NO26G01640, NO26G01640 (gene) Nannochloropsis oceanica

Overview
NameNO26G01640
Unique NameNO26G01640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1860
Alignment locationchr26:541224..543083 +

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Properties
Property NameValue
DescriptionThioredoxin domain-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:541224..543083 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0055114oxidation-reduction process
GO:0045454cell redox homeostasis
GO:0006662glycerol ether metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
BLAST of NO26G01640 vs. NCBI_GenBank
Match: CEL95477.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 177.6 bits (449), Expect = 6.300e-41
Identity = 89/180 (49.44%), Postives = 124/180 (68.89%), Query Frame = 0
Query:  140 AANAMERMKKELAQ----EKRQKIITAVGSVLGAVALFFYQHTHPVEA--ITILRKMQSESPTIQ-MVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRALPYEGYDAFEDD 313
            AA A ER ++   +    E+R+ +  A+GS LG   L+  Q  +P+ A  + ILR+M+ +SP +   +  NGRPTV+DFYA WCENCK MAP +R +E +Y  +VNFV +DG   D +S  LV+RFRVD IPH+AL++  GE+ TALIG +PK+VL+AD D+L++ R LPY GYDAF+ D
Sbjct:   14 AAAAREREREAAVEALNVERRENMRVALGSGLGGALLYGGQRLNPLRADPLVILREMERDSPPVDAQLFTNGRPTVIDFYAPWCENCKTMAPSMRTIEKEYSGRVNFVTVDGSRSDTSSQRLVQRFRVDAIPHIALVSARGEILTALIGLIPKEVLKADFDALLSDRPLPYIGYDAFDGD 193          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: CBN79979.1 (thioredoxin-like protein [Ectocarpus siliculosus])

HSP 1 Score: 174.5 bits (441), Expect = 5.300e-40
Identity = 83/165 (50.30%), Postives = 117/165 (70.91%), Query Frame = 0
Query:  154 EKRQKIITAVGSVLGAVALFFYQHT--HPVEA--ITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRALPYEGYDAFEDDNH 315
            EK +    A GS L AV LFF+QH    P +A  + +LR M++ S  +   + NG+PTVVDFYA+WCENCK MAP +R +E ++K+++NFVV+DG    + +  LV+ FRVDGIPHLA++   GEV+TA+IG VPK V+  DI +L+AGR LP++G+D FE ++H
Sbjct:  106 EKARNTKIAFGSFLSAVGLFFFQHAAIAPAQANPVVLLRAMETSSAPLATALTNGKPTVVDFYADWCENCKAMAPSMREIEEQFKNQINFVVVDGSA--EKNYDLVDAFRVDGIPHLAMVNGNGEVETAIIGAVPKDVVVDDIKALLAGRPLPFKGFDMFEGEDH 268          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: XP_002179599.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48585.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 157.9 bits (398), Expect = 5.200e-35
Identity = 77/156 (49.36%), Postives = 110/156 (70.51%), Query Frame = 0
Query:  152 AQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLI--AGRALPYEG 306
            A  +R+ +  AVGS+  A+A F +Q  HP+E + +L  MQ+ESP + ++  NG+PTVVDF+A WCENCK +AP L  +E +Y DKVNFV+++ D R+  S   ++ F VD IPHLAL++  G+V+TALIG +PK+VL AD+D L+  A RA P +G
Sbjct:  171 ASLRRRNLNVAVGSIALALANFAWQFFHPIEPVQLLMSMQAESPPLSVIGKNGKPTVVDFWAPWCENCKLIAPTLLQIEQEYGDKVNFVMVNADKREAWS--FIDAFGVDAIPHLALVSANGDVETALIGPIPKRVLRADLDVLLENAARASPADG 324          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: EJK71830.1 (hypothetical protein THAOC_06690 [Thalassiosira oceanica])

