NO27G00310, NO27G00310 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_002780979.1 (RING-H2 finger protein ATL5O, putative [Perkinsus marinus ATCC 50983] >EER12774.1 RING-H2 finger protein ATL5O, putative [Perkinsus marinus ATCC 50983]) HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33 Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = 0 Query: 154 PPPASTRVLRRLPDVTVTEADVQSD-KNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVVGE 299 PPPAS+ ++ LP V VT D+ D KN + C++CLEP VG+KA KLPC H+F C++ WL ++CTCPVCR+EL T D ++E RK RMK R++R R +L+ S L++L IG+S+ GCLEK D++ RLE S ++++ E Sbjct: 78 PPPASSTAIQSLPKVVVTPEDIGEDAKNNQECSICLEPQHVGNKATKLPCGHIFCSGCIVPWLRKNCTCPVCRYELPTNDAQFEAGRKDRMKQRKMRFRKRDLQNMSVRGLRQLMNEIGVSSEGCLEKSDMLDRLEASSRVELIPE 223
BLAST of NO27G00310 vs. NCBI_GenBank
Match: CBN75113.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 146.0 bits (367), Expect = 3.100e-31 Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 0 Query: 162 LRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVV 297 L+ +P+V + D+ + N+ C+VCLE H +G +KLPC H+FHR CV WLE HCTCPVCRFELETED YE ER+ RM+ RR R R EL+G S +++ L ++ GCLEK D++R L +SG ++VV Sbjct: 33 LKNIPEVKIAALDLAEETNR-SCSVCLEDHELGETVVKLPCAHIFHRECVWEWLELHCTCPVCRFELETEDAGYERERRVRMRGRRPRYRRQELEGLSIPQVRNLARGQNVNIAGCLEKADIVRCLLDSGTIEVV 166
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_002184335.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44084.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 124.0 bits (310), Expect = 1.200e-24 Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 0 Query: 153 GPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVV 297 GPP AS +VL LP + +T D+ N+E C VC + H + K L+LPC H+FH C+ WL+ HCTCPVCR+EL T+D +YE R +RM++R+ R EL + ELK L ++K DLI L S +DVV Sbjct: 77 GPPAASAQVLHHLPQIRITRQDLVEPTNRE-CCVCFDLHRLNDKVLRLPCAHVFHPQCITKWLQSHCTCPVCRYELPTDDPDYERGRIERMRNRKPRFARHELDRMTVSELKALLAKSKNCRQRPVDKHDLISLLISSNAIDVV 219
BLAST of NO27G00310 vs. NCBI_GenBank
Match: OLQ08683.1 (Leucine-zipper-like transcriptional regulator 1 [Symbiodinium microadriaticum]) HSP 1 Score: 123.6 bits (309), Expect = 1.600e-24 Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 0 Query: 155 PPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVVGE 299 PPAS RV LP V VT+ D+ N + C+VCLE + G +A ++ C HLF C+ WL + TCPVCR+EL T+ ++E+ R+ RM R +RLR EL+ EL+RL +++G+S GCLE+ DL+R LE + ++V E Sbjct: 865 PPASERVRDALPRVVVTKEDLLDATNSK-CSVCLEDYRPGVRATRMLCGHLFCTGCIREWLREANTCPVCRYELATDCEDFESGRRTRMSGRIVRLRAAELRMLRISELRRLMDALGVSGEGCLERADLVRHLEGAPDVEVAPE 1007
BLAST of NO27G00310 vs. NCBI_GenBank
Match: PRP89511.1 (hypothetical protein PROFUN_00775 [Planoprotostelium fungivorum]) HSP 1 Score: 105.5 bits (262), Expect = 4.600e-19 Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRI 249 L + H+ + GPPP S VL RLP VT ++ E C VC E + L+LPC+H FH+ CV WLEQHCTCP CR+EL +D EYE ERKKRM R I Sbjct: 168 LMRQHQPQ-GPPPTSKNVLDRLPIVT-----AEAKHTCETCLVCQENFVEEESVLELPCKHNFHKDCVTTWLEQHCTCPTCRYELPVDDKEYEVERKKRMAGRGI 266
