like protein, putative [Phytophthora infestans T30-4] >XP_002909873.1 CTD small phosphatase-like protein, putative [Phytophthora infestans T30-4] >EEY59479.1 CTD small phosphatase-like protein, putative [Phytophthora infestans T30-4] >EEY66367.1 CTD small phosphatase-like protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 179.9 bits (455), Expect = 1.600e-41
Identity = 98/229 (42.79%), Postives = 136/229 (59.39%), Query Frame = 0

Query:  146 ERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            ER+ +V+DMDECL+HS+F+ ++   +      QL    DS                         F + +++GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  +++++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   39 ERIALVLDMDECLVHSKFQNEVEYRQSEYRPEQLEEYSDS-------------------------FEIVMDDGERAIVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLNVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVL-ASLQDVEDVRPRLHQLFRLADLLAEHQRVILG 237

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: XP_008895497.1 (hypothetical protein PPTG_04907 [Phytophthora parasitica INRA-310] >ETL85190.1 hypothetical protein L917_15170 [Phytophthora parasitica] >ETN19675.1 hypothetical protein PPTG_04907 [Phytophthora parasitica INRA-310] >ETP36286.1 hypothetical protein F442_15739 [Phytophthora parasitica P10297] >KUF90633.1 CTD small phosphatase protein 2 [Phytophthora nicotianae] >KUF98992.1 hypothetical protein AM588_10010766 [Phytophthora nicotianae])

HSP 1 Score: 179.5 bits (454), Expect = 2.100e-41
Identity = 101/240 (42.08%), Postives = 137/240 (57.08%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            +R    V    ER+ +V+DMDECL+HS+F  ++   +      QL    DS                         F + +E+GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  + +++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   28 KRNGAHVRSPSERIALVLDMDECLVHSKFLNEVEYRQSEYRPEQLEEYSDS-------------------------FEIVMEDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLSVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLTKVL-ASLQDVEDVRPRLHQLFRLADLLAEHQRVILG 237

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: POM71899.1 (CTD small phosphatase-like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 179.5 bits (454), Expect = 2.100e-41
Identity = 99/240 (41.25%), Postives = 139/240 (57.92%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            +R    V    +R+ +V+DMDECL+HS+F+ ++   +      QL    DS                         F + +++GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  +++++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   25 KRNGAHVRAPSDRIALVLDMDECLVHSKFQNEVEYRQSEYRPEQLEEYSDS-------------------------FEIVMDDGERAVVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLSVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVL-SSLQDVEDVRPRLHQLFRLADLLAEHQRVILG 234

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: ETI38295.1 (hypothetical protein F443_15895 [Phytophthora parasitica P1569] >ETK78533.1 hypothetical protein L915_15448 [Phytophthora parasitica] >ETL31971.1 hypothetical protein L916_15343 [Phytophthora parasitica] >ETM38354.1 hypothetical protein L914_15308 [Phytophthora parasitica] >ETP08221.1 hypothetical protein F441_15730 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 178.3 bits (451), Expect = 4.600e-41
Identity = 101/240 (42.08%), Postives = 136/240 (56.67%), Query Frame = 0

Query:  135 QRRSFSVLKRRERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            +R    V    ER+ +V+DMDECL+HS+F  ++   +      QL    DS                         F + +E+GER  VN RP +D FL+     +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  + +++   L  VEDVRP L +LF L   L + +R +LG
Sbjct:   28 KRNGAHVRSPSERIALVLDMDECLVHSKFLNEVEYRQSEYRPEQLEEYSDS-------------------------FEIVMEDGERAVVNKRPGLDRFLEEAVKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLSVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLTKVL-ASLQDVEDVRPRLHQLFRLADLLAEHQRVILG 237

[Close]

BLAST of NO27G00490 vs. NCBI_GenBank
Match: AAV63941.1 (putative nuclear LIM factor interactor-interacting protein hyphal form [Phytophthora infestans])

HSP 1 Score: 177.2 bits (448), Expect = 1.000e-40
Identity = 97/229 (42.36%), Postives = 135/229 (58.95%), Query Frame = 0