HSP 1 Score: 151.4 bits (381), Expect = 4.800e-33
Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 0
Query:  151 LAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGD-GRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRA-----------------LPYEGYDAF 310
            L Q + + I  AV S   A+  + +Q +HPV AI+IL  MQS S +I+ +  NG+PTV+DF+A WCENCK  AP L+AVE  Y D+VNF++++ D GR+     L++ F VD IPHLAL++ EG+V+TALIG   + VL+ADID+L+  +A                 LPY+ YDAF
Sbjct:   94 LKQNRMRNIAVAVASFSVAIFNYGWQLSHPVSAISILASMQSSSQSIETIGNNGKPTVIDFWAPWCENCKVAAPTLQAVEKDYGDRVNFIMVNADEGRNWP---LIQLFGVDAIPHLALLSGEGDVETALIGPTSRTVLKADIDALLNKKADCDAAVAEAKQPVCHDDLPYKMYDAF 267          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: GAX17050.1 (hypothetical protein FisN_5Hh435 [Fistulifera solaris])

HSP 1 Score: 150.2 bits (378), Expect = 1.100e-32
Identity = 67/154 (43.51%), Postives = 105/154 (68.18%), Query Frame = 0
Query:  148 KKELAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRAL 302
            K ++ Q +++ ++ A+ ++  A+  + +Q THPV  +++L +M  ES   Q++  N +PT+VDF+A WCENC+ MAP LRA+  +YKD++NFV I+ D  D+    L+  F VD IPHLAL+  +G+V+TALIG VPK +L AD+D L+   A+
Sbjct:   44 KPDVTQFRQRNVVVAIVAIALAIGQYAWQFTHPVTPVSLLMQMTQESSAPQIIGTNNKPTLVDFWAPWCENCRIMAPTLRALHEEYKDQINFVTINADATDRNPWPLINAFGVDAIPHLALVNAQGDVETALIGLVPKSILSADLDVLLRNAAI 197          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: GAX25342.1 (hypothetical protein FisN_5Lh435 [Fistulifera solaris])

HSP 1 Score: 149.8 bits (377), Expect = 1.400e-32
Identity = 68/154 (44.16%), Postives = 104/154 (67.53%), Query Frame = 0
Query:  148 KKELAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRAL 302
            K  + Q +++ ++ A+ ++  A+  + +Q THPV  +++L +M  ES   Q++  N +PT+VDF+A WCENC+ MAP LRA+  +YKD++NFV I+ D  D+    L+  F VD IPHLAL+  +G+V+TALIG VPK +L AD+D L+   AL
Sbjct:    8 KPNVTQFRQRNLVVAIMAIALAIGQYAWQFTHPVTPVSLLMQMTQESSAPQIIGTNNKPTLVDFWAPWCENCRIMAPTLRALHEEYKDQINFVTINADATDRNPWPLINAFGVDAIPHLALVNAQGDVETALIGLVPKSILSADLDVLLRNAAL 161          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: OSX73179.1 (hypothetical protein BU14_0371s0013 [Porphyra umbilicalis])

HSP 1 Score: 133.3 bits (334), Expect = 1.400e-27
Identity = 69/169 (40.83%), Postives = 105/169 (62.13%), Query Frame = 0
Query:  139 DAANAMERMKKELAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRALPYEGYD 308
            DAA A ER         R + +  +G  +GA AL+F    +PV  +TIL ++ + SPT + V  + RPTV++FYA+WC  C++ A  L  +E++Y   VNFV++  D  ++A+A LV+++ VDGIP L L+   G V T  IG VPK++L  DID++++G+ LP  G D
Sbjct:   53 DAALAKER--------TRDRTLAVIGPAIGA-ALYFLVAANPVSPLTILHQLDASSPTPEAVAASNRPTVMEFYADWCAACRDGAAGLSLLEARYAPDVNFVLV--DAANEANAALVDKWGVDGIPRLVLLDRRGAVLTNFIGGVPKEILAEDIDAMLSGKPLPNLGLD 210          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: XP_002289795.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED93332.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 127.1 bits (318), Expect = 9.800e-26
Identity = 60/108 (55.56%), Postives = 83/108 (76.85%), Query Frame = 0
Query:  190 MQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGD-GRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLI 297
            MQS+S  +  +  NG+PTV+DF+A WC NCK  AP L+AVE +Y D+VNF++++GD GR+     L+E F VD IPHLAL++ EG+V+TALIG + K+VLEADID+L+
Sbjct:    1 MQSQSAPLTAIGNNGKPTVIDFWAPWCSNCKVAAPTLQAVEKEYGDRVNFIMVNGDEGRNWP---LIELFGVDAIPHLALVSGEGDVETALIGPMSKRVLEADIDALL 105          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: WP_007357669.1 (MULTISPECIES: thiol:disulfide interchange protein [Kamptonema] >CBN58492.1 thioredoxin domain-containing protein [[Oscillatoria] sp. PCC 6506])

