NO27G00310, NO27G00310 (gene) Nannochloropsis oceanica

Overview
NameNO27G00310
Unique NameNO27G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2852
Alignment locationchr27:110420..113271 -

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Properties
Property NameValue
DescriptionRING-H2 finger protein ATL5O, putative
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:110420..113271 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_002780979.1 (RING-H2 finger protein ATL5O, putative [Perkinsus marinus ATCC 50983] >EER12774.1 RING-H2 finger protein ATL5O, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 154.1 bits (388), Expect = 1.100e-33
Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = 0
Query:  154 PPPASTRVLRRLPDVTVTEADVQSD-KNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVVGE 299
            PPPAS+  ++ LP V VT  D+  D KN + C++CLEP  VG+KA KLPC H+F   C++ WL ++CTCPVCR+EL T D ++E  RK RMK R++R R  +L+  S   L++L   IG+S+ GCLEK D++ RLE S  ++++ E
Sbjct:   78 PPPASSTAIQSLPKVVVTPEDIGEDAKNNQECSICLEPQHVGNKATKLPCGHIFCSGCIVPWLRKNCTCPVCRYELPTNDAQFEAGRKDRMKQRKMRFRKRDLQNMSVRGLRQLMNEIGVSSEGCLEKSDMLDRLEASSRVELIPE 223          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: CBN75113.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 146.0 bits (367), Expect = 3.100e-31
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 0
Query:  162 LRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVV 297
            L+ +P+V +   D+  + N+  C+VCLE H +G   +KLPC H+FHR CV  WLE HCTCPVCRFELETED  YE ER+ RM+ RR R R  EL+G S  +++ L     ++  GCLEK D++R L +SG ++VV
Sbjct:   33 LKNIPEVKIAALDLAEETNR-SCSVCLEDHELGETVVKLPCAHIFHRECVWEWLELHCTCPVCRFELETEDAGYERERRVRMRGRRPRYRRQELEGLSIPQVRNLARGQNVNIAGCLEKADIVRCLLDSGTIEVV 166          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_002184335.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44084.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 124.0 bits (310), Expect = 1.200e-24
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 0
Query:  153 GPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVV 297
            GPP AS +VL  LP + +T  D+    N+E C VC + H +  K L+LPC H+FH  C+  WL+ HCTCPVCR+EL T+D +YE  R +RM++R+ R    EL   +  ELK L           ++K DLI  L  S  +DVV
Sbjct:   77 GPPAASAQVLHHLPQIRITRQDLVEPTNRE-CCVCFDLHRLNDKVLRLPCAHVFHPQCITKWLQSHCTCPVCRYELPTDDPDYERGRIERMRNRKPRFARHELDRMTVSELKALLAKSKNCRQRPVDKHDLISLLISSNAIDVV 219          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: OLQ08683.1 (Leucine-zipper-like transcriptional regulator 1 [Symbiodinium microadriaticum])

HSP 1 Score: 123.6 bits (309), Expect = 1.600e-24
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 0
Query:  155 PPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRLRPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVVGE 299
            PPAS RV   LP V VT+ D+    N + C+VCLE +  G +A ++ C HLF   C+  WL +  TCPVCR+EL T+  ++E+ R+ RM  R +RLR  EL+     EL+RL +++G+S  GCLE+ DL+R LE +  ++V  E
Sbjct:  865 PPASERVRDALPRVVVTKEDLLDATNSK-CSVCLEDYRPGVRATRMLCGHLFCTGCIREWLREANTCPVCRYELATDCEDFESGRRTRMSGRIVRLRAAELRMLRISELRRLMDALGVSGEGCLERADLVRHLEGAPDVEVAPE 1007          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: PRP89511.1 (hypothetical protein PROFUN_00775 [Planoprotostelium fungivorum])

HSP 1 Score: 105.5 bits (262), Expect = 4.600e-19
Identity = 53/105 (50.48%), Postives = 64/105 (60.95%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRI 249
            L + H+ + GPPP S  VL RLP VT      ++    E C VC E  +     L+LPC+H FH+ CV  WLEQHCTCP CR+EL  +D EYE ERKKRM  R I
Sbjct:  168 LMRQHQPQ-GPPPTSKNVLDRLPIVT-----AEAKHTCETCLVCQENFVEEESVLELPCKHNFHKDCVTTWLEQHCTCPTCRYELPVDDKEYEVERKKRMAGRGI 266          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: OWM86410.1 (hypothetical protein CDL15_Pgr021496 [Punica granatum])

