NO27G00130, NO27G00130 (gene) Nannochloropsis oceanica

Overview
NameNO27G00130
Unique NameNO27G00130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1515
Alignment locationchr27:41823..43337 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:41823..43337 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
IPR013096Cupin_2
Homology
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_007221390.1 (cupin domain-containing protein [Candidatus Jettenia caeni] >GAB62277.1 conserved hypothetical protein [Candidatus Jettenia caeni])

HSP 1 Score: 93.6 bits (231), Expect = 7.100e-16
Identity = 46/117 (39.32%), Postives = 73/117 (62.39%), Query Frame = 0
Query:   70 QIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGI 187
            +I+ + DLP + V+H P+     I+K++LL  ++IP++TGFS+A + PGQ    HTH   +E+F+ E GKG   +DD    V +G  + V P + HSI+N+A      D V++YFG+
Sbjct:    2 KIVSLSDLPEEGVSHNPE-----IKKKVLLKKDEIPNVTGFSQARITPGQIAGSHTHDDRYEIFFFEEGKGIVRIDDKEYPVEKGVCIAVEPGEIHSIINTA----SSDLVLIYFGV 109          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: CBN79041.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.9 bits (224), Expect = 4.600e-15
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 0
Query:   67 PKGQIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIA 188
            P+G ++ + +L    VNH     G   +KQ ++   Q+P LTGF+RAV  PG  VE H H SM EVF+   GKGT  +D     +  G  +HV   Q HS++N        D V+ YFGIA
Sbjct:   54 PRGGMVRLSELKSIPVNH----DGSGAKKQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQLTPGTCVHVAAGQKHSLINKGDV----DMVLFYFGIA 166          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: PIU02211.1 (cupin domain-containing protein [Candidatus Shapirobacteria bacterium CG09_land_8_20_14_0_10_49_15] >PJE70119.1 cupin domain-containing protein [Candidatus Shapirobacteria bacterium CG10_big_fil_rev_8_21_14_0_10_48_15])

HSP 1 Score: 90.9 bits (224), Expect = 4.600e-15
Identity = 41/120 (34.17%), Postives = 70/120 (58.33%), Query Frame = 0
Query:   70 QIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAAD 190
            +++ +  +P + V H P+     I+KQ+L+   +IP LTGFS+AV KPGQ  E H H +M+EV+++  G+ T  +        +   + + P +PH  VN++     +DF+ +YFG+A D
Sbjct:    2 KLLHLAQIPAEGVAHQPE-----IKKQVLIKNGEIPQLTGFSQAVFKPGQACEEHRHPTMYEVYFLLEGEATLFISGREVKAAKNDCVVIEPGEPHRAVNNS----RQDFIWIYFGVATD 112          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_099531741.1 (cupin domain-containing protein [Limnothrix sp. PR1529] >OCQ89174.1 cupin [Limnothrix sp. P13C2] >PIB15241.1 cupin [Limnothrix sp. PR1529])

HSP 1 Score: 87.8 bits (216), Expect = 3.900e-14
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0
Query:   74 VGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAA 189
            + ++P + V+H P      I KQ+LL    +P LT FSRA   PGQ    H H+ MHEVF++E+G+GT ++D     +  G  + + P + H I N+ P    E+ V+ YFG+ A
Sbjct:    6 LSEVPIERVSHNP-----AIAKQVLLRQGDLPHLTNFSRACFAPGQVSPGHAHSDMHEVFFIEAGQGTMIVDGQRFDLVPGVCLAIAPHEVHEIANTGP----EELVITYFGLRA 111          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_085436246.1 (cupin domain-containing protein [unicellular cyanobacterium SU2])

HSP 1 Score: 86.7 bits (213), Expect = 8.700e-14
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 0
Query:   77 LPFKSVNHLP---DAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAAD 190
            + F S++ LP       + IQK+++L+   IP LT FS+AV  PGQ V  H H +M+EVF+VESG G  L++D+   +  G  + V P++ H ++N+       + V+ YFGIA++
Sbjct:    1 MKFSSLSQLPIQVSNHNQAIQKKVMLTPGNIPHLTNFSQAVFTPGQKVIPHYHETMYEVFFVESGSGIILIEDVEYPLHPGNCITVEPKEKHELINTG----NTNLVLTYFGIASE 112          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: OKY71192.1 (cupin [Limnothrix sp. CACIAM 69d])

