NO27G00010, NO27G00010 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20408.1 (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana]) HSP 1 Score: 263.8 bits (673), Expect = 2.000e-66 Identity = 138/171 (80.70%), Postives = 153/171 (89.47%), Query Frame = 0 Query: 237 LRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVLGL 408 LR LVFATNVLNNISLGCTAPFLQHHLE HYEQSYQS+GLVFA+FPLVALLCSPLGA LCRAGRDK+LVWQ GL+ S+LA++GFGLA SV + LLMRGLQGLGFALSTIAGLGLLIE +PDLTADIARQEVLVG+SMV+APA GG LY+ AGFAA+F +LA F +L GL Sbjct: 39 LRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGL 209
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20407.1 (hypothetical protein Naga_100637g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 85.5 bits (210), Expect = 9.800e-13 Identity = 77/145 (53.10%), Postives = 85/145 (58.62%), Query Frame = 0 Query: 752 GLLMEVLPQRREVGCSGSGVAGEEGCVTGFRWTTASISVALAIAGCICYVGLANEGVG---DEAAGSTPVAESXXXXXXXXXXXXSAGMGEGGERVYKPPTVAVPSPPHLQRRLSRPPTPISLASLRVPSTTSIAKPRTSSLSSS 894 G LME LPQRR +GCSG E C +GFRWTT ++VAL AG +C GLA E G E G XXXXXXXXXXXX A + +V SP H RRLSRP TPISLASLRVPSTTS+ S LSSS Sbjct: 1 GFLMESLPQRRVLGCSGG-----EDCASGFRWTTFCMAVALVGAGVVCRAGLAEEAKGGGAGEEGGQXXXXXXXXXXXXXXXXXXGACVR------------SVSSPAHHPRRLSRPQTPISLASLRVPSTTSL-----SGLSSS 123
BLAST of NO27G00010 vs. NCBI_GenBank
Match: XP_005853905.1 (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >EKU22459.1 permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 84.7 bits (208), Expect = 1.700e-12 Identity = 141/595 (23.70%), Postives = 218/595 (36.64%), Query Frame = 0 Query: 207 HTPLLTVLPSASSLPTPTS---------------TLAIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCS-PLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVLGLTAGRKXXXXXXXXXXXXXXXXXGPWWIMSSWPGSVSNWCWCSRGGAAEAQEGSRGEQEGREDEAATALLIPPENMAITKRESQQFPPSPSPPVSLLRMLLLPGVLSAALLVMVSFNSISFLELAFAGHAEAALGLAPLGTGLLFSCVDIAYAACAYLMARARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGF-SFLNLRALALAGLACQALAMCLLGPLPLFSLPLPPFLPPSLLAWLSVACGCLVAGVGEALALVPAVDLMRAALPPSLFLATSDGNNSEQGATGHLAAVMSAATSLGECVGPLLGGLLMEVLPQRREVGCSGSGVAGEEGCVTGFRWT 785 H P L PS+SSL TS QS + +V T ++ I PF H + + G++F+++PL L S +G R GR V+ GL+ ++GFG + +++MR +QG+G +AG+ LL++ S ++ D+ + +GL +L P G +LY Y GF + LVLG + G + P ++ A ++ E ++G + D++ + P ++ + + P S P S + LP +L A + +F S+ + H E ALG + G F + + + L A GF L + L GL L LGP P F L LP + AW+ G + GVG A +V V LM + L + G+ E ++AV SAA+SLGE GP+LGG++ E LP RRE+ C+ G C TG WT Sbjct: 44 HLPALQ--PSSSSLDCATSYKYSVEANAQAEANTAKRRQSRTRNTVLAMVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGR--AFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRD---------LNLVLGAIPIAQLFLFPFVAPSIPSLTSVGDTASTGTSP---------AKDDAPQSLEPAKGRTKPPSDDSLSLRTPIPTSLGVPSL-LLEAPASLHPAQSFFALTSLP-ILVVATTSVFAFTSLGLFDPLVLPHLERALGASVQAVGGTFMIPCVVFTGVS-LFAE--------------------------------------------------------------------GFMKRLGYKQSILMGLTLMVLGFLCLGPAP-FLLGLP---WTRVGAWIDQVLGFVFFGVGFAFVVVAVVPLMHSYLKHA-------GSEKED----FISAVNSAASSLGEFAGPILGGVMFEKLPARREISCTEGGDLNH--CETGAAWT 528
BLAST of NO27G00010 vs. NCBI_GenBank
Match: XP_005852431.1 (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >EKU23401.1 major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 71.6 bits (174), Expect = 1.500e-8 Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 0 Query: 228 AIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVL 406 +++S PL LR + ++ + C P+ +++ + S GL+F++ +V L PL L RA + + +GLV +L FG+ +S+ ++ R LQG+G ++GL LL+ S DL DI E G+ +L P GG L GF A+F ++ + + L+L Sbjct: 89 SLKSGPLM-LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALIL 264
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM21678.1 (Major facilitator superfamily domain protein [Nannochloropsis gaditana]) HSP 1 Score: 71.2 bits (173), Expect = 1.900e-8 Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 0 Query: 221 PTPTSTLAIQSPPLRP------LRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLG-LVTSVLASLG----FGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLV 405 PTP +T +Q+ P P LR + + + + GC PF +++ +++ + G +F+V LV L PL A + + +LG L ++L +G FGL+ A L R LQG+G + +AGL LL+ SPD+ DI E L + P GGL++ + G +F +L + F+L + Sbjct: 25 PTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHR------ITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFL 213
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20208.1 (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 70.5 bits (171), Expect = 3.200e-8 Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 0 Query: 228 AIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVL 406 +++S PL LR + ++ + C P+ +++ + S GL+F++ +V L PL L RA + + +GLV +L FG+ +S+ ++ R LQG+G ++GL LL+ S DL DI E G+ +L P GG L GF A+F ++ + + L+L Sbjct: 89 SLKSGPLM-LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALIL 264 The following BLAST results are available for this feature:
BLAST of NO27G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO27G00010 ID=NO27G00010|Name=NO27G00010|organism=Nannochloropsis oceanica|type=gene|length=2940bpback to top protein sequence of NO27G00010.1 >NO27G00010.1-protein ID=NO27G00010.1-protein|Name=NO27G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=956bpback to top Synonyms
Publications
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