NO26G01650, NO26G01650 (gene) Nannochloropsis oceanica

Overview
NameNO26G01650
Unique NameNO26G01650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1338
Alignment locationchr26:544241..545578 +

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Properties
Property NameValue
DescriptionR-snare vamp72-family
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:544241..545578 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of NO26G01650 vs. NCBI_GenBank
Match: EWM23191.1 (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 4.800e-37
Identity = 94/203 (46.31%), Postives = 129/203 (63.55%), Query Frame = 0
Query:    9 TAIHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAATHPTLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGER--ERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWR 210
            T I +LGV+R+ DR +LSSY    +SSSF PSLL  LAA +P      RQ++E  D + H  +DD GLLYAC++ K+YPSR+IF LLEE +++F + H   ++ + E    +  G F+KQDK WL+ L  KY+E A VD+L ++ +KV+ T G MQ+SIATLL++D                  AF RRTSALR+ +QWEA R
Sbjct:    7 TEIFVLGVVRVIDRKLLSSY----SSSSFHPSLLVSLAAAYPAFEANLRQSKECSDSNFHSLVDDGGLLYACLSAKNYPSRLIFTLLEEIQENFVAHHTREQIDKAEEGGSKENGQFSKQDKSWLQGLAKKYREAACVDKLQSIQKKVDATCGTMQDSIATLLESDXXXXXXXXXXXXXXXXXXAFHRRTSALRSRVQWEAIR 205          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: CBN77436.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE), Vesicle-associated membrane protein [Ectocarpus siliculosus])

HSP 1 Score: 125.2 bits (313), Expect = 2.500e-25
Identity = 74/201 (36.82%), Postives = 117/201 (58.21%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAATHPT-LRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRL 211
            I  LGV+R +DR +++ Y+PS    S    +++EL +   T + P KR + EG   SIHF  DD   +Y+CVTDK YP+R+ F LLEE +  F +     KV +      +G  ++  K    +L  KY +   VD + AV +KV+V +  MQ++I  +L N+E+L  +++  E+L  QAK FQ R+SALR  ++ +A ++
Sbjct:    5 ITFLGVIRFTDRVLVAGYSPSEADDSL---IIKELMSNPDTFVEPRKRYSVEGRMFSIHFVADDSNRIYSCVTDKEYPARIAFTLLEEAQTKFLT-----KVGDKSLTAKEGGLSRTMKSSFSDLCIKYDDIRNVDRMAAVQDKVDVVKVTMQDNIQQMLANEERLDQISENAENLNEQAKVFQNRSSALRRQMRCKAIKM 197          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: XP_008608245.1 (hypothetical protein SDRG_04350 [Saprolegnia diclina VS20] >EQC38653.1 hypothetical protein SDRG_04350 [Saprolegnia diclina VS20])

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-12
Identity = 58/207 (28.02%), Postives = 99/207 (47.83%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAAT--HPT----LRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRLS 212
            +  L V R SD+ +++SYA +       P  L  L      PT    + P  R T +      HF +D+  ++Y  +T   YP R+ F LL   +++   +H A K+P  +    +G   K+  K L  +   Y +   VD+L  V  +V+  +  MQE+I  +L N EK++ + Q +  L+ QAK F+    +L   + W+  +L+
Sbjct:    8 VKFLAVARGSDKAIIASYAHTKKDKEESPKYLDMLTKVLRAPTWKQQVAPNSRHTLDCEPNKFHFTMDNDEIVYVAITAADYPVRLAFKLLAAVQEEMTGKH-AAKLPTVK----EGGLDKECAKGLSVIATTYDDRTKVDKLAEVMAQVDAVKSTMQENIQVVLSNTEKMEMVEQKSNDLSEQAKVFRNTGKSLSRAMWWKNVKLT 209          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: OEU20563.1 (synaptobrevin-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-11
Identity = 54/187 (28.88%), Postives = 98/187 (52.41%), Query Frame = 0
Query:   27 SYAPSATS--SSFPPSLLRELAATHPTLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRLS 212
            SYA +     S+ PPS L +      TL  +K    +     I +  D  GL  A +T   YPSRV   +L +    F+++H      +  +   +   +K+ KK L++   K+ +P++VD+   V  +V+  +G MQ++IA++L+N EK   +A  +E L  QA  F++R++ L+  +QW+  +++
Sbjct:   49 SYAAAVAGVVSNDPPSGLSQPG----TLGGFK--VVQSDQHQIVYGADVDGLCVATITGTQYPSRVAITMLTDLYTTFSAKHG-----DAAKTAAENSLSKKAKKVLEDSCKKFADPSSVDKAQQVLGQVDAVKGQMQDNIASMLKNTEKADDMAAKSEQLNEQASVFKKRSTDLKKQMQWKNLKMT 224          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: EWM27266.1 (r-snare vamp72-family [Nannochloropsis gaditana])

