NO26G01440, NO26G01440 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G01440 vs. NCBI_GenBank
Match: EWM23184.1 (ppr repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 601.7 bits (1550), Expect = 4.700e-168 Identity = 370/718 (51.53%), Postives = 441/718 (61.42%), Query Frame = 0 Query: 437 FLLLLSLCKAAQDGEPGR-----------------EPAGGALDGALLILSSMVEQGKGNTLAFNMVLKMCERRRDARRALLLLSQMESLPSLPPDLVSYNTVISACARGNRPQDAQRLVKAMEQRASRSSNSSSTRGAEGGRVVPSLVTYNSLLAALAQGGQWKEAMAVLQTLRRKGLKADVITYTSLIQACSKAKPYPQVKKALFFLDEMR-----GGE---WRKGKRVEEVACARGGVGAGWGQTALGLYEEMKEEGIEAPPQVYRALVQACGNDVVPVGEEDEEEGKERKGEHKTISINRGRIDRNPKSAXXXXXXXXXXXXXXXXXXXXXXXTTAKVWNLLQSCPPAHRNNFVYTAAVKACERGRDWRMALRLLEDMKTIRLEPDDVTHGQLLHVLSSTGRWAEALQVLGSIRKRNIRHYTSAIRACGSAKEEGEAARQGRRLYMELKGEGLVPDLFVYNVVLQALRA------GSSSSSS--------------VADDALALYDEMRGKTINLGNKSSCASFSPSPLTNKG-HLP--YPPPPPVAPDIVTITVLISILEKHGRHVEALRVFSDGVRANVLMTTRLDSLWERDLSRLSYQLVRAAIDYTLRELVKEFKLQKKAAAGSKEPNVNDLVLITGVDLR-KREKGGVATGGGNSSSR------DDPETRQGLACLVLREKGLVPAEQEVGEAGILKVPAKGLREWLVKQ 1100 FLL+LSLCKAA++G GR L+L+ MVE+G GN LAFNMVLKMCERR DARRALLLL++M SLP+L PDL++YNT+ISACA+G+RP+DAQRLVK +E EGGR DVITYTSLIQACSKA+P QVKKAL++L+ M+ GGE AGWG+TAL L+EEM+E G+EAP QVYRALVQACGNDVVP G G G T + R P+ TTA+VW+LLQ+CPPAHRNNFVYTAA KACERGRDW MALRL+EDM+ + +EPDD+THGQLLHVL+S GRW EAL VL SIR+RN+RHYTSAIRACG A G AAR+G LY+ ++ EGLVPDL+VYNVVLQALRA G+ S ADDALALY+EM G N K + + S +G LP PPPPPV PDIV+ TVLISILE+HGRH +ALRVF DGVRA VLMTT LD+LWE+DLSRLS+QLVRAA+D+++ ELV +F+ Q KAAAG+K+P+V DLVLITG D+R R GG G R PETRQ LA LVL EKGL+PA++E + G+L VPA +R+WL KQ Sbjct: 27 FLLVLSLCKAAEEG-AGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVLAGMVERGHGNVLAFNMVLKMCERRGDARRALLLLAEMRSLPALLPDLITYNTLISACAKGHRPRDAQRLVKELE--------------GEGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVITYTSLIQACSKARP-SQVKKALYYLELMKEAREGGGEVXXXXXXXXXXXXXXXXXXXNAGWGETALRLFEEMQERGMEAPAQVYRALVQACGNDVVPEGRAPTPSGP--SGASDTSAAMRASTPPAPR----------------------RPMTTARVWSLLQACPPAHRNNFVYTAAAKACERGRDWGMALRLVEDMRRLGIEPDDITHGQLLHVLASMGRWEEALGVLASIRRRNVRHYTSAIRACGLA--GGAAAREGMPLYVRMREEGLVPDLYVYNVVLQALRAADCDLPGNGQPLSXXXXXXXXXXXXXXXADDALALYEEMCG---NSPAKYAAGTLSFGKNNRRGQQLPRSLPPPPPVTPDIVSFTVLISILERHGRHAQALRVFQDGVRAQVLMTTPLDTLWEKDLSRLSFQLVRAAVDFSVGELVADFRHQLKAAAGTKDPDVQDLVLITGSDVRGARGAGGGPRQDGMGKERMGAAHGQVPETRQALARLVLSEKGLIPADEESRKPGVLTVPANVMRQWLCKQ 699
BLAST of NO26G01440 vs. NCBI_GenBank
