NO26G01620, NO26G01620 (gene) Nannochloropsis oceanica

Overview
NameNO26G01620
Unique NameNO26G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4344
Alignment locationchr26:531945..536288 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:531945..536288 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO26G01620 vs. NCBI_GenBank
Match: EWM21797.1 (hypothetical protein Naga_100065g18 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 2.900e-13
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 0
Query:  930 LLAGAKLAYRPQRFCRIPHCQIRYRSPGFLCERHGGGRCDYPDCKKLHQGKQGCKFFFFCRHHRKIW 997
            +L G+ L  R  R CR PHC  RYR+PG+LCE  GGGRC    C++LHQGKQG    FFCR HR I+
Sbjct:  346 VLPGSLLEKRRNRSCRTPHCTNRYRTPGYLCEACGGGRCQARGCERLHQGKQGLSNLFFCRAHRNIY 412          
The following BLAST results are available for this feature:
BLAST of NO26G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21797.12.900e-1356.72hypothetical protein Naga_100065g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01620.1NO26G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01620.1NO26G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01620 ID=NO26G01620|Name=NO26G01620|organism=Nannochloropsis oceanica|type=gene|length=4344bp
ATGGCCTACAACCAGAGGGTGCGCTATTCACAAGATGCAGCGGCGTTGTC
ATCGCTGGCGGCTACCTCGCTCTCTGTGCCTCTCGTTGTCTTGCAAACAA
ATCCTGCGGCGTCGGCATGCTTTGGCGCCTTGACTGGGAGGGGTAAGGCA
GGCAATAGTCCCCACGCCACAAATGCCTTACCGCGGAGCTCAAGCACCCA
CTACCACTGCCAAGAGCTGTCCGACAACGTTATTGCCGGATGGGGGAGGG
GACAGGGTAGGGTTGGCAGCGCCGATCCCCCTCCTTCCTGGGAAGCGTAT
CATCCTGCATCTGACGATATTAGCGTCGACGTCGGTGATTTGCCGCTCCA
AAGTCCTCCTCCTCCCCCCCCCCCCATGATGGCCAGCACCAGCATTAGCA
GCAGCAGCAGCAGCACTTACACCGACACTAACACCAGCCTGGACTCTTTT
CCCTCCCCCTCCCCCTCCTTGTCCTCGTCCCCATCGCCGCTTTTGTCCGT
TCCCCTGGCCGCATCTACCACCGCATCTATCACTGCTGCTTATCAGCCGC
CCCAAGCCTTTGCTGCCTCCATCGGCAACAGCACCAGCGGCTGGCTTGCT
CTTCACATTCCAGAAGgtacatgcagagataaaggcgtgtctgccccttt
ccttttttcctccctccctccctccttccttccactcctttatttcccaa
catcaagccaatctttatctttgctgccctcctgagaacgcattcgaccg
agtaggagcatcctttcgtccctccctccctccctccctccgcgcgtgca
ctcaccaaaccccatgctccctccctccctcccttcctccctctctccct
tcccatcgtagATATCTGGCCTATCTTCTTCTTTGCCGCCTCCGAGAGCG
CGCCCGAGCAGCGCGATGGGGTTGCCCGCACGTGCCTCGCGCAGCTTCTT
TCCCTCCCTCAGGAACTCGAGTATATATCCTCCCTTTCTCATCCATATCC
ATCACTCTCTCCCTCTCTCCGTCCGGAAAGGGGGATCGAGGAGGGGGGAG
GGATTGAGGAGAGGGAGGATAAAGAGGAGATGGATGACATTTTTTTGAGG