HSP 1 Score: 77.8 bits (190), Expect = 4.500e-11
Identity = 56/202 (27.72%), Postives = 101/202 (50.00%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAATHPTLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASR--HNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRL 211
            IH LGV R  DR +++S+A +         +   L +   ++RP    +      S H   D +G ++  +++++YP R   A LEE ++ F ++    +L+V E   ++  G       + L++L  KY   A VD+L AV  KV+  + ++QE++   L N   L ++ +A E L  QA  F+R  + L+  + W+  R+
Sbjct:   10 IHFLGVARFQDRAIVASHAYNTVIDL--TGVKEVLKSDQLSVRPGVHFSFASGGSSWHLMSDVEGRIFILISERTYPVRAAHACLEEFQRSFLAKTGTKSLEVKEKGLDKSSG-------EMLRKLCEKYDNLAEVDKLAAVMNKVDAVKLVLQENVQVALANCVALDNIEKAAEDLQAQAGMFKRNATTLKKQMCWKQLRM 202          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: OQR99240.1 (hypothetical protein ACHHYP_07153 [Achlya hypogyna])

HSP 1 Score: 77.4 bits (189), Expect = 5.900e-11
Identity = 55/207 (26.57%), Postives = 96/207 (46.38%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAAT--HPT----LRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRLS 212
            +  L V R  D+T+++SYA +       P  L  L      PT    + P  R T +      HF +D+  ++Y  +T   YP R+ F L+   ++D A++  A   P  E    + V      K    +   Y +   VD++  V  +V+  +  MQE+I  +L N EK++++ Q +  L+ QAK F+    +L   + W+  +L+
Sbjct:    8 VKFLAVARAGDKTIVASYAHTKKDKEETPKYLDMLGKVLKAPTWKQQVTPNSRHTLDCEPNKFHFTMDNDEIVYCAITAADYPIRLAFKLITAVQEDVAAKFAAKIGPAKEASLDKDV-----AKSFGTIATTYDDRTKVDKIAEVMAQVDAVKSTMQENIQVVLSNTEKMETVEQKSNDLSEQAKVFRNTGKSLSRAMWWKNLKLT 209          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: OQR95953.1 (hypothetical protein THRCLA_07440 [Thraustotheca clavata])

