NO27G00050, NO27G00050 (gene) Nannochloropsis oceanica

Overview
NameNO27G00050
Unique NameNO27G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2908
Alignment locationchr27:15089..17996 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:15089..17996 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR019787Znf_PHD-finger
Homology
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BLAST of NO27G00050 vs. NCBI_GenBank
Match: CBJ29001.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 100.1 bits (248), Expect = 2.200e-17
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 0 
Query:  355 VEHQHTLLEGNTLLNFAARCGCIKVSKYLILSLQASLLTQDVGGFTPLLNAVWRNDRPMVSFLLSLPACDLSYLHHKGMSRAEGPFDALEWAQNRNHPQVEELLQQKKRRLE 467
            V+H+H + EGNTLLNFA RCG  K  ++++  + A     D GGFTPLLN  WR D P++  LL+  A     L  KG+SR  GPF  LEWA+ +N P     L+  + R E
Sbjct:  263 VDHRHGIFEGNTLLNFAVRCGRRKCVEFILWQMGADTEIADYGGFTPLLNTAWRGDAPLLKTLLAAGA----RLDVKGVSRGVGPFSPLEWAERKNRPVTAAFLRSLEAREE 370
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BLAST of NO27G00050 vs. NCBI_GenBank
Match: EWM20412.1 (Zinc finger, RING/FYVE/PHD-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-8
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0 
Query:   14 ASASPPLPPSPPPVLYCVCRRPDDGSLMIECATCENWFHLHCFPPSAFAP 64
            A   P  PPSP   ++C+CR PDDGSLM+EC +C  WFHL C  P+AF P
Sbjct:   62 ALCDPVPPPSPSSSVHCLCRGPDDGSLMVECGSCLRWFHLRCLSPAAFVP 111
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BLAST of NO27G00050 vs. NCBI_GenBank
Match: EJK75941.1 (hypothetical protein THAOC_02319 [Thalassiosira oceanica])