HSP 1 Score: 114.4 bits (285), Expect = 6.500e-22
Identity = 55/161 (34.16%), Postives = 93/161 (57.76%), Query Frame = 0
Query:  143 AMERMKKELAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRALPY 304
            A ++++   A+  R  +I      LG       Q   P  A+T   +M   S  +++ V NG+PT+V+FYA WC +C+ MA  +  V+ KY D++NF +++ D         V ++RVDGIPH   +++ GE     IG+ P+ ++E+++++LIAG+ALPY
Sbjct:   13 ASQKLESNTAKRLRNLLIVLAAIALGISLFLGLQIETPSNALT---EMAEASTPLEVAVSNGKPTLVEFYANWCGSCQAMAKDMSEVKEKYSDRINFAMLNVDNNKWLPE--VLKYRVDGIPHFVFLSDRGEAIAQTIGEAPRNIMESNLEALIAGKALPY 168          
BLAST of NO26G01640 vs. NCBI_GenBank
Match: WP_026100163.1 (thiol:disulfide interchange protein [Fortiea contorta])

HSP 1 Score: 112.1 bits (279), Expect = 3.300e-21
Identity = 60/163 (36.81%), Postives = 94/163 (57.67%), Query Frame = 0
Query:  141 ANAMERMKKELAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMVVGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQASAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRALPY 304
            AN+  + +       R  +I  V   LGA ALF    T    A   L K+   +  +++ V NG+P++V+FYA+WC  C++MAP +  +E +Y DKVNFV+++ D        L  ++RVDGIPH   ++ +GE     IG  P+ V+ +++D+LIAG +LPY
Sbjct:    7 ANSPTQTEITTGTRVRNFLIAIVAIALGA-ALFLGLRTETTSA--SLSKLSEAATPLEVAVSNGKPSLVEFYADWCAVCQKMAPDIAQIEQQYADKVNFVMLNVDNTKWLPEML--KYRVDGIPHFVFLSKDGESLAQTIGDQPRAVMSSNLDALIAGDSLPY 164          
The following BLAST results are available for this feature:
BLAST of NO26G01640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CEL95477.16.300e-4149.44unnamed protein product [Vitrella brassicaformis C... [more]
CBN79979.15.300e-4050.30thioredoxin-like protein [Ectocarpus siliculosus][more]
XP_002179599.15.200e-3549.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK71830.14.800e-3345.76hypothetical protein THAOC_06690 [Thalassiosira oc... [more]
GAX17050.11.100e-3243.51hypothetical protein FisN_5Hh435 [Fistulifera sola... [more]
GAX25342.11.400e-3244.16hypothetical protein FisN_5Lh435 [Fistulifera sola... [more]
OSX73179.11.400e-2740.83hypothetical protein BU14_0371s0013 [Porphyra umbi... [more]
XP_002289795.19.800e-2655.56predicted protein, partial [Thalassiosira pseudona... [more]
WP_007357669.16.500e-2234.16MULTISPECIES: thiol:disulfide interchange protein ... [more]
WP_026100163.13.300e-2136.81thiol:disulfide interchange protein [Fortiea conto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01640.1NO26G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600869gene_8001Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01640.1NO26G01640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01640 ID=NO26G01640|Name=NO26G01640|organism=Nannochloropsis oceanica|type=gene|length=1860bp
