NO27G00010, NO27G00010 (gene) Nannochloropsis oceanica

Overview
NameNO27G00010
Unique NameNO27G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2940
Alignment locationchr27:414..3353 -

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Properties
Property NameValue
DescriptionVesicular acetylcholine transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr27genomechr27:414..3353 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR036259MFS_trans_sf
IPR011701MFS
Homology
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20408.1 (vesicular acetylcholine transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 263.8 bits (673), Expect = 2.000e-66
Identity = 138/171 (80.70%), Postives = 153/171 (89.47%), Query Frame = 0
Query:  237 LRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVLGL 408
            LR LVFATNVLNNISLGCTAPFLQHHLE HYEQSYQS+GLVFA+FPLVALLCSPLGA LCRAGRDK+LVWQ GL+ S+LA++GFGLA SV + LLMRGLQGLGFALSTIAGLGLLIE +PDLTADIARQEVLVG+SMV+APA GG LY+ AGFAA+F +LA  F +L  GL
Sbjct:   39 LRTLVFATNVLNNISLGCTAPFLQHHLEVHYEQSYQSAGLVFAIFPLVALLCSPLGAFLCRAGRDKYLVWQSGLLVSLLAAIGFGLARSVPVFLLMRGLQGLGFALSTIAGLGLLIERTPDLTADIARQEVLVGVSMVVAPALGGFLYSLAGFAAVFVVLAVCFGVLAAGL 209          
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20407.1 (hypothetical protein Naga_100637g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 9.800e-13
Identity = 77/145 (53.10%), Postives = 85/145 (58.62%), Query Frame = 0
Query:  752 GLLMEVLPQRREVGCSGSGVAGEEGCVTGFRWTTASISVALAIAGCICYVGLANEGVG---DEAAGSTPVAESXXXXXXXXXXXXSAGMGEGGERVYKPPTVAVPSPPHLQRRLSRPPTPISLASLRVPSTTSIAKPRTSSLSSS 894
            G LME LPQRR +GCSG      E C +GFRWTT  ++VAL  AG +C  GLA E  G    E  G       XXXXXXXXXXXX A +             +V SP H  RRLSRP TPISLASLRVPSTTS+     S LSSS
Sbjct:    1 GFLMESLPQRRVLGCSGG-----EDCASGFRWTTFCMAVALVGAGVVCRAGLAEEAKGGGAGEEGGQXXXXXXXXXXXXXXXXXXGACVR------------SVSSPAHHPRRLSRPQTPISLASLRVPSTTSL-----SGLSSS 123          
BLAST of NO27G00010 vs. NCBI_GenBank
Match: XP_005853905.1 (permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526] >EKU22459.1 permease (major facilitator superfamily) [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.7 bits (208), Expect = 1.700e-12
Identity = 141/595 (23.70%), Postives = 218/595 (36.64%), Query Frame = 0
Query:  207 HTPLLTVLPSASSLPTPTS---------------TLAIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCS-PLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVLGLTAGRKXXXXXXXXXXXXXXXXXGPWWIMSSWPGSVSNWCWCSRGGAAEAQEGSRGEQEGREDEAATALLIPPENMAITKRESQQFPPSPSPPVSLLRMLLLPGVLSAALLVMVSFNSISFLELAFAGHAEAALGLAPLGTGLLFSCVDIAYAACAYLMARARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGF-SFLNLRALALAGLACQALAMCLLGPLPLFSLPLPPFLPPSLLAWLSVACGCLVAGVGEALALVPAVDLMRAALPPSLFLATSDGNNSEQGATGHLAAVMSAATSLGECVGPLLGGLLMEVLPQRREVGCSGSGVAGEEGCVTGFRWT 785
