NO27G00460, NO27G00460 (gene) Nannochloropsis oceanica

Overview
NameNO27G00460
Unique NameNO27G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1593
Alignment locationchr27:172690..174282 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:172690..174282 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
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BLAST of NO27G00460 vs. NCBI_GenBank
Match: EWM21045.1 (hypothetical protein Naga_100221g7 [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 1.100e-87
Identity = 220/408 (53.92%), Postives = 262/408 (64.22%), Query Frame = 0 
Query:   82 YCSFFRYGRCTRLFPS--TCAFLHEPCPQGLDCTDFRYCQKGHPRAWEDKREWAKPCRFYRAGGFC---IRLERKECMYQHVMCRDGKDCQEGRCQWGHPWEWRCKGCVKCGSDGGRLKKGEEGLTGAGVLLLSPSHEEGKYDLVLVEEENWDADGAREWGEMGGRISSLGRDKDENEDDVGAVGGNAVGREEAPVVAARELLEETAGTVQVSVTTIGACPYVDVGLFHRYRCYLLVLDKAEVSVGVYQQARKNAGLPRSWRETLDMRRFPLDRVGEEMRMKKGKRRGATREGEGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLMNDLIYSHKGRGHALAERVRQVLSEMFRAGWLDPY 485
            +CS+FR+GRCTRL P+  TC+FLHE CP G+DC D+++C+KGHPRAWEDKREW++PCR  R  G C    +  + EC YQHVMC++GKDCQ G CQWGHP  WRCKGC KCG  GG   +  +G+ GAGVLLLSPSH   ++DLVLV EE  +    REWGEMGGR  S    + ++ED           RE    VAAREL EETAGTV+V+   +  CP+VD+G+FHRYRCY+L + K E SVGV+Q+ARK  GLPR+WRET DM+RFPL RV EEM  K                                           XXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXX   + D IYSHKG+ H LA R ++VL+  FR G LD Y
Sbjct:   79 HCSYFRFGRCTRLGPAPYTCSFLHEACPHGIDCLDYQHCRKGHPRAWEDKREWSRPCRRLRLTGRCPYQAKDGKDECRYQHVMCQEGKDCQNGSCQWGHPRAWRCKGCEKCG--GG---QEGQGVVGAGVLLLSPSHCPDEFDLVLVAEEGRNGVSGREWGEMGGR--SGPHPEPDSED-----------REAIAAVAARELEEETAGTVRVAPVRLVTCPFVDIGIFHRYRCYVLAVAKEEASVGVFQRARKKPGLPRAWRETCDMKRFPLQRVVEEMGAK-----------------------------------------GRXXXXXXXXXXXXXXXXXXXKLKKMDEGXXXXXXXXXXXXXXXXXXXXXLGDYIYSHKGKAHLLASRAKEVLTAAFRQGMLDSY 427
The following BLAST results are available for this feature:
BLAST of NO27G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21045.11.100e-8753.92hypothetical protein Naga_100221g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL058nonsL058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL057nonsL057Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR044ncniR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005037NSK005037Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00460.1NO27G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660796gene_10152Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|633049gene_8628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100221g7gene9374Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00460.1NO27G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00460 ID=NO27G00460|Name=NO27G00460|organism=Nannochloropsis oceanica|type=gene|length=1593bp
