NO26G01750, NO26G01750 (gene) Nannochloropsis oceanica

Overview
NameNO26G01750
Unique NameNO26G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1063
Alignment locationchr26:578395..579457 +

Link to JBrowse

Properties
Property NameValue
DescriptionCollagen triple helix repeat (20 copies)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:578395..579457 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Homology
The following BLAST results are available for this feature:
BLAST of NO26G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01750.1NO26G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01750.1NO26G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01750 ID=NO26G01750|Name=NO26G01750|organism=Nannochloropsis oceanica|type=gene|length=1063bp
CCTCTCATGGAAGCTTTTGTTGCTAAATGCCTTTGACTCCATGCAACACA
CACGTCCTGACTTAGAACCCATATCTCTCTCATTCTCACACACCACCATA
CTGCACGGCGCTATAGTGCGCTGTATATTTATAATATTACGCAACGCGCT
CCCCTTAAGACAGTGTTCTCTCTGCTTGCGCAGCGCAACTTGACAACCTT
TCCCACACTCTTTTCCTTCCATTCTCTTGCATTATAACCTGCACAGTTTT
ATCGCCCCCCAGTGCCCCAACCAGTCCAAACCCTAAGCATGCGCCGTGCC
TTCACGCTCACCGTCCTCGTGGCCATCGCCAGCCTCTCTGCCCTCTCATC
CGCTGCCGACACCGACAAGACCATCTTTGACTCCAATCCGAAGACTTTTA
CTTGCCCCCCTTTTAGTATTTGTGTCACCGGGCCGAAAGGTGAAACAGGT
GATCGCGGTCCTCAGGGTGAAACCGGTCCTCAGGGTGAGAAAGGTATGCA
GGGCGAGCAAGGTATCCAGGGCGACCAAGGTCCTGAGGGTCCAACAGGTC
CTATGGGTCCACGCGGGCCTCCTGGCAAGACCAAACACGAGTACTACTAC
GAGCCTCACCCCCACCAGGACAAGGAAGAGTACTACGGTGAGAAGAAGGG
ACACCATGATACCAGGAAGTACGCAAATGCGGAGAAGGGGCGCGAGGGGG
GGAAAGGCAACCACGGCTGGCACGAGGGGAATGGAGAGTACGAGCCTCAC
TACAGCTATGGCGACAAGAAGCACAAGAAGGGCTGGAAGCGCGATGATGC
TTACGATTCTTATGAAGCTGCCAAATACACGAAGGAGGGGAAGCACGAGC
GGGGCTATGGGGGGAAGACGCACGGAACTGGTAGGAAGGGTGAATACCTG
CGCCAAAATAAGGACAACTAAGCTCTGGGTGTGTGGGCAAAAGGACCAAA
GAAATTTCCAAGGACTTAATTGTAGTGTGGGGGTTAGGGGAGAAAAAGGA
ATAAAGCCAAAATCGAAGACAGGGATCCCTATTGTGCAGCAGCTTGACTA
AATATTGTTGGTA
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protein sequence of NO26G01750.1

>NO26G01750.1-protein ID=NO26G01750.1-protein|Name=NO26G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRRAFTLTVLVAIASLSALSSAADTDKTIFDSNPKTFTCPPFSICVTGPK
GETGDRGPQGETGPQGEKGMQGEQGIQGDQGPEGPTGPMGPRGPPGKTKH
EYYYEPHPHQDKEEYYGEKKGHHDTRKYANAEKGREGGKGNHGWHEGNGE
YEPHYSYGDKKHKKGWKRDDAYDSYEAAKYTKEGKHERGYGGKTHGTGRK
GEYLRQNKDN*
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Synonyms
Publications