GATGAGATGGGGGGGAGGGAGAGGGTTGGGAGGGAAGTTAGAGGCGGGGA
GGAGGAGTGTGAGGAGGAGGAGACGGAGGGGTCGAAAGAGGGACAGGGGG
GGTTTGTGCATCCTTTCGTGGTGGTGTCCTCTCCTTGCCCTCCCTCCATC
TCTCCCTCCCTTCCTCGGTACCAGCAGTGTCTACAGGAGCATCAGCACCA
GCAGTGTCTACAGCAGAATCAGCAGCCGCAGCAACGGCAACAGTGTCAAC
AGCACCTTCATCATCATCATCATCATCATTACCACCAGCAGGAGGTGCAA
CAGCAGCAGAAAAAGGAGGCTCCTTTCTATTCCCCCCACTCCATCTCTCA
CCTCCCCCTCCTTTCCCATGAAAGAGAGGGAGGGAGGAAAGGAGGCCCGG
CGTGGCTGTCACTGAAGAAGCCCCGGGCGTTGCTGGCCTCCCAAATGACG
GCGCGGgtagggagggagggagtgcgggaaggacggttaccctgtttttc
tccttttgcctgtcatcgtcttctttcatttaatctccctccctccctcc
ctccctccctccctccctccctccccccctccctccctcccacctttcca
aacagTCGTTAGGACGGCTAGACTCCATCCCCGGACAAGCCACAGCTCCT
CCTTTCGTCTCTCCTTCCTCTTCCGTCTTCCCCTCTTCCTCTTCCGCCTC
CTCCTCTTCCTTTTCACCCCTCCCCTTCTACCACTCTAGGAGCAACAACA
AGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGTGGTCTTCAAGCCGCCGCC
GCTCTGGAGAAGCATACGAGGGgtagtaccttctttcctccctccttccc
gccctcctcctccccttcagcttcctccccccctctctccatgagccctt
tcctctccctcccctgagccgacaatttccctctttgttctcttctttaa
tcccttcctccctctcgccctcccccctttcccctaccgccgtgggtggg
cgtataaggggagggtccagggtagggagggaggtagggagggagggagg
gagagagggatggaaagaggaaggaaagacgaaatttgcctggccttctc
tttcgcaggagcaagAAGAAGGGCAAGAGTGGGAGGCTCAGAGGGAGAAA
GAGATAGAGGACGTTGAGGGCCTAACGGAAACCGTTACGGGTTTGGGCAA
GGGCAGTTCCTTCCCTCCCTTGTGTTCCCTCCTTCCCTCCCTCCCTACTT
CATTGCTGCCACGGACGCAGCTGGTTCAGCAAGAGGAGGAGGAGGAGTGG
TGGGGAGGGAGGGAGGGGGCGAGGGCAGGAAAGGTAGGTGCAGGGACAGC
CATTACTACCTGCAATAGCACCTGCGGTGGCAGCAGCAGCAGCAGCAGCA
GTAGCAGTAGCAGCAACGGCAGCTTCAGCAGCAACCAGAGTGATGAAGGA
GGAGGGGAAGGAGGATTAGGATCAGGAGCAGGAGGAGCAGTAACGGTTGT
GGCATACGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGAAATGGAAGAGG
AGGAGGAAGAGGAGGAGGGCGGAAAAGAGGGCGCTCTGACGTTAGCGTCG
TCGATCATGCCTCCTACGAAAAAGCAGAAGAAGATCGCTCGAGTGGAGGG
GAAAGATGAGCGGGAGAAGGAGGGGGCGAGGGGAGGGAGAAAATGCAAGA
AGAGCACCTCTGGCCCAGCCACCACCAGCATTAGCAGCAACAGCAGCAGC
AACAGCAGCAGCAACAGCAGTACGACAAACATCTCTCGCAGCCACAGCAG
CAGGCCTGGCCCAGCTCCCCTCTGTTCCCCTCCCCTCATCCCTTCTGGCC
TTCTTCCCTCCCTACGTCCTTTCCCTCTGTCGCCTTCCAACTTTCGTCTC
GTGTCGCGGCGGCCGTCGTCTTATGCGCCGGAAGAGCCACAAGAAAAGGA
GGAGGAAGAAGCGCACGGGGAGGAAGAGGAGGAGGGGCAGGGGGACGAAG
GTGAGAAAGCAGAAGAAGGAGAGAAGAATCAGGAGGGAGATGAGGAAGAG
GAGCAGGAGGGGGAGGAAAGCAGAAGGGCGGAACGAAGGAAGAGGAGGGA
GGCTCCATCGGCGTCAATACAGCAGCAGAACGACAAAGACCTCTATCAGC
AGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAC
GACAAGAAGCCACAGGGACAACAGGAAGAGAGCCTGCCCTCCTTCCCCTC