ATGTCAAGCTTGGCCATCACCACTGCCAGTAGCAGCAACGCAAGCAGCAG
CAACAGAAGCAACAACAACAACAACAACGACAACAACAACAACAATCGCA
CCACCAATTGCAGGGGCGATTATGAGAGCGGGATCGAGGGCCGAGACGAG
GTATCCTCCTCATCCGTTCCTGATCCTCTACCACCACCATTACTATCATC
ATCATCTTCACCACCAAACCCGCCAGCCGCGCACAAGCGGCGTTATTGTT
CCTTTTTTCGGTATGGTCGCTGCACTCGCCTGTTTCCCTCCACCTGTGCC
TTTCTCCACGAGCCCTGCCCTCAAGGCCTTGACTGCACCGATTTTAGATA
TTGCCAGAAAGGTCACCCACGAGCCTGGGAAGACAAGAGGGAATGGGCCA
AGCCCTGCCGTTTCTATCGGGCCGGTGGGTTCTGCATACGATTGGAACGC
AAAGAATGTATGTACCAACATGTGATGTGCAGGGACGGGAAGGACTGTCA
GGAGGGAAGGTGTCAGTGGGGGCATCCATGGGAATGGCGCTGTAAGGGTT
GTGTCAAATGTGGGAGTGATGGAGGAAGATTGAAAAAAGGGGAAGAGGGG
TTGACAGGGGCAGGGGTTTTGCTGTTGTCGCCTTCTCATGAGGAAGGGAA
GTATGACCTTGTGCTCGTTGAAGAGGAAAATTGGGATGCGGACGGGGCAA
GGGAGTGGGGAGAGATGGGCGGTCGGATCAGCAGTCTCGGTAGAGACAAA
GACGAAAACGAGGACGATGTTGGGGCGGTTGGAGGGAATGCCGTGGGGAG
GGAGGAAGCACCTGTTGTGGCAGCACGCGAACTCTTGGAGGAGACGGCAG
GCACCGTGCAAGTCAGTGTCACTACAATCGGTGCTTGTCCCTACGTGGAT
GTCGGTTTATTCCATCGGTATCGCTGCTATTTGCTCGTCTTGGATAAGGC
GGAGGTGAGTGTCGGAGTGTACCAACAAGCACGAAAGAATGCGGGGTTGC
CTCGCAGCTGGAGGGAGACGTTGGACATGAGGCGATTTCCATTGGACAGG
GTTGGGGAGGAGATGAGGATGAAGAAGGGGAAGAGGAGGGGGGCCACCAG
GGAGGGCGAGGGTTACAAATCGGGAGCAGGGCAAAAGAAGAGGAAGAGAG
ATGAGCGGGGCGGGGGCGAGGTGGACCAGGAGGGGGAGGTGGCGGGGGAT
GAGGAGGAGGAGGAGGAGGAGGGAATGGAAGGAGGAGGGGAAGGACATGG
AAATAAAAAGGTGAAGGACAAGGGCAAGGGCGAGAAAATGGATGTGGAGG
AGAAGGAGGAGGAGGAGGTTGGGGGGGGGGGGGGGCATTCGGTGTTGATG
AACGATCTCATCTACAGTCACAAAGGCAGGGGTCATGCGTTGGCAGAGCG
GGTGCGGCAAGTGCTGAGTGAAATGTTTCGTGCAGGATGGCTAGACCCTT
ACTTCTCTTCATCTGCATCTCCACCTGCAGGCGCTGCTGACGCTCCCTCG
CCGCCAACATCGATGGTGGCAAAACGAGGGTGGGGAGGAAGACGTGGGGA
AGTGAGGGGGAGAAGAGGAGGAGGACGAGGAGGAGGAAATTGA
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protein sequence of NO27G00460.1

>NO27G00460.1-protein ID=NO27G00460.1-protein|Name=NO27G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MSSLAITTASSSNASSSNRSNNNNNNDNNNNNRTTNCRGDYESGIEGRDE
VSSSSVPDPLPPPLLSSSSSPPNPPAAHKRRYCSFFRYGRCTRLFPSTCA
FLHEPCPQGLDCTDFRYCQKGHPRAWEDKREWAKPCRFYRAGGFCIRLER
KECMYQHVMCRDGKDCQEGRCQWGHPWEWRCKGCVKCGSDGGRLKKGEEG
LTGAGVLLLSPSHEEGKYDLVLVEEENWDADGAREWGEMGGRISSLGRDK
DENEDDVGAVGGNAVGREEAPVVAARELLEETAGTVQVSVTTIGACPYVD
VGLFHRYRCYLLVLDKAEVSVGVYQQARKNAGLPRSWRETLDMRRFPLDR
VGEEMRMKKGKRRGATREGEGYKSGAGQKKRKRDERGGGEVDQEGEVAGD
EEEEEEEGMEGGGEGHGNKKVKDKGKGEKMDVEEKEEEEVGGGGGHSVLM
NDLIYSHKGRGHALAERVRQVLSEMFRAGWLDPYFSSSASPPAGAADAPS
PPTSMVAKRGWGGRRGEVRGRRGGGRGGGN*
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Synonyms
Publications