ATGATCATCCGATCGAGACGAAGGCCACGGCGACAACAGCAACAACAACA
ACATCTACAACAAGGACAGCAACCACACTACTCCATTCTCCTCCTCTCCC
TCGTCCTCCTCGCTTGCCAAGTCTCCTCCTTCGTCCTCCCCTTCCCCGCC
CTTCCCTCCCCCTCCTCCTCAAGAAGAACAGCCTCTACATCCTCCCCTCG
CCCTCCCTCCTCCTCGACCTTGCCCCTCACCAGCGTCACAATCAGGAGGA
ATAGAATAGGAGATGGCCGTCGACCCTCATCATGCATTTCACGAGGCCTA
CCTCAAGCCATGTTCGGGACCGCGGAAGGGGGGGATGCTGGGACGGAGGA
AGACCGACGAGCCGAAGGAGCACGAAGATTGGCGGCGGAGCTGGAAAAGG
AGAGGGTGCAAGTGGACGCCGCGAATGCCATGGAGAGAATGAAGAAGgta
ggtgggtaaggagtagaagggagggagggagttgcacctgctgctgctgt
tcctgcacatttcttcatgatcttgtccgcgcctgtctgccgccttaccc
ctccctccctccctccctccctccctccctccttctcttttcagGAACTT
GCCCAAGAGAAAAGGCAGAAAATCATCACGGCGGTGGGTTCTGTCCTAGG
TGCGGTCGCCCTTTTCTTCTACCAGCATACACACCCAGgcacgtctccct
ctttgcctcccttcctccctccctccctccctacttatcccccttccgtc
ctccttcttcatcgtgtcagcttcggcaagactgacatctccctccaaaa
aacccacccatttcttccctccctccctccctccctccctccctcactct
cttcctccctcccttcctctttccctcagTGGAGGCCATTACTATTCTAA
GAAAAATGCAGTCGGAAAGTCCCACCATCCAGATGGTCGTTGGAAACGGC
CGACCAACCGTTGTGGATTTTTATGCCGAGTGGTGCGAAAACTGCAAGGA
GATGGCTCCCGTGCTTCGGGCCGTCGAGAGCAAGgtgagggggaattagg
aagatacggatgcaccgagggatggagggacgtgtgttttccgttgccgt
taacgacccaccaaccgttgagtatctgggggtgaatccgtcgatgccga
ggatgaggaaatggattccgtccgtcttgagagcggtggaaggaaacaag
gaaacgaaagcgctgttcttctctccctccctcccttcttcccccaacct
ctaatttaattctggaacacgcgtttcacatttcccggtctcgccctccc
tccctccctccctccctccctccttcctccctccctccctccctcagTAC
AAGGACAAAGTAAACTTCGTGGTCATCGACGGGGATGGCCGCGATCAGGC
TTCTGCCGGCCTAGTAGAACGGTTTCGAGTCGATGGCATCCCCCATCTCG
CCCTCATGACAAATGAGGGGGAGGTCAAGACCGCCCTGATAGgtgcgtgt
ctttccctccctctctcccttcctccctccctccctccctccctccttcc
ctttctactgactttgcaaaggcgccatttcggagaaatggaagatcaga
tgccggcacccattccagccttccctccctaacttgtttctacctccctt
ctttttcttccctaccctccttcgccctttcccgcctgctcatccctctc
cccctccccttcccttcccccctcccctctctccctcttctcagGCAAGG
TCCCAAAGAAGGTTCTAGAAGCGGACATTGATTCGTTGATAGCCGGGCGT
GCCCTCCCTTATGAAGGCTACGATGCCTTCGAGGACGACAATCACTTTGT
CACCTTTTGA
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protein sequence of NO26G01640.1

>NO26G01640.1-protein ID=NO26G01640.1-protein|Name=NO26G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MIIRSRRRPRRQQQQQQHLQQGQQPHYSILLLSLVLLACQVSSFVLPFPA
LPSPSSSRRTASTSSPRPPSSSTLPLTSVTIRRNRIGDGRRPSSCISRGL
PQAMFGTAEGGDAGTEEDRRAEGARRLAAELEKERVQVDAANAMERMKKE
LAQEKRQKIITAVGSVLGAVALFFYQHTHPVEAITILRKMQSESPTIQMV
VGNGRPTVVDFYAEWCENCKEMAPVLRAVESKYKDKVNFVVIDGDGRDQA
SAGLVERFRVDGIPHLALMTNEGEVKTALIGKVPKKVLEADIDSLIAGRA
LPYEGYDAFEDDNHFVTF*
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Synonyms
Publications