            H P L   PS+SSL   TS                   QS     +  +V  T ++  I      PF   H + +        G++F+++PL   L S  +G    R GR    V+  GL+     ++GFG    +  +++MR +QG+G     +AG+ LL++ S ++  D+   +  +GL  +L P  G +LY Y GF           + LVLG     +                 G      + P         ++  A ++ E ++G  +   D++ +     P ++ +      + P S  P  S   +  LP +L  A   + +F S+   +     H E ALG +    G  F    + +   + L A                                                                     GF   L  +   L GL    L    LGP P F L LP      + AW+    G +  GVG A  +V  V LM + L  +       G+  E      ++AV SAA+SLGE  GP+LGG++ E LP RRE+ C+  G      C TG  WT
Sbjct:   44 HLPALQ--PSSSSLDCATSYKYSVEANAQAEANTAKRRQSRTRNTVLAMVIVTELIVQILSAAMVPFFPDHAKRYLNADSTIVGVIFSLYPLSLFLTSLVIGMASARFGR--AFVYTSGLILLGGGTVGFGFCNDLTSIMIMRVVQGIGGGCINVAGMALLLQVSINIERDVGLDQAAIGLGYILGPPLGAILYAYMGFRD---------LNLVLGAIPIAQLFLFPFVAPSIPSLTSVGDTASTGTSP---------AKDDAPQSLEPAKGRTKPPSDDSLSLRTPIPTSLGVPSL-LLEAPASLHPAQSFFALTSLP-ILVVATTSVFAFTSLGLFDPLVLPHLERALGASVQAVGGTFMIPCVVFTGVS-LFAE--------------------------------------------------------------------GFMKRLGYKQSILMGLTLMVLGFLCLGPAP-FLLGLP---WTRVGAWIDQVLGFVFFGVGFAFVVVAVVPLMHSYLKHA-------GSEKED----FISAVNSAASSLGEFAGPILGGVMFEKLPARREISCTEGGDLNH--CETGAAWT 528          
BLAST of NO27G00010 vs. NCBI_GenBank
Match: XP_005852431.1 (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >EKU23401.1 major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.6 bits (174), Expect = 1.500e-8
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 0
Query:  228 AIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVL 406
            +++S PL  LR  +      ++  + C  P+   +++  +  S    GL+F++  +V  L  PL   L RA   + +   +GLV     +L FG+ +S+   ++ R LQG+G     ++GL LL+  S DL  DI   E   G+  +L P  GG L    GF A+F ++ +  + L+L
Sbjct:   89 SLKSGPLM-LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLMIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALIL 264          
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM21678.1 (Major facilitator superfamily domain protein [Nannochloropsis gaditana])

HSP 1 Score: 71.2 bits (173), Expect = 1.900e-8
Identity = 58/195 (29.74%), Postives = 95/195 (48.72%), Query Frame = 0
Query:  221 PTPTSTLAIQSPPLRP------LRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLG-LVTSVLASLG----FGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLV 405
            PTP +T  +Q+ P  P      LR  +  +   + +  GC  PF   +++ +++ +    G +F+V  LV  L  PL A +         + +LG L  ++L  +G    FGL+   A  L  R LQG+G  +  +AGL LL+  SPD+  DI   E    L  +  P  GGL++ + G   +F +L + F+L +
Sbjct:   25 PTPATTSVLQASPKPPFHSFWALRAFLCCSITWSAVMTGCLGPFFPLYMKENFQATTTLVGFIFSVTSLVQFLTCPLVAHISHR------ITRLGSLRLAILILIGGGFIFGLSHHAAGFLAGRLLQGMGNGVLEVAGLSLLMRHSPDIRRDIGLLEGSSALGFLFGPLLGGLIFHWWGIRTLFLLLTAPFLLFL 213          
BLAST of NO27G00010 vs. NCBI_GenBank
Match: EWM20208.1 (major facilitator superfamily mfs_1 [Nannochloropsis gaditana])

HSP 1 Score: 70.5 bits (171), Expect = 3.200e-8
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 0