HSP 1 Score: 85.1 bits (209), Expect = 2.500e-13
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0
Query:   74 VGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAA 189
            + ++P + V+H P      I KQ+LL    +P LT FS+A   PGQ    H H  MHEVF++E+G+GT ++D     +  G  + + P + H I N+ P    E+ V+ YFG+ A
Sbjct:    6 LSEVPIERVSHNP-----AIAKQVLLRQGDLPHLTNFSQARFAPGQVSPGHAHPDMHEVFFIEAGQGTMIIDGQRFDLVPGVCLAIAPHEVHEIANTGP----EELVITYFGLRA 111          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_106256713.1 (cupin domain-containing protein [Leptolyngbya frigida] >PSB28621.1 cupin domain-containing protein [Leptolyngbya frigida ULC18])

HSP 1 Score: 82.4 bits (202), Expect = 1.600e-12
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 0
Query:   70 QIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAAD 190
            ++  +  LP ++V+H P      I+K+++LS  ++P LT FS+A   PGQ    H+H++M EVF+VESG+GT  ++D P ++  G  + V   + H I N+       D V+ YFG+  +
Sbjct:    2 KVTSLSTLPEQAVSHNP-----AIKKKVMLSLGELPHLTNFSQARFAPGQIANAHSHSNMCEVFFVESGEGTIWINDAPYSLQSGTCVAVDVGEKHEICNTG----STDLVLTYFGLRVE 112          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_016866216.1 (cupin domain-containing protein [Fischerella muscicola] >PLZ87122.1 cupin domain-containing protein [Fischerella muscicola CCMEE 5323])

HSP 1 Score: 82.0 bits (201), Expect = 2.100e-12
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = 0
Query:   70 QIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAA 189
            +I+ + ++P + V+H P+     I+KQ++L   ++P LT FS+A   PGQT   H H  M EVF+VE+G G   +++   ++  G  + V P + H IVN+  A    + V+ YFG+ A
Sbjct:    2 KIVSLSEIPQEPVSHNPE-----IKKQVMLRLGELPGLTNFSQARFAPGQTASAHAHDDMCEVFFVEAGSGIIRINNQEYSLLPGTCVAVEPTETHEIVNNGTA----ELVLTYFGLRA 111          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_106870625.1 (MULTISPECIES: cupin domain-containing protein [unclassified Cyanobacteria (miscellaneous)] >PSN11391.1 cupin domain-containing protein [filamentous cyanobacterium CCT1] >PSN77742.1 cupin domain-containing protein [filamentous cyanobacterium CCP4])

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 0
Query:   70 QIMFVGDLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGI 187
            +I  +  +P ++V+H P      I+K++LL +  +P LT FS+A   PGQ    H+H  M EVF+VESG GT  +D  P  +  G  + V P + H + N+      E+ V+ YFG+
Sbjct:    2 KITGLDQVPEEAVSHNP-----AIKKRVLLRSRDLPHLTNFSQASFAPGQVANGHSHTDMAEVFFVESGHGTITIDGQPYPLTPGICIAVEPGEHHEVANTG----SEELVLTYFGL 109          
BLAST of NO27G00130 vs. NCBI_GenBank
Match: WP_017661397.1 (cupin domain-containing protein [Geitlerinema sp. PCC 7105] >PPT07058.1 putative conserved protein contains double-stranded beta-helix domain [Geitlerinema sp. FC II])