HSP 1 Score: 73.9 bits (180), Expect = 6.500e-10
Identity = 51/207 (24.64%), Postives = 100/207 (48.31%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAAT--HPT----LRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRLS 212
            +  + + R +D+ +++SYA +       P  +  L      PT    + P  + T +      HF LD+  L+Y  +T   YP R+ F L+   +++  S++ A K+    ++ G     K   K L  +  +Y +   VD++  V  +V+  +  MQE+I  +L N EK++++ Q +  L+ QAK F+    +L   + W+  +++
Sbjct:  522 VKFIAIARAADKVIIASYAHTKKDKEDAPKYVEMLTKVLRAPTWKQQVTPNSKHTLDCEPNKFHFTLDNDELVYCAITAADYPIRLAFKLIAAVQEEITSKY-ASKIMTA-KDNG---LDKDCAKSLSVIATQYDDRTKVDKIAEVMAQVDAVKSTMQENIQVVLSNTEKMETVEQKSNDLSEQAKVFRNTGKSLSRAMYWKNLKMT 723          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: CCA17529.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 72.8 bits (177), Expect = 1.500e-9
Identity = 58/214 (27.10%), Postives = 103/214 (48.13%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSS------------FPPSLLRELAATHPT-LRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWEAWRLS 212
            I  +GV R +D+ ++  Y  SA +S+                +LR  A T  T + P  R + +      HF + +  L++A +T KSYP R+ F L++  +Q+F  +     +    RE G     K+ K  ++ L  +Y +   VD++  V  +V+  + +M  +I  +L N EK++ + Q T  L+ QAK F+     LR  + W+  +L+
Sbjct:   43 IKFIGVARATDKAIICCYFHSAKASTNVDLAECAKWKEMYAKVLR--APTWKTQVTPNARHSLDCDPNKFHFSMSNDELVFAVITVKSYPIRLAFQLIQTLQQEFVPKFATKAL--NCREHG---LDKECKSMMQTLANQYDDRTKVDKISEVLHQVDNVKSVMHTNIQVVLSNTEKMEVVEQKTNDLSEQAKVFRNSGRKLRKAMWWKNVKLT 249          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: XP_020072385.1 (snare-like protein [Cyberlindnera jadinii NRRL Y-1542] >ODV75346.1 snare-like protein [Cyberlindnera jadinii NRRL Y-1542])

HSP 1 Score: 72.4 bits (176), Expect = 1.900e-9
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 0
Query:   54 PYKRQT-EEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRR 196
            P KRQ+ EEG     H +   +GL    +TDK YP R  F LL +   D+ + H  ++         +  FA+     L   + KY++P+  D +  V ++++ T+ ++ ++I ++L+  EKL SL   +ESL+  +K F ++
Sbjct:   54 PGKRQSVEEGEKYIAHAYARSEGLCAILITDKEYPVRPAFTLLNKVIDDYITEHPPIEWKNATEANSKFGFAQ-----LANYIKKYQDPSQADSIMRVQQELDETKVVLHKTIESVLERGEKLDSLVDKSESLSASSKMFYKQ 191          
BLAST of NO26G01650 vs. NCBI_GenBank
Match: XP_005711800.1 (VAMP7a [Chondrus crispus] >CDF32135.1 VAMP7a [Chondrus crispus])