Query:  146 ERLTVVVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEALGDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATETYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLERVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVEDVRPVLRELFGLEAQLGKVRRQLLG 375
            ER+ +V+DMDECL+HS+F+ ++   +      QL    DS                         F + +++GER  VN RP +D FL+  +  +DV++FTA  E Y  P+LD LDP G+L  GRF+R SC  +KGM+LKDL  ++ G     L RV+LVDNNPVSF+ QP NGIPVPSFYDD +D  L  +++++   L   EDVRP L +LF L   L + +R +LG
Sbjct:   39 ERIALVLDMDECLVHSKFQNEVEYRQSEYRPEQLEEYSDS-------------------------FEIVMDDGERAIVNKRPGLDRFLEEAAKHYDVYVFTAGLEAYGKPILDALDPKGNLFAGRFFRESCQQRKGMFLKDLNVVRGG----DLSRVILVDNNPVSFLMQPSNGIPVPSFYDDANDRTLESLSKVL-ASLQDDEDVRPRLHQLFRLADLLAEHQRVILG 237

The following BLAST results are available for this feature:

BLAST of NO27G00490 vs. NCBI_GenBank

BLAST of NO27G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21051.1	1.400e-98	74.90	ctd small phosphatase [Nannochloropsis gaditana]	[more]
XP_005854684.1	4.100e-98	72.09	nli interacting factor family protein [Nannochloro...	[more]
XP_005855509.1	5.200e-77	61.63	nli interacting factor family protein [Nannochloro...	[more]
OWZ15507.1	2.400e-42	41.67	CTD small phosphatase [Phytophthora megakarya]	[more]
XP_009538580.1	3.200e-42	43.23	hypothetical protein PHYSODRAFT_551168 [Phytophtho...	[more]
XP_002906966.1	1.600e-41	42.79	CTD small phosphatase-like protein, putative [Phyt...	[more]
XP_008895497.1	2.100e-41	42.08	hypothetical protein PPTG_04907 [Phytophthora para...	[more]
POM71899.1	2.100e-41	41.25	CTD small phosphatase-like protein [Phytophthora p...	[more]
ETI38295.1	4.600e-41	42.08	hypothetical protein F443_15895 [Phytophthora para...	[more]
AAV63941.1	1.000e-40	42.36	putative nuclear LIM factor interactor-interacting...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL058	nonsL058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL057	nonsL057	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR063	ncniR063	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR044	ncniR044	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR093	ngnoR093	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005043	NSK005043	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO27G00490.1	NO27G00490.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609026	gene_10157	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
jgi.p\|Nanoce1779_2\|603415	gene_8632	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100221g2	gene9378	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO27G00490.1	NO27G00490.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO27G00490 ID=NO27G00490|Name=NO27G00490|organism=Nannochloropsis oceanica|type=gene|length=1954bp
