NO26G01720, NO26G01720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G01720 vs. NCBI_GenBank
Match: EWM29860.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 211.1 bits (536), Expect = 3.400e-51 Identity = 108/175 (61.71%), Postives = 133/175 (76.00%), Query Frame = 0 Query: 34 MAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKGL 209 M+ D+IG DVETGG+FDPL FSKD L K+R VELKHGR+AML LG +Q+ HLPD VFSNPRPL AL Q+ +ERPLA++Q++ AIT IE+ +GKQ APG L +FG FKPE E E AA+QLKELKNGRLAM+A +G VQEL+TGQG EQ++SG++ GDG+GL Sbjct: 1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSY-THLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGL 174
BLAST of NO26G01720 vs. NCBI_GenBank
Match: CEM27246.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 210.7 bits (535), Expect = 4.400e-51 Identity = 119/211 (56.40%), Postives = 150/211 (71.09%), Query Frame = 0 Query: 1 MKFAAFACLASLMGA----SAFVAPAP-------KQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQS-ENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNV 200 MK A A L + A +AFV AP + +RS +M+V+++IGADVETGG+FDPL FS+D L + RAVELKHGRIAML LG ++Q+AG+HLPDPVFS PRPL+AL +V TERP A Q++AAI IEL G+Q EN+APGDL FG+ FK D EE+ QL+ELKNGRLAMI MG++VQE +TGQ +WEQ+ SGN+ Sbjct: 1 MKCVAVASLLLIAVAYGEEAAFVPSAPLRSLPTRRALRST-TPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNI 210
BLAST of NO26G01720 vs. NCBI_GenBank
Match: EWM23208.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 207.6 bits (527), Expect = 3.700e-50 Identity = 103/110 (93.64%), Postives = 108/110 (98.18%), Query Frame = 0 Query: 1 MKFAAFACLASLMGASAFVAPAPKQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVS 111 MKFAAFACLASL+GASAFVAPAPKQ RSRGMARMAVDDLIGADVETGGIFDPLNFSKDA+KLDK+RAVELKHGR+AMLGVLGIWIQAAGLHLPDPVFSNPRPLAA +QVS Sbjct: 1 MKFAAFACLASLIGASAFVAPAPKQTRSRGMARMAVDDLIGADVETGGIFDPLNFSKDAEKLDKYRAVELKHGRVAMLGVLGIWIQAAGLHLPDPVFSNPRPLAAFLQVS 110
BLAST of NO26G01720 vs. NCBI_GenBank
Match: EWM30498.1 (light-harvesting protein [Nannochloropsis gaditana]) HSP 1 Score: 201.4 bits (511), Expect = 2.700e-48 Identity = 116/204 (56.86%), Postives = 146/204 (71.57%), Query Frame = 0 Query: 5 AFACLASLMGASAFVAPAPKQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQ-SENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKG 208 AFA LA L ++AF+ AP+ R R + RMAV+++IG+DVET G+FDPL +KD L + R +ELKHGR+AML LG +Q+ HLPD VFSNPRPLAAL QV +ERP+A Q+ AI IEL GKQ + N+APGD+ FG F P+D E++AALQLKELKNGRLAM+A +G VQE +TGQG EQL G+ GDG+G Sbjct: 4 AFAFLALLGVSTAFMPTAPRMTRGRSV-RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSF-YHLPDEVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQG 204
BLAST of NO26G01720 vs. NCBI_GenBank
Match: CEM11606.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 193.4 bits (490), Expect = 7.300e-46 Identity = 111/214 (51.87%), Postives = 139/214 (64.95%), Query Frame = 0 Query: 1 MKFAAFACLASLMGASAFVAPAPKQ--MRSRGMARM-----AVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKG 208 MK A ++GA AFV P Q +RSRG AR AVD L GADVETGG++DPL S++ D L +RA ELKHGR+ M+ VLG+ +Q LPDPVF+NPRPL A+VQV +RP A++Q+L AI EL +QS PG L FG F+P DE ++ LQ KELKNGRLAMI G+LVQE +TGQG EQ+ G++ GDG+G Sbjct: 1 MKSVICAIALLVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGVWDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTY-FQLPDPVFNNPRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQIQVGHISPFGDGQG 213
BLAST of NO26G01720 vs. NCBI_GenBank
Match: EWM28183.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 193.0 bits (489), Expect = 9.500e-46 Identity = 110/208 (52.88%), Postives = 141/208 (67.79%), Query Frame = 0 Query: 5 AFACLASLMGASAFVAPAPKQMRSRGMAR-----MAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKG 208 A L L A+AF+ PA AR +V DLIGAD ETGGI+DPL S++ L K+R ELKHGR+AM +LGI++Q HLPDPVFSNPRPLAAL QV +RP A+ Q++ + IE G+Q E++APGDL FG+ F P+ E+E+ LQLKELKNGRLAM+ASMG L+QE +TGQG EQ+ +G++ GDG+G Sbjct: 4 AVVLLGLLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGL-YHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDL-NFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQG 208