HSP 1 Score: 80.1 bits (196), Expect = 8.200e-12
Identity = 41/111 (36.94%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   76 DLPFKSVNHLPDAQGRFIQKQLLLSTNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTAVGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGI 187
            ++P + V+H P+     I+KQ++L +  +P LT F++A   PGQ    H+H+ M EVF+VESG GT  +DD P  +  G  + V   + H I N+  A    + V+ YFG+
Sbjct:    8 NIPTQGVSHNPN-----IRKQVMLKSGDLPHLTNFAQARFAPGQVAAAHSHSDMCEVFFVESGSGTIRIDDTPYPLEPGTCIAVEVGEVHEITNTGNA----ELVLTYFGL 109          
The following BLAST results are available for this feature:
BLAST of NO27G00130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_007221390.17.100e-1639.32cupin domain-containing protein [Candidatus Jetten... [more]
CBN79041.14.600e-1539.67conserved unknown protein [Ectocarpus siliculosus][more]
PIU02211.14.600e-1534.17cupin domain-containing protein [Candidatus Shapir... [more]
WP_099531741.13.900e-1437.39cupin domain-containing protein [Limnothrix sp. PR... [more]
WP_085436246.18.700e-1437.93cupin domain-containing protein [unicellular cyano... [more]
OKY71192.12.500e-1336.52cupin [Limnothrix sp. CACIAM 69d][more]
WP_106256713.11.600e-1235.00cupin domain-containing protein [Leptolyngbya frig... [more]
WP_016866216.12.100e-1235.29cupin domain-containing protein [Fischerella musci... [more]
WP_106870625.13.700e-1235.90MULTISPECIES: cupin domain-containing protein [unc... [more]
WP_017661397.18.200e-1236.94cupin domain-containing protein [Geitlerinema sp. ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00130.1NO27G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00130.1NO27G00130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00130 ID=NO27G00130|Name=NO27G00130|organism=Nannochloropsis oceanica|type=gene|length=1515bp
ATGGGACGCACCGGCAAGTGTCCCTTTTATTGTTCCTCCTCATCTGGCAT
ATCCTATTCTTTCCTCCCTCCCGTCCACTCTCCCTCTGTCCTCCTTTACG
TGGTGCTAGCCATTGTCGTGTACGTGCTCGGGTACCTGCACGGCAAGGCG
GCAGgtaagtcgaaattgaagaaggacaggtggtaggagggagagaggga
gggaagagggggagacagctgtttgccatgctgctaggattaaaaatggg
tggtaaattatgggcgagagggagagggaaggaaggcaaagggggctggg
gatcagtgtctggcctggtgtttgagtgggggcgaatgggacaagctaca
ttgtcagcatccttgggcctcactaaatggaaggaagggcgtaggaggta
gcagggctgtatacgcgttcttataggagcaatggcatcaccacaaacct
ggccccttcctccccctccctccccacctgccctccccatctagTTCCCT
CCCCTCCCTTTCCCTCAACTGCCTCCACCAGCCCACCACCGAAAGGCCAA
ATAATGTTCGTGGGTGACCTGCCATTCAAGTCCGTTAACCACCTCCCCGA
TGCCCAGGGCCGATTTATTCAGAAACAGgtaggcttggagggagggaggg
agggggggacggacggaggaagacttgatgtcgtcaaggctcaaggagga
cgggagaaggaaaggtcaagaaagacaggtgaaagtattcatcatctcga
ctcctactcacactctgtccaaccctgcctccttcaccagCTTCTCCTCT
CTACCAACCAGATTCCCTCCCTGACGGGGTTTTCCCGCGCCGTTCTCAAG
CCAGGCCAGACGGTTGAGAGACACACGCACGCCTCTATGCACGAGGTGTT
TTGGGTGGAGAGCGGGAAGGgtaggtagggagggggggaacgagggagcg
agggagggagggagggagggaggggagccacagactcgccacaagccctc
ttccctccctccctcccgctgcctcttgttgctcaacgacgtttcgattg
gaaccagcgaaagggggtggacgccatctccttcttacctatcctccctc
cctccctccctcactcactcactcactcactcagGCACCTTTTTGCTCGA
CGACATGCCCACGGCCGTAGGAAGGGGGTGGTATATGCACGTCCCTCCCC
AACAGCCGCACTCCATCGTCAATAGgtagggaggagggcaggaggaaggg
aaagagagaaggagaaagggaagatggtaatgtgtttcccggccctcggc
tccatgagggatattctcatgaagcttgtcgacagatgagctcgtgtatc
ccttgcgaatgatagctcaacacgctcgcacaccatctcgcctcttccct
ccctccctccctcttcccctccctcctcccacccctccctccatgttttt
ccagCGCCCCAGCGTCGGAAGGAGAGGACTTCGTCGTCCTCTATTTCGGC
ATCGCCGCAGACTAG
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protein sequence of NO27G00130.1

>NO27G00130.1-protein ID=NO27G00130.1-protein|Name=NO27G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MGRTGKCPFYCSSSSGISYSFLPPVHSPSVLLYVVLAIVVYVLGYLHGKA
AVPSPPFPSTASTSPPPKGQIMFVGDLPFKSVNHLPDAQGRFIQKQLLLS
TNQIPSLTGFSRAVLKPGQTVERHTHASMHEVFWVESGKGTFLLDDMPTA
VGRGWYMHVPPQQPHSIVNSAPASEGEDFVVLYFGIAAD*
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Synonyms
Publications