HSP 1 Score: 101.3 bits (251), Expect = 8.600e-18
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKR 243
            L +N   R GPPPAS   +R LP + +T+  + S      C VC +    GS AL++PC+H++HR C++ WL  H +CPVCR EL T+D +YE  R+ R
Sbjct:  239 LAENDPNRYGPPPASESAVRALPSIKITQELLNSSSGLSQCIVCQDEFDQGSVALEMPCKHVYHRDCLLKWLSSHNSCPVCRLELPTDDADYEITRRAR 337          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: PKI39759.1 (hypothetical protein CRG98_039804 [Punica granatum])

HSP 1 Score: 101.3 bits (251), Expect = 8.600e-18
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKR 243
            L +N   R GPPPAS   +R LP + +T+  + S      C VC +    GS AL++PC+H++HR C++ WL  H +CPVCR EL T+D +YE  R+ R
Sbjct:  184 LAENDPNRYGPPPASESAVRALPSIKITQELLNSSSGLSQCIVCQDEFDQGSVALEMPCKHVYHRDCLLKWLSSHNSCPVCRLELPTDDADYEITRRAR 282          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_012829254.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Erythranthe guttata] >EYU17802.1 hypothetical protein MIMGU_mgv1a008418mg [Erythranthe guttata])

HSP 1 Score: 99.8 bits (247), Expect = 2.500e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETER 240
            L +N   R G PPAS  V+  LPD+T+T+  + SD ++  C VC +   +   A ++PC+HL+H+ C++ WLE H +CPVCR+EL T+D EYE  R
Sbjct:  190 LAENDPNRYGTPPASKSVVEGLPDITITQEMLTSDSSQ--CAVCKDSFELNEAAKQIPCKHLYHKDCIVPWLELHNSCPVCRYELPTDDPEYENRR 283          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_022141521.1 (E3 ubiquitin-protein ligase RING1 [Momordica charantia] >XP_022141522.1 E3 ubiquitin-protein ligase RING1 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 2.500e-17
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIR 250
            L +N   R G PPAS   + +LP VTVTE  + S+ N+  C VC++   +G K  ++PC+H+FH  C++ WLE H +CPVCRFEL T+D +YE     R + RR++
Sbjct:  177 LAENDPNRYGTPPASKSAIEKLPAVTVTEDLLNSEMNQ--CAVCIDEFQIGIKVKQMPCKHVFHDDCLLPWLELHNSCPVCRFELPTDDSDYE----NRTRGRRVQ 276          
BLAST of NO27G00310 vs. NCBI_GenBank
Match: XP_006374275.1 (E3 ubiquitin-protein ligase RING1 [Populus trichocarpa] >ABK95038.1 unknown [Populus trichocarpa] >PNT00097.1 hypothetical protein POPTR_015G028400v3 [Populus trichocarpa])