HSP 1 Score: 71.2 bits (173), Expect = 4.200e-9
Identity = 57/200 (28.50%), Postives = 95/200 (47.50%), Query Frame = 0
Query:   11 IHLLGVLRLSDRTVLSSYAPSATSSSFPPSLL---RELAATHPTLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQDF-ASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAVSEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALRANLQWE 207
            I  + V RL+DR  ++ YA +  S   P  LL    E       +  + R T    +V    +  D   LY  V  + Y  R  F  L E R++F AS  N ++         Q   ++  K+ L+ L  KY     VD++ AVS +VE  +G+MQ +I  +L+N E +++L   T+++ ++A  FQR  +  +  + W+
Sbjct:    7 IRYVAVARLTDRVPVAEYA-AIDSREVPTKLLDEKLEKVLRSGRVEEHTRLTITDREVGSIHYDSDPVCLYLVVCAREYQQRNAFKFLGEVRREFDASFGNDVQTAR------QSGLSRPAKELLRSLCEKYNSVQNVDKVAAVSLQVEEVKGVMQNNIQNVLRNQENIETLLDQTDTMKNEATGFQRSANRAKDKMWWK 199          
The following BLAST results are available for this feature:
BLAST of NO26G01650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23191.14.800e-3746.31r-snare vamp72-family [Nannochloropsis gaditana][more]
CBN77436.12.500e-2536.82Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
XP_008608245.12.400e-1228.02hypothetical protein SDRG_04350 [Saprolegnia dicli... [more]
OEU20563.12.000e-1128.88synaptobrevin-domain-containing protein [Fragilari... [more]
EWM27266.14.500e-1127.72r-snare vamp72-family [Nannochloropsis gaditana][more]
OQR99240.15.900e-1126.57hypothetical protein ACHHYP_07153 [Achlya hypogyna... [more]
OQR95953.16.500e-1024.64hypothetical protein THRCLA_07440 [Thraustotheca c... [more]
CCA17529.11.500e-927.10conserved hypothetical protein [Albugo laibachii N... [more]
XP_020072385.11.900e-929.37snare-like protein [Cyberlindnera jadinii NRRL Y-1... [more]
XP_005711800.14.200e-928.50VAMP7a [Chondrus crispus] >CDF32135.1 VAMP7a [Chon... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01650.1NO26G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600872gene_8002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01650.1NO26G01650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01650 ID=NO26G01650|Name=NO26G01650|organism=Nannochloropsis oceanica|type=gene|length=1338bp
ATGAGTGCCACCAACACTATCACCACGGCTATCCATCTTTTGGGTGTTCT
CCGCCTCTCCGACCGCACCGTCCTCTCTTCCTACGCCCCCTCCGCCACCT
CTTCCTCCTTCCCTCCCTCCCTCCTTCGAGAGCTTGCTGCCACACACCCC
ACACTCAGACCCTATAAGCGTCAAACGGAGGAAGGGCCCGATGTATCTAT
CCATTTCTTCCTCGATGATCAAGGCTTATTGTATGCATGTGTCACGGATA
AGAGCTACCCAAGCCGTGTGATATTTGCGTTACTGGAGGAGACACGCCAG
GACTTCGCCTCTCGTCACAATGCACTTAAAGTGCCCGAAGGAGAGCGAGA
ACGAGGACAAGGGGTTTTCGCCAAACAGGACAAAAAATGGCTGAAGGAGT
TGGTTGGAAAGTACAAGGAGCCGGCGACGGTGGATGAACTGTATGCTGTT
TCCGAAAAGgtgaagggagggagggcgagagggcgagagggcgagagggc
gggagggagggagggaggagagagggcgggagggagggagggagggaggg
agggagggagggagagaggcaaaacggacagctattcccatgaacttttg
acagttcacttattgtaacggctatgtcgtctctcttttcgtccacctgc
atcatatccacgcgcctcatagtgtgtttttccctctttccatccgtcca
tccacatgaatctccaacagGTGGAAGTGACGCGTGGCATCATGCAAGAG
TCTATCGCCACTCTCCTGCAGAACGACGgtgcgttttctccctttctctt
tccttccctccctccgtccttcagaaaagctgcagtcccaggcccaagcc
accgaatctctgacgcaccaagcgaagactgttcaatgttgtctctctga
ccaaacccccctccctccctccttccctccctccctcctcccctccctag
aaaagctgcagtcccaggcccaagccaccgaatctctgacgcaccaagcg
aagactgttcaatgttgtctctctgaccaaacccccctccctccctcctt
ccctccctccctccctccctcctccgaaccctagAAAAGCTGCAGTCCCT
GGCCCAAGCCACCGAATCTCTGACGCACCAAGCGAAGGCTTTCCAACGTC
GCACGTCTGCGCTTCGCGCAAATTTACAGTGGGAGGCCTGGCGgtaagcg
accccttcctccctcccttcctccctcccttcctccctcccttcctccct
cccttcctccctcccttcctccctcccttccttcctcccttcctccctcc
cttcctccctcccttccctcccttacagCTTGAGTTAA
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protein sequence of NO26G01650.1

>NO26G01650.1-protein ID=NO26G01650.1-protein|Name=NO26G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MSATNTITTAIHLLGVLRLSDRTVLSSYAPSATSSSFPPSLLRELAATHP
TLRPYKRQTEEGPDVSIHFFLDDQGLLYACVTDKSYPSRVIFALLEETRQ
DFASRHNALKVPEGERERGQGVFAKQDKKWLKELVGKYKEPATVDELYAV
SEKVEVTRGIMQESIATLLQNDEKLQSLAQATESLTHQAKAFQRRTSALR
ANLQWEAWRLS*
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Synonyms
Publications