Query:  228 AIQSPPLRPLRGLVFATNVLNNISLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGRDKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGLLIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGFMLLVL 406
            +++S PL  LR  +      ++  + C  P+   +++  +  S    GL+F++  +V  L  PL   L RA   + +   +GLV     +L FG+ +S+   ++ R LQG+G     ++GL LL+  S DL  DI   E   G+  +L P  GG L    GF A+F ++ +  + L+L
Sbjct:   89 SLKSGPLM-LRFFITFGIAWSSTIISCLGPYFPLYVKRKFGASSTLLGLIFSITSIVQFLTCPLVGPLSRA-FSRLVTLIIGLVVLAAGALLFGMLDSIPGFIIGRLLQGIGNGFLEVSGLSLLMRFSTDLRRDIGLLEGASGVGSLLGPLIGGFLSARLGFRALFGMMTAPLLALIL 264          
The following BLAST results are available for this feature:
BLAST of NO27G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM20408.12.000e-6680.70vesicular acetylcholine transporter, partial [Nann... [more]
EWM20407.19.800e-1353.10hypothetical protein Naga_100637g1, partial [Nanno... [more]
XP_005853905.11.700e-1223.70permease (major facilitator superfamily) [Nannochl... [more]
XP_005852431.11.500e-829.21major facilitator superfamily mfs 1, partial [Nann... [more]
EWM21678.11.900e-829.74Major facilitator superfamily domain protein [Nann... [more]
EWM20208.13.200e-829.21major facilitator superfamily mfs_1 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR116ngnoR116Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO27G00010.1NO27G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101237g1gene9997Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO27G00010.1NO27G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO27G00010 ID=NO27G00010|Name=NO27G00010|organism=Nannochloropsis oceanica|type=gene|length=2940bp
GTTGCGAAGGAGAAATTCAAACGTGGGTATGGTGGCAATGCATTGCAAAA
GACTGTGTCCCTGACCATGTATGCGCTGGTGCGGCAAATCAATACGCATG
TGGGCGAGCTTTGTGGATAAGCATGCTCTTGTCAACCCGCTTGCTCTACC
TGCCACCCACACCACACTTGTCTCTCCTTTTGCCTTGCTCCTTCTCGAAA
TATTTTACTTGCTCATCCTCACTCACACCACTAGGCACCACATCCACCTC
GCCCTGCTCAGAGGGAAACTGGCCTTCGAAGACCCTGTAGTCACTCCGCC
CCACGAAGAGGAGCAGATCAGTCCAAGGTGGAAGAGGGAGAAGAAGAAAA
GGAAAGGAGAGCTCCAAGACGAGACGGTCGAACTCCTCCAGCAACAGGAG
CAAGGACAGGAGCGGCAGAAGAAGCAGCAGGCAAAGGACCCACAGAAGCC
CCAGTTCGAGCAAGAGGAGGAGGAAGAAGAGGGTTCAGGCCTCGCTTCAC
TGTGTGACCCTTGCCACCACCTTAAGGGAAGTGGTGCGGGAAAGGACGAA
AACAGCTGCGCCGTCTCCGATTACGGCACCGCGTGGATTACCCCAACAGC
CACCACCACGACTGTCCGCCCACTGTATGCCCCTGTGCCCTCCCGCCCCA
TTCAACCCATAATGCCCACGCAACACACCGACGATGCTCACACGCCCCTT
TTGACCGTCCTTCCTTCTGCCTCCAGCCTACCTACTCCTACCTCTACCCT
TGCGATACAATCGCCGCCGCTCCGTCCCCTCCGCGGCCTAGTCTTTGCCA
CCAACGTCCTGAACAATATCTCCCTGGGCTGTACGGCGCCCTTTCTGCAG
CACCACTTGGAGACCCACTACGAGCAAAGCTACCAGTCCTCAGGCCTCGT
CTTCGCCGTCTTCCCCCTCGTGGCCCTCCTCTGCTCCCCCCTGGGTGCTG
TCCTGTGCCGAGCCGGTCGGGACAAATTCCTGGTCTGGCAGCTAGGGCTT
GTGACGAGCGTGCTGGCCTCGCTTGGCTTCGGGCTTGCGGAGTCCGTGGC
TCTTCTGCTCCTTATGCGGGGCTTGCAAGGCCTGGGCTTCGCCCTCTCCA
CCATCGCAGGGCTCGGCCTCCTGATCGAGTGCTCGCCGGATCTGACTGCG
GACATCGCCCGACAAGAAGTGCTGGTGGGCCTGTCTATGGTCCTCGCCCC
CGCGGCGGGAGGGCTGCTGTACACCTATGCGGGCTTTGCAGCCATCTTCA
ACATCCTCGCCAGCGGCTTCATGCTCCTTGTGCTGGGGTTGACGGCAGGG