CCTTTGCAACCGCCCTCCCTCCCGCCCGCCCTCCCTCCCTCCCTCCTCAC
CGCCCTCAAAGAAAACCAACGAATGCAAGCTCGAGAATCCGTACCGGCGC
TGCCCCCTGGgtacgttcctccctccctccttccctccttccctcaaaaa
atgtccttgtcggtgaagaagacaccaagcaactcacctccctccctcgc
tcgctcgctcgctccctccctcctagGCGGCAAGGACGTTTTACTTGCAG
GTGCTAAGCTTGCCTATCGCCCCCAGCGTTTTTGTCGCATCCCCCACTGC
CAAATTCGCTACCGCTCACCCGGgtacgtcgtttccgccctccctccctc
cttccctccctccctccttcccttcctccttccctccctccctccctccc
cccatctctccccggtctccccagccttatcccctttaatttatgttcgc
tccctacacatgcccaatgcccttcttccgacccccccttctctccctcc
cttcctcttcccctggccttccctccacatcacacccacctcctaaagcc
cgtcattccgatacccacacaccccttaccattcccacaaagtgtcaaac
tagccccctccctgatccctccctccctccctccctccctacctccttcc
ttccctccctcagCTTTCTCTGTGAGCGGCACGGCGGCGGCAGGTGTGAC
TACCCTGACTGTAAAAAGCTACACCAAGGGAAGCAGGGATGCAAGTTCTT
CTTCTTCTGTCGGCATCACCGGAAGATCTGGAGAGAGGAGGGGGAGAAGG
GGAACGAAGAGAAGAGGGAGGAGGGAGGGAGGGAGGAAGGGAAGGAAAAG
GAGGAGGAGAAGGACGAGGAGAAGGACGAGGAGAAGGGGCGCGCAAGGGG
GATGAGGAGGGGAGGACGAGGAAGAGGGGTTGGAGGAGGAAGAGAAGGAC
GAGGACGAAAAGGAGGAGGAAGGAATAAGAGGCATGGAAAGTAG
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protein sequence of NO26G01620.1

>NO26G01620.1-protein ID=NO26G01620.1-protein|Name=NO26G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1067bp
MAYNQRVRYSQDAAALSSLAATSLSVPLVVLQTNPAASACFGALTGRGKA
GNSPHATNALPRSSSTHYHCQELSDNVIAGWGRGQGRVGSADPPPSWEAY
HPASDDISVDVGDLPLQSPPPPPPPMMASTSISSSSSSTYTDTNTSLDSF
PSPSPSLSSSPSPLLSVPLAASTTASITAAYQPPQAFAASIGNSTSGWLA
LHIPEDIWPIFFFAASESAPEQRDGVARTCLAQLLSLPQELEYISSLSHP
YPSLSPSLRPERGIEEGGGIEEREDKEEMDDIFLRDEMGGRERVGREVRG
GEEECEEEETEGSKEGQGGFVHPFVVVSSPCPPSISPSLPRYQQCLQEHQ
HQQCLQQNQQPQQRQQCQQHLHHHHHHHYHQQEVQQQQKKEAPFYSPHSI
SHLPLLSHEREGGRKGGPAWLSLKKPRALLASQMTARSLGRLDSIPGQAT
APPFVSPSSSVFPSSSSASSSSFSPLPFYHSRSNNKSSSSSSSSSSGLQA
AAALEKHTREEGQEWEAQREKEIEDVEGLTETVTGLGKGSSFPPLCSLLP
SLPTSLLPRTQLVQQEEEEEWWGGREGARAGKVGAGTAITTCNSTCGGSS
SSSSSSSSSNGSFSSNQSDEGGGEGGLGSGAGGAVTVVAYERGGGGGGGG
EMEEEEEEEEGGKEGALTLASSIMPPTKKQKKIARVEGKDEREKEGARGG
RKCKKSTSGPATTSISSNSSSNSSSNSSTTNISRSHSSRPGPAPLCSPPL
IPSGLLPSLRPFPLSPSNFRLVSRRPSSYAPEEPQEKEEEEAHGEEEEEG
QGDEGEKAEEGEKNQEGDEEEEQEGEESRRAERRKRREAPSASIQQQNDK
DLYQQRQQQQQQQQQQQQQQYDKKPQGQQEESLPSFPSLCNRPPSRPPSL
PPSSPPSKKTNECKLENPYRRCPLGGKDVLLAGAKLAYRPQRFCRIPHCQ
IRYRSPGFLCERHGGGRCDYPDCKKLHQGKQGCKFFFFCRHHRKIWREEG
EKGNEEKREEGGREEGKEKEEEKDEEKDEEKGRARGMRRGGRGRGVGGGR
EGRGRKGGGRNKRHGK*
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Synonyms
Publications