BLAST of NO27G00310 vs. NCBI_GenBank
Match: OWM86410.1 (hypothetical protein CDL15_Pgr021496 [Punica granatum]) HSP 1 Score: 101.3 bits (251), Expect = 8.600e-18 Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKR 243 L +N R GPPPAS +R LP + +T+ + S C VC + GS AL++PC+H++HR C++ WL H +CPVCR EL T+D +YE R+ R Sbjct: 239 LAENDPNRYGPPPASESAVRALPSIKITQELLNSSSGLSQCIVCQDEFDQGSVALEMPCKHVYHRDCLLKWLSSHNSCPVCRLELPTDDADYEITRRAR 337
BLAST of NO27G00310 vs. NCBI_GenBank
Match: PKI39759.1 (hypothetical protein CRG98_039804 [Punica granatum]) HSP 1 Score: 101.3 bits (251), Expect = 8.600e-18 Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKR 243 L +N R GPPPAS +R LP + +T+ + S C VC + GS AL++PC+H++HR C++ WL H +CPVCR EL T+D +YE R+ R Sbjct: 184 LAENDPNRYGPPPASESAVRALPSIKITQELLNSSSGLSQCIVCQDEFDQGSVALEMPCKHVYHRDCLLKWLSSHNSCPVCRLELPTDDADYEITRRAR 282
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_012829254.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Erythranthe guttata] >EYU17802.1 hypothetical protein MIMGU_mgv1a008418mg [Erythranthe guttata]) HSP 1 Score: 99.8 bits (247), Expect = 2.500e-17 Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETER 240 L +N R G PPAS V+ LPD+T+T+ + SD ++ C VC + + A ++PC+HL+H+ C++ WLE H +CPVCR+EL T+D EYE R Sbjct: 190 LAENDPNRYGTPPASKSVVEGLPDITITQEMLTSDSSQ--CAVCKDSFELNEAAKQIPCKHLYHKDCIVPWLELHNSCPVCRYELPTDDPEYENRR 283
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_022141521.1 (E3 ubiquitin-protein ligase RING1 [Momordica charantia] >XP_022141522.1 E3 ubiquitin-protein ligase RING1 [Momordica charantia]) HSP 1 Score: 99.8 bits (247), Expect = 2.500e-17 Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIR 250 L +N R G PPAS + +LP VTVTE + S+ N+ C VC++ +G K ++PC+H+FH C++ WLE H +CPVCRFEL T+D +YE R + RR++ Sbjct: 177 LAENDPNRYGTPPASKSAIEKLPAVTVTEDLLNSEMNQ--CAVCIDEFQIGIKVKQMPCKHVFHDDCLLPWLELHNSCPVCRFELPTDDSDYE----NRTRGRRVQ 276
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_006374275.1 (E3 ubiquitin-protein ligase RING1 [Populus trichocarpa] >ABK95038.1 unknown [Populus trichocarpa] >PNT00097.1 hypothetical protein POPTR_015G028400v3 [Populus trichocarpa]) HSP 1 Score: 99.4 bits (246), Expect = 3.300e-17 Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0 Query: 144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETER 240 L +N R G PPA+ + LPDV VTE +QSD ++ C VC + +G A ++PC+H++H+ C+M WLE H +CPVCR+EL T+D +YE + Sbjct: 162 LAENDPNRYGTPPAAKSAVENLPDVKVTEELMQSDSSQ--CAVCKDSFELGEVAKQIPCKHIYHKDCIMPWLELHNSCPVCRYELPTDDQDYEQRK 255 The following BLAST results are available for this feature:
BLAST of NO27G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00310 ID=NO27G00310|Name=NO27G00310|organism=Nannochloropsis oceanica|type=gene|length=2852bpback to top protein sequence of NO27G00310.1 >NO27G00310.1-protein ID=NO27G00310.1-protein|Name=NO27G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bpback to top Synonyms
Publications
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