CAGGCATACAAACACGGCTGCCGCTAGCCAAGACCAGCAGGGGATTTCGA
ACGGACACTACTTACAGGCACTAGCAGCAATACCACTACCAGCACTAGCA
CAAGCAGCACGACCATCATTACCGCAACAAAAATGTGTGGGCTTCTCTCG
TATTCATCGTTGGGGTCATCCTTTACCAGCCTGCAGAGTGGGTGGGGGCC
TGGGACGACAGCAGCCGCCCTCCTCTGTCGTAGCCTCCGCCGGCCAAGCA
GTAGTACCAGCAGCATCGGTACAAAGCAAATCACCAGCAGCAGCAGCAGC
ACAGCTAGTTATGGAGGATTATCACCGTTGTTGCTTTTGAAGAATGGTCG
TGCAAGCACCAGCAGTCTGAGCAGTAAAAGGTCAGCCTGTCTGAAGAGCA
GCAGCAGCAGCAACAGGAGCAGCACCAGCGGCATTGCGCTCCAAACATTA
TCAGCTACTAATACGCATCCGTCAAGCTTTGCATCTTGGCCGTCGCTGGG
TGAAGGAGGGCAAATTGGACAACAGCACCGGCACCAGCGACGAAGTTTCT
CAGTGCTGAAGAGAAGGGAGAGACTAACGGTGGTGGTGgtacgtgatcga
gggtgtaacggcgagttggctagccgttgtattctctaaattatctcttc
ttttctatgtctttatctatctcagGATATGGACGAATGCCTCCTCCATA
GCAGGTTTGAGGAAGATATGCGCGACGAGCGTGGAAGGGACTTGGCACAT
CAATTGTTGCCCAACGGCGATAGTGAAAGTTTTCATTATCAGCACCAGAA
GGAGATAGGAGAGGCCCTTGGGGATGTCCGGCATCGGAGCGTTGACTACT
TCTGGCTGGAGCTGGAGGAGGGGGAGCGTGTGCGAGgtatgtttgtttga
ccgtctcctccatacgtcatttaaatcccgttgggggcatatggaagtat
aaacctaccttattcatgtgccgattatcttcctggtggtggcattgtgc
cgtgatttttcctcagcatgtaacaaggcgcctcacgttttcccctccct
atctccctccttccctcccttcttccctccttccctctctccctggacat
gcagTGAACTTACGGCCCAAAGTGGATGAATTTTTGCAACGTCTGAGTGA
CGAACACGATGTGTTTATCTTCACGGCTGCCACGGAAACCTACGCATCCC
CCGTACTGGACCGTCTGGATCCCACCGGATCTTTAATCCGCGGGCGTTTT
TACCGGCCTTCGTGTTTATTCAAGAAGGGAATGTATTTGAAGGACTTGGG
CAGGATCCAGAAGGGAATCAAGAAGGAGACATTGGAAAGGGTGGTGCTGG
TTGACAATAATCCGGTCTCTTTCGTGGCCCAGCCCGACAATGGTATCCCT
GTGCCTAGCTTCTACGACGACGTCAGTGACATGGCCTTGCCCCTGGTGAA
CGAGTTGATTGATGAGAAATTGAGTGCTGTTGAGGACGTGAGGCCAGTGC
TACGGGAGCTGTTTGGGTTAGAGGCGCAGCTGGGGAAGGTGCGACGGCAA
CTGCTGGGAGAGGACGAGGACGAGAAGGGAAGGAGGGTGAGAAAGAGGGA
GGAGAGGGAGGGGATGCAGTGACACTCTTTCTGCTCTTGCTTTGGTTTGT
CTGATGGGAAAGAAGGGGAATAAGGGAACGCAGAATATGGATTCAATGAC
AAGAAACGGCTGGATTAAACAAAATGTTCAAAGACGGCTTTCGCGTGTAG
CAGAGCGGCCTTTTAAATTTTCAAATAGCACGCACGTGTTTCCTGCGCTC
ACACACCCATTCGATGTCATGCCTCTTCACGATGGGCGGGTAAGTGGGGG
GGTATATGCGTAAGGGAGAGAGGACCATGAGTCATCGGGTGAAAAGGAGT
CGATGAACGGATGGATCGGATCGGAAAGAAAAAAGTAAGCGAGAGAAAGG
GACG

protein sequence of NO27G00490.1

>NO27G00490.1-protein ID=NO27G00490.1-protein|Name=NO27G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MCGLLSYSSLGSSFTSLQSGWGPGTTAAALLCRSLRRPSSSTSSIGTKQI
TSSSSSTASYGGLSPLLLLKNGRASTSSLSSKRSACLKSSSSSNRSSTSG
IALQTLSATNTHPSSFASWPSLGEGGQIGQQHRHQRRSFSVLKRRERLTV
VVDMDECLLHSRFEEDMRDERGRDLAHQLLPNGDSESFHYQHQKEIGEAL
GDVRHRSVDYFWLELEEGERVRVNLRPKVDEFLQRLSDEHDVFIFTAATE
TYASPVLDRLDPTGSLIRGRFYRPSCLFKKGMYLKDLGRIQKGIKKETLE
RVVLVDNNPVSFVAQPDNGIPVPSFYDDVSDMALPLVNELIDEKLSAVED
VRPVLRELFGLEAQLGKVRRQLLGEDEDEKGRRVRKREEREGMQ*

Synonyms

Publications