BLAST of NO26G01720 vs. NCBI_GenBank
Match: EWM25765.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 182.6 bits (462), Expect = 1.300e-42 Identity = 106/208 (50.96%), Postives = 144/208 (69.23%), Query Frame = 0 Query: 4 AAFACLASLMGASAFVAPAPKQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERP-LALVQLLAAITWIELVAGKQ-SENQAPGDLAKFGNQFKP--EDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKG 208 +A + SL ASAFV APK R+RGM RMAV+D++G+DVETGG++DPLNFSKD L ++RAVELKHGR+AML VLG+W+ P++ ++ ++ E P A +Q+LA I IEL GKQ +EN+APGDL FG F P D E++A LQLKELKNGRLAM+ + G+L+QE +TGQ +EQ+++ ++ GDG+G Sbjct: 3 SAMVLVGSLAVASAFVPAAPKMSRTRGMTRMAVNDILGSDVETGGVWDPLNFSKDEGSLYRYRAVELKHGRLAMLAVLGLWVS----EFYHPLYDG--KISPGIKAIGELPGPAWLQILATIGVIELTVGKQDTENKAPGDLG-FGYNFNPFKNDPEKFAELQLKELKNGRLAMLGAAGILLQESITGQTCFEQIAAQHLSPFGDGQG 203
BLAST of NO26G01720 vs. NCBI_GenBank
Match: XP_005853581.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU22777.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 182.2 bits (461), Expect = 1.700e-42 Identity = 105/195 (53.85%), Postives = 132/195 (67.69%), Query Frame = 0 Query: 5 AFACLASLMGASAFVAPAPKQMRSRGMAR-----MAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQL 195 A L L A+AF+ PA AR +V DLIGAD ETGGI+DPL S++ L K+R ELKHGR+AM +LGI++Q HLPDPVFSNPRPLAAL QV +RP A+ Q++ + IE G+Q E++APGDL FG+ F P+ E+E+ LQLKELKNGRLAM+ASMG L+QE +TGQG EQ+ Sbjct: 4 AVVLLGLLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGL-YHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDL-NFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQV 195
BLAST of NO26G01720 vs. NCBI_GenBank
Match: CEM23802.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 166.4 bits (420), Expect = 9.600e-38 Identity = 102/191 (53.40%), Postives = 128/191 (67.02%), Query Frame = 0 Query: 4 AAFACLASLMGASAFVAPAPKQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVF-SNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQSENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQ 194 AAF A L +A PA +R+R +MAV+DL+G VE +FDPLN K+ L K+RA+ELKHGR+AML LG IQ L LPDP+F S PL +V+V ERP AL+Q+LAA+ IEL G+QS APGDL FG +F PEDEE+Y LQLKELKNGRLAMIA G++VQEL+ G + ++ Sbjct: 48 AAFVPTAPLRTPAASRQPA---LRARQTPQMAVEDLVGVSVEIPFVFDPLNLGKE-QNLYKYRAIELKHGRLAMLAALGYIIQQTPLRLPDPLFLSEDLPLKQVVKVWQERPEALLQILAAVVAIELGPGRQSLENAPGDLG-FGARFIPEDEEDYEKLQLKELKNGRLAMIAITGMIVQELLFGTNLLKE 233
BLAST of NO26G01720 vs. NCBI_GenBank
Match: CEM02552.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 166.0 bits (419), Expect = 1.200e-37 Identity = 109/215 (50.70%), Postives = 134/215 (62.33%), Query Frame = 0 Query: 1 MKFAAFACLASLMGASAFVAPAP------KQMRSRGMARMAVDDLIGADVETGGIFDPLNFSKDADKLDKFRAVELKHGRIAMLGVLGIWIQAAGLHLPDPVFSNPRPLAALVQVSTERPLALVQLLAAITWIELVAGKQS-ENQAPGDLAKFGNQFKPEDEEEYAALQLKELKNGRLAMIASMGLLVQELVTGQGIWEQLSSGNVWAIGDGKGL 209 MK FA L + ASAFV AP Q R R RMAV+D+IGADVET G++DPL FSKD L ++RAVELKHGR+AML VLG ++ L P++ + L +S +Q+LA I IEL GKQ EN+APGDL N F+ D E+A LQLKE+KNGRLAMIA G+LVQELVTGQ +QL G++ GDG+GL Sbjct: 2 MKLMVFAAL--IAAASAFVPSAPLRGLDKLQSRDRTAPRMAVEDMIGADVETRGVWDPLGFSKDESSLYRYRAVELKHGRVAMLAVLGYFV----AELWHPLYDG-KVEPGLKAISQVPSAGWLQILATIAAIELSIGKQDFENRAPGDLGFGINPFE-NDPVEFAKLQLKEIKNGRLAMIAIAGMLVQELVTGQTTLQQLREGHISPFGDGQGL 208 The following BLAST results are available for this feature:
BLAST of NO26G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G01720 ID=NO26G01720|Name=NO26G01720|organism=Nannochloropsis oceanica|type=gene|length=2839bpback to top protein sequence of NO26G01720.1 >NO26G01720.1-protein ID=NO26G01720.1-protein|Name=NO26G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bpback to top Synonyms
Publications
|