HSP 1 Score: 99.4 bits (246), Expect = 3.300e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0
Query:  144 LRQNHERRVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKLPCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETER 240
            L +N   R G PPA+   +  LPDV VTE  +QSD ++  C VC +   +G  A ++PC+H++H+ C+M WLE H +CPVCR+EL T+D +YE  +
Sbjct:  162 LAENDPNRYGTPPAAKSAVENLPDVKVTEELMQSDSSQ--CAVCKDSFELGEVAKQIPCKHIYHKDCIMPWLELHNSCPVCRYELPTDDQDYEQRK 255          
The following BLAST results are available for this feature:
BLAST of NO27G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002780979.11.100e-3347.95RING-H2 finger protein ATL5O, putative [Perkinsus ... [more]
CBN75113.13.100e-3149.63conserved unknown protein [Ectocarpus siliculosus][more]
XP_002184335.11.200e-2443.06predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OLQ08683.11.600e-2443.75Leucine-zipper-like transcriptional regulator 1 [S... [more]
PRP89511.14.600e-1950.48hypothetical protein PROFUN_00775 [Planoprotosteli... [more]
OWM86410.18.600e-1843.43hypothetical protein CDL15_Pgr021496 [Punica grana... [more]
PKI39759.18.600e-1843.43hypothetical protein CRG98_039804 [Punica granatum... [more]
XP_012829254.12.500e-1744.79PREDICTED: E3 ubiquitin-protein ligase RING1-like ... [more]
XP_022141521.12.500e-1744.34E3 ubiquitin-protein ligase RING1 [Momordica chara... [more]
XP_006374275.13.300e-1744.79E3 ubiquitin-protein ligase RING1 [Populus trichoc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR093ngnoR093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00310.1NO27G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00310.1NO27G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00310 ID=NO27G00310|Name=NO27G00310|organism=Nannochloropsis oceanica|type=gene|length=2852bp
ACAGAGACAAATACGCAGTATAAGCTCTCGACCCAGGCCATCATCCACAT
CTTGTGCTACTCTTCCTGCTACTGCTGCTACTGCTGCTACTGCTGCTACT
GCTGCTGCTGCTGAAGTGCTTACCTACAGAGCTTGCCGGTCCGCAGTAGC
ACTATTTCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGTTGCTGCTGT
TGCTGCAACTGCTTGTGCTTTTGCTGTGAGTGCGAACAACGCAAGGCAAA
GGTAGGGAAGGACATCCAGAGCAAGCAATGGAAGAATTGTTCAATGGTAT
TTTTGGAGGGGGAAGAAGAGGAGAAGGCAGAGGTGATGGCAGAGGACACG
GAGAAAGGGGAAGAGGTCGGGGAGGATACGGGAACAACGGAGAAAGAAGA
GAGGGAGGGGCTTCAGGAGGGGAACAGGGGCCTTCGAGAGGACGAGAAGG
AGCAGCAGGTGTAAGGGGAGGGGGAGGACGAGGGGTAGCGGGGGCAGCGG
GGGCAGTAGGAGCAGGAGCAGGAGCAGGAGGATTTGGAGGGTATTTCCCT
TTCGCTGGACTGAATGGTGGAGGCGATCCTTCACCGAACATGTCTCAATT
CGTGGCAAATATGATGGCTATGCATGCCGGGATGCACATGTCGCAGCATG
GCATGCCGACCCAGCAGTACGACCAGGATGgtatgttccacctctccctc
cctctctttctcctctctccctccctccctccctccctccctcttacccc
tacctccctccctcttacctctcccccctcgttgtgtgtgagataacgtg
atggccacgctagagggctaaaccgtgagcgtagcttgggcctccctctc
acccttcctccttccctccctccctacctccaatcctcagGCTGGGAGCT