HSP 1 Score: 68.2 bits (165), Expect = 9.100e-8
Identity = 53/177 (29.94%), Postives = 86/177 (48.59%), Query Frame = 0 
Query:  292 PRHAFFRIYTA--RASKE--RSMCDEALFKLYGLFQRQRGRDSVGQVKRVLAGLKASIRLRPLPCGIVEHQHTLLEGNTLLNFAARCGCIKVSKYLILSLQASLLTQDVGGFTPLLNAVWRNDRPMVSFLLSLPACDLSY--LHHKGMSRAEGPF---DALEWAQNRNHPQVEELLQ 460
            PR ++  +Y    RA +E  R   D+ L K   +  +    D + +++++L   +AS  +      +      +LE N+LLN A     +K+S++LI    A L + D GGF+PL+NA W  D+ MV +LL+   CD +   L H         F    A  WA+ R H  V +L++
Sbjct:  685 PRRSWASVYITKIRAEEEAARKKNDDILVKASAIIGK---ADQLLKLQKLLRKYRAS-AVGDFDFDVNYTSGVVLERNSLLNLAIIAERVKISRWLIEEKGADLESSDRGGFSPLINAAWNGDKKMVRYLLA-RGCDRNKVGLFHSSKGLCPPSFKGHTAEGWAKKRGHEDVADLIR 856
The following BLAST results are available for this feature:
BLAST of NO27G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
CBJ29001.12.200e-1744.64conserved unknown protein [Ectocarpus siliculosus][more]
EWM20412.11.100e-856.00Zinc finger, RING/FYVE/PHD-type, partial [Nannochl... [more]
EJK75941.19.100e-829.94hypothetical protein THAOC_02319 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR063ncniR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR116ngnoR116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00050.1NO27G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608771gene_10112Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101656g1gene9992Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00050.1NO27G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00050 ID=NO27G00050|Name=NO27G00050|organism=Nannochloropsis oceanica|type=gene|length=2908bp
ATGCACAGTGATGACAATTTGCACCTTATCTCCTCCTTGGCTTCGGCCTC
GCCACCCCTCCCTCCGTCGCCTCCCCCCGTACTCTATTGCGTGTGTCGAC
GTCCCGACGATGGGTCTCTAATGATTGAGTGTGCGACTTGTGAGAACTGG
TTTCACTTGCACTGCTTTCCTCCTTCAGCTTTTGCACCCTCCAAAAAGGA
CGTGGTGGAAGTGGAGGAAGGAGAAAAAGAGGAGGATGGTAATAGCGTCG
CTGCTGCAACTGAGCCTGCTGTTGGTGACGCGATGCAGTCAGGTGGAGAT
AGGAAAGAGACAGGGCAAGAAATAGAGAGGAAGGATCAGGATGCACAACA
GAACCTTGGTCACGAGGATTCGCAGGCAGATCGGCGACTAGAAAGCTCAA
CAGGGGTGTTTGAGAAGCCGGACAAAGAGGAGGAGGAGGACGAGGACGAG
GAGTGGACGTGCCCCGGgtgtgtccgtcgggaaaggattcgacaacgacg
tgcatttcggaagcgccagcgggaagaacaggaagaggaggaggaggacg
acaagggagtagAAGAGGGCCAGGAGGGGGGGAGGATTGGAGGGGGGTCG
GTGGGGAAGGGCCGGTGGAGAGGGGGGCGCGACGACGGGAAGCACGGCGA
CGACGCAACCTAGgtaggagcaggtcatggtttcgcgctttccctccttt
cgtactccccctccatcattttgaaggctttggaaagaagagaaccttgt
ggtgtttagctaaccacccttcttccctccttccctccctccttccctcc
ctccctccctccctccctccctcccttcctccctcccccccttcctctct
cccttctcccctctagCCCGCCATCTTTCCTTTCTCGAAGGCTTGCCTGA
CCCCTTGCTGCTGCATATCTGCCTTCTGCTGGACACTATGACAGAGACGA
TCGCCCTGGTCCGGGCTGCACCAGGGGTTGCTTTAGgtgaggaggggaga
ggggagggcggaaaggagggaggggaggagggagggagggagggggaaag
gaggaggactgacgctcgccttctcctttcccatattcccttcacagGGC
GACCCGCGATGTGGCGGGCGTTGAGCAAGGCCTTTCGTTTGCTGGAGGAG
GAAGAGGAGGAGGAGGAGGAGGAGgtgggggcggaagaggaggaggagaa
gggggaggagggggagaagaaggaaaacgacgggagaaatagggcaaaat
gcatgcagacgacaagtgcgacgacgataatgagcagGAAAAGGAGGAGG
AGGAGCAAACGACAGCTAATGCGGGAGGGACGGCTTGGGAGAGGAGGAGG
GGGGGAGGAGGACATGAAGTAGGAGGTGGGCAGTGGCTGGACTGTCCTCG
ACACGCCTTCTTCCGCATgtaagtcttattaagtctttctcgaaatccat
ctggtctagtttaacctagtctaatctctaatctagctaatctaatctct
gatctaatctctaatctaatctctaatctataaatctaacccagtctaat
ttagcctaattttgcggcgccctcaacaccctctcttctccttcggtcct
ccctccctccctccctccctccctagCTACACTGCCAGGGCCTCCAAGGA
ACGCTCGATGTGCGACGAAGCCCTTTTCAAGCTCTACGGCCTCTTCCAGA
GACAGCGGGGCCGTGACTCCGTCGGACAGGTCAAGCGTGTGCTGGCTGGA
CTCAAGgtgggtaggttggaggagccctccctccctctctatctccctct
ctccctccccctgctcccctctctcccattttcccctctgccctcctcag
actccccaattgacctcttccctcgggaccctccctccttccctccctcc
ctcccttgctccctcgctctctcgctctcttcctccccctttgcccgctc
tctgattctcctagGCCAGCATCCGTCTCCGTCCCCTTCCCTGCGGTATC
GTGGAGCACCAGCACACGCTCCTGGAAGGAAACACCCTACTTAATTTTGC
TGCCCGCTGTGGCTGCATCAAAgtacgctccctccctttctccctccctc
cctttgtctttccctcaatcccttcctccgggtatacggttttacccatg
ccgaagatttctccttttctatcgtcacctcatccctccacccctccctc
tttccctcccacagGTCAGCAAGTACCTGATCCTCTCTCTCCAGGCCTCC
CTCCTCACCCAGGACGTGGGCGGTTTCACTCCCTTGCTCAACGCCGTCTG
GCGGAACGACCGGCCCATGGTCTCCTTCCTCCTTTCCCTGCCGGCCTGCG
ACTTGTCCTACTTGCACgtagggaaaccctaaccctaaccctaacctttt
ttctgctccctcttactcgctgtattccctcttgcttctgccctctcccg
cttccgcccctctctccctccctccctcccttctcttgtgtccgtgctgt
tctccggccgagtgcaccctcatcctccccccctcctctcctccttccct
cccaccctccctcgtccagCACAAAGGCATGTCACGTGCCGAGGGCCCCT
TCGACGCCTTAGAGTGGGCACAGAATCGGAACCATCCCCAGGTGGAAGAG
CTCTTGCAACAGAAGAAGAGGAGGCTGGAGGGAGGGAGGGAGGGAGGGAG
GGGTGGAGGAAGGGGGGGAGGGGAGGGGTGTGGGGACCTCTTCCTTGTGG
TGGGGCTGCGGGGGAGCAGCAGCGAAAGGAGTGGGATGGAAAGGGGGCAG
TGGAGAAGGTGGAGAAGGATGGAGAGGGAGAGAACAAAGAGAAGGAGGGA
GGACGGGGAGGAGGGGAAGGGGGAGGGCAGGCCACGCCCTGCACGCCTCA
GAAGATGA
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protein sequence of NO27G00050.1

>NO27G00050.1-protein ID=NO27G00050.1-protein|Name=NO27G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MHSDDNLHLISSLASASPPLPPSPPPVLYCVCRRPDDGSLMIECATCENW
FHLHCFPPSAFAPSKKDVVEVEEGEKEEDGNSVAAATEPAVGDAMQSGGD
RKETGQEIERKDQDAQQNLGHEDSQADRRLESSTGVFEKPDKEEEEDEDE
EWTCPGRGPGGGEDWRGVGGEGPVERGARRREARRRRNLARHLSFLEGLP
DPLLLHICLLLDTMTETIALVRAAPGVALGRPAMWRALSKAFRLLEEEEE
EEEEEEKEEEEQTTANAGGTAWERRRGGGGHEVGGGQWLDCPRHAFFRIY
TARASKERSMCDEALFKLYGLFQRQRGRDSVGQVKRVLAGLKASIRLRPL
PCGIVEHQHTLLEGNTLLNFAARCGCIKVSKYLILSLQASLLTQDVGGFT
PLLNAVWRNDRPMVSFLLSLPACDLSYLHHKGMSRAEGPFDALEWAQNRN
HPQVEELLQQKKRRLEGGREGGRGGGRGGGEGCGDLFLVVGLRGSSSERS
GMERGQWRRWRRMERERTKRRREDGEEGKGEGRPRPARLRR*
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Synonyms
Publications