CGGAAACTGGGGTATCTCGGGGGCAGGGAAGGAGAGAGGGAAGGAGAGGA
GGAGGGTGGACCGTGGTGGATCATGTCCTCTTGGCCAGGCTCGGTGTCGA
ACTGGTGCTGGTGTTCGCGGGGAGGAGCAGCAGAGGCACAGGAGGGAAGC
AGGGGTGAGCAGGAAGGAAGAGAAGATGAAGCAGCCACGGCTCTTCTGAT
TCCGCCAGAAAACATGGCAATAACCAAGAGGGAAAGCCAGCAGTTTCCTC
CTTCTCCCTCCCCTCCCGTCTCTCTTCTCCGCATGCTCCTCCTACCTGGC
GTGCTGTCCGCGGCGCTGTTGGTGATGGTCTCGTTCAACAGCATCAGCTT
CCTCGAACTCGCCTTTGCCGGCCACGCCGAGGCAGCCCTAGGCCTCGCGC
CCTTGGGGACGGGGCTTCTATTTTCCTGTGTCGATATTGCGTATGCCGCG
TGTGCTTACCTTATGGCTCGGGCCAGGAAGAGGGGGAAGGAAGAAAGCGA
GGGAGGAAGAGAAGAGGAGGAAGAGGACAGCTTAAATTGCAGTCGAAGAG
GAGAAGACGAACAGATTGGGGAAGAACAACAACGCAAACCTTCTCGCTCG
TCGTCTACCTCCTCCACCACCTCCAATTCCTCGTGCTCTTCCTCCTCCTC
CTCTATCTCCTCCTCCTCCCGCTTCGGCTTTTCTTTCCTCAACCTCCGCG
CACTCGCCTTAGCCGGCCTCGCCTGCCAGGCCTTGGCCATGTGCCTCCTC
GGCCCCCTACCCCTCTTCTCCCTTCCCCTACCCCCTTTCCTCCCGCCCTC
GCTCCTGGCCTGGCTGAGCGTGGCGTGCGGGTGTTTGGTGGCCGGGGTGG
GGGAAGCCTTGGCCCTCGTACCTGCGGTAGACTTAATGCGGGCGGCCCTG
CCTCCTTCTCTTTTCCTCGCCACGAGCGACGGCAACAATAGCGAACAGGG
TGCTACAGGGCATCTGGCGGCCGTCATGAGCGCGGCCACGAGCCTGGGGG
AGTGCGTGGGGCCACTCCTCGGAGGCCTGCTCATGGAGGTGCTTCCTCAG
CGGAGGGAGGTGGGTTGCTCCGGAAGCGGGGTCGCGGGAGAGGAAGGGTG
TGTGACGGGCTTTCGATGGACAACGGCCTCGATTTCGGTGGCCTTGGCAA
TCGCGGGCTGTATTTGTTATGTAGGGCTCGCCAACGAAGGGGTGGGGGAC
GAGGCGGCAGGATCAACACCAGTTGCCGAATCAGTTGCAGCAGCAGCAGC
AGCCGTGGCGGAGGAGGGCAGTGCGGGGATGGGAGAGGGAGGGGAGCGTG
TCTACAAGCCACCCACCGTCGCTGTTCCTTCGCCACCACATCTACAACGG
CGCCTCTCCCGACCCCCCACACCCATCTCGCTGGCTTCCTTGCGTGTACC
TTCCACTACTTCCATTGCCAAGCCGAGGACCTCTTCGCTGTCCTCATCGA
TCGAAGGAAGTCGACGGAGAAGTAGCACGGGGGGGGGGGGTTGCTTGGAA
GTAAGACGGCAGATACCGGACACAGTTCGAGATTACAATCCCAGGTTGGA
AAATATTAGAAAGATAGGGCAGGATTCAAATTGCAGGGACGGTCAAAATA
CATGCACTCCAAATTATGAAAGAAAAATAACTGAGCCGGA
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protein sequence of NO27G00010.1

>NO27G00010.1-protein ID=NO27G00010.1-protein|Name=NO27G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=956bp
MRWCGKSIRMWASFVDKHALVNPLALPATHTTLVSPFALLLLEIFYLLIL
THTTRHHIHLALLRGKLAFEDPVVTPPHEEEQISPRWKREKKKRKGELQD
ETVELLQQQEQGQERQKKQQAKDPQKPQFEQEEEEEEGSGLASLCDPCHH
LKGSGAGKDENSCAVSDYGTAWITPTATTTTVRPLYAPVPSRPIQPIMPT
QHTDDAHTPLLTVLPSASSLPTPTSTLAIQSPPLRPLRGLVFATNVLNNI
SLGCTAPFLQHHLETHYEQSYQSSGLVFAVFPLVALLCSPLGAVLCRAGR
DKFLVWQLGLVTSVLASLGFGLAESVALLLLMRGLQGLGFALSTIAGLGL
LIECSPDLTADIARQEVLVGLSMVLAPAAGGLLYTYAGFAAIFNILASGF
MLLVLGLTAGRKLGYLGGREGEREGEEEGGPWWIMSSWPGSVSNWCWCSR
GGAAEAQEGSRGEQEGREDEAATALLIPPENMAITKRESQQFPPSPSPPV
SLLRMLLLPGVLSAALLVMVSFNSISFLELAFAGHAEAALGLAPLGTGLL
FSCVDIAYAACAYLMARARKRGKEESEGGREEEEEDSLNCSRRGEDEQIG
EEQQRKPSRSSSTSSTTSNSSCSSSSSSISSSSRFGFSFLNLRALALAGL
ACQALAMCLLGPLPLFSLPLPPFLPPSLLAWLSVACGCLVAGVGEALALV
PAVDLMRAALPPSLFLATSDGNNSEQGATGHLAAVMSAATSLGECVGPLL
GGLLMEVLPQRREVGCSGSGVAGEEGCVTGFRWTTASISVALAIAGCICY
VGLANEGVGDEAAGSTPVAESVAAAAAAVAEEGSAGMGEGGERVYKPPTV
AVPSPPHLQRRLSRPPTPISLASLRVPSTTSIAKPRTSSLSSSIEGSRRR
SSTGGGGCLEVRRQIPDTVRDYNPRLENIRKIGQDSNCRDGQNTCTPNYE
RKITEP
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Synonyms
Publications