ACCCCCTCAGGAGTGGTTGCGACAAAACCACGAGCGTCGCGTGGGTCCTC
CCCCGGCATCAACAAGGGTGTTACGGCGGCTGCCTGgtgagggaaggagg
gagagaggcaggggaggagttggatttcgctgacaggatattggagagcg
aaaaaataaggaagctatcactttctctccaaattccaagcattgacaca
tatccctcgccccctcgccccgtccctcactccctccctccctccctctc
tccctccctccctccctccctcccactaccctttcctcagACGTGACCGT
GACCGAGGCCGACGTTCAAAGTGACAAGAATAAGGAGGGCTGTACTGTAT
GCCTCGAGCCCCATATCGTGGGCAGCAAGGCACTCAAGCTTCCTTGCCAA
CATCTTTTCCATAGgtacattcctcccttccctccctcccttcctccctt
cctccatccctcccctccttcctgcctaattccctgcttcttctcgtcat
tgtgactcatctattgaggccgttcgagcggctttcatatatcgctgtat
cccaccttttcttttcaacactctttctcttccgccctcccacccatcca
ccctccctccctcccttcctccctctttctctccctctctctctcccgtc
ctccctcccttccatagGTCCTGCGTGATGGGCTGGCTGGAGCAGCACTG
CACGTGCCCTGTGTGTCGGTTTGAGCTCGAGACAGAAGACGTCGAGTACG
AAACGGAGAGGAAGAAGAGGATGAAGAGCAGGAGAATTCGTTTGAGgtga
ggagggtgggagggagggaaagacgaatggacggaaagaacgacagcaaa
aggggaaaggaaggaatcatctcactcctcgttttctcgcttcctcctcc
ttctctcgcccttcctccctccttattcctgtcagACCTGGTGAGCTGAA
GGGTAAGTCTACGATAGAGCTGAAACGCCTATGTGAGTCCATCGGTATAT
CTACCCATGGCTGCCTGGAGAAGGGGGATCTAATCCGTCGGTTGGAAGAA
TCGGGAGTCATGGACGTGGTCGGTGAGGAGGAAGGGAAGGAAGGCGGGAA
GGAGGGCGGGAGGGAGGGAGGGGAGGAGAGCGTTGATAATCGCGGTGGTG
GTAGTACCAACAGCGTGCAGGGCGGCATTGGAACCAGCAGTACCGCTTTT
TCTTCCTCCCCTGCCCCCCGGCCCTCCTCCTCTTCTTCGATGTCTTCCTC
CTCCGCTCCCTCCACCTCCGCACCCTTCTCCTCTTCTACCTCCACTGCCC
CTCAACCCCCATCCCAAGCTTTTCCCGCCTCCTCCTCCACCTCGTCGTCC
TCTTTCTCTACCTCCTCCTCTTCCTCCTCATCCTCTTCTTCCTCCTTCTC
CTTCTCATCCTCCTCCTCCTCCTCGTCCCCCCTCCCCCCCCCCTCTTCCT
CCTCCCCCCCTTCGTCCACTTCCTCCTCCTCCTTCCCCCCACTCGAAAGG
CTCTCCGTTTCCGAGCTTCGACGACTTATGGCTCAACTCTCAGTCTCCTC
CTTCGGGTGCTTGGAAAAAGGAGACATGCTCAGCGCCCTCCGAGAATCAG
GAAAGCTTCCTCCAGGCTACTAACGCACATATACACACACAAGATTTCTC
CCTCCCCTTCCATTTTCGTCCCCCCATCCCGAGTGAGTGGATAAAAGGAG
CAGGCACTCGTACATTAAGCATGTAAATTAAAAGGCGCCAAGTCGTGCAT
TCGACGCACACATGTATGACACGCCACAGCACTAGAGATCTGAGACATAC
ATATAGATAGAGAGATCTGGGATATACACATTTATGGAGACTTAAGTAGT
ACTAAAATCCAAACACCAAAAGAAGTATTAACACTAAAATAGCATATTGC
GCAGAGTATAGGAAAAAGGTGCAGGCTCCTCCACCCTCACCCAAGATGCC
CT
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protein sequence of NO27G00310.1

>NO27G00310.1-protein ID=NO27G00310.1-protein|Name=NO27G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MEELFNGIFGGGRRGEGRGDGRGHGERGRGRGGYGNNGERREGGASGGEQ
GPSRGREGAAGVRGGGGRGVAGAAGAVGAGAGAGGFGGYFPFAGLNGGGD
PSPNMSQFVANMMAMHAGMHMSQHGMPTQQYDQDGWELPPQEWLRQNHER
RVGPPPASTRVLRRLPDVTVTEADVQSDKNKEGCTVCLEPHIVGSKALKL
PCQHLFHRSCVMGWLEQHCTCPVCRFELETEDVEYETERKKRMKSRRIRL
RPGELKGKSTIELKRLCESIGISTHGCLEKGDLIRRLEESGVMDVVGEEE
GKEGGKEGGREGGEESVDNRGGGSTNSVQGGIGTSSTAFSSSPAPRPSSS
SSMSSSSAPSTSAPFSSSTSTAPQPPSQAFPASSSTSSSSFSTSSSSSSS
SSSSFSFSSSSSSSSPLPPPSSSSPPSSTSSSSFPPLERLSVSELRRLMA
QLSVSSFGCLEKGDMLSALRESGKLPPGY*
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Synonyms
Publications