Match: XP_005853866.1 (ppr repeat-containing protein [Nannochloropsis gaditana CCMP526] >EKU22494.1 ppr repeat-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 445.7 bits (1145), Expect = 4.300e-121 Identity = 259/464 (55.82%), Postives = 307/464 (66.16%), Query Frame = 0 Query: 666 MKEEGIEAPPQVYRALVQACGNDVVPVGEEDEEEGKERKGEHKTISINRGRIDRNPKSAXXXXXXXXXXXXXXXXXXXXXXXTTAKVWNLLQSCPPAHRNNFVYTAAVKACERGRDWRMALRLLEDMKTIRLEPDDVTHGQLLHVLSSTGRWAEALQVLGSIRKRNIRHYTSAIRACGSAKEEGEAARQGRRLYMELKGEGLVPDLFVYNVVLQALRA------GSSSSSS--------------VADDALALYDEMRGKTINLGNKSSCASFSPSPLTNKG-HLP--YPPPPPVAPDIVTITVLISILEKHGRHVEALRVFSDGVRANVLMTTRLDSLWERDLSRLSYQLVRAAIDYTLRELVKEFKLQKKAAAGSKEPNVNDLVLITGVDLR-KREKGGVATGGGNSSSR------DDPETRQGLACLVLREKGLVPAEQEVGEAGILKVPAKGLREWLVKQ 1100 M+E G+EAP QVYRALVQACGNDVVP G G G T + R P+ TTA+VW+LLQ+CPPAHRNNFVYTAA KACERGRDW MALRL+EDM+ + +EPDD+THGQLLHVL+S GRW EAL VL SIR+RN+RHYTSAIRACG A G AAR+G LY+ ++ EGLVPDL+VYNVVLQALRA G+ S ADDALALY+EM G N K + + S +G LP PPPPPV PDIV+ TVLISILE+HGRH +ALRVF DGVRA VLMTT LD+LWE+DLSRLS+QLVRAA+D+++ ELV +F+ Q KAAAG+K+P+V DLVLITG D+R R GG G R PETRQ LA LVL EKGL+PA++E + G+L VPA +R+WL KQ Sbjct: 1 MQERGMEAPAQVYRALVQACGNDVVPEGRAPTPSGP--SGASDTSAAMRASTPPAPR----------------------RPMTTARVWSLLQACPPAHRNNFVYTAAAKACERGRDWGMALRLVEDMRRLGIEPDDITHGQLLHVLASMGRWEEALGVLASIRRRNVRHYTSAIRACGLA--GGAAAREGMPLYVRMREEGLVPDLYVYNVVLQALRAADCDLPGNGQPLSXXXXXXXXXXXXXXXADDALALYEEMCG---NSPAKYAAGTLSFGKNNRRGQQLPRSLPPPPPVTPDIVSFTVLISILERHGRHAQALRVFQDGVRAQVLMTTPLDTLWEKDLSRLSFQLVRAAVDFSVGELVADFRHQLKAAAGTKDPDVQDLVLITGSDVRGARGAGGGPRQDGMGKERMGAAHGQVPETRQALARLVLSEKGLIPADEESRKPGVLTVPANVMRQWLCKQ 435
BLAST of NO26G01440 vs. NCBI_GenBank
Match: XP_002295774.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64491.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 102.1 bits (253), Expect = 1.200e-17 Identity = 150/547 (27.42%), Postives = 230/547 (42.05%), Query Frame = 0 Query: 505 MESLPSLPPDLV-SYNTVISACARGNRPQDAQRLVKAMEQ-RASRSSNSSSTRGAEGGRVVPSLVTYNSLLAALAQGGQWKEAMAVLQTLRRKGLKADVITYTSLIQACSKAKPYPQVKKALFFLDEMRGGEWRKGKRVEEVACARGGVGAGWGQTALGLYEEMKEEGIEAPPQVYRALVQACGNDVVPVGEEDEEEGKERKGEHKTISINRGRIDRNPKSAXXXXXXXXXXXXXXXXXXXXXXXTTAKVWNLLQSCPPAHRNNFVYTAAVKACERGRDWRMALRLLEDMKTIRLEPDDVTHGQLLHVLSSTGRWAEALQVLGSIRKRNIRH----YTSAIRACGSAKEEGEAAR--QGRRLYMELKGEGLVPDLFVYNVVLQALRAGSSSSSSVADDALALYDEMRGKTINLGNKSSCASFSPSPLTNKGHLPYPPPPPVAPDIVTITVLISILEKHGRHVEALR---VFSDGV-RANVLMTTRLDSLWERDLSRLSYQLVRAAIDYTLRELVKEFKLQKKAAAGSKEPNVNDLVLITGVDLRKRE 1040 +E L S+ P +Y VIS R R DA L++ ME S+S + PSL Y ++L ALAQGGQ+ + M++L +RR+ ++ +V TY SL+ C+K + P+ K+AL L + + +E GI Y ++AC + ++ + + XXXXXXXXXXXXXXXXXXXXX T + N+ N Y +A+ A + A + DD T H +S W AL ++ + K ++ Y++AI CG+A G + L+ E+K +GL PDL YN ++ G+ +++ D+ L+ EM C S ++PDIVT+T +I+ L++ + R VF++ V R +L LDS WE DLS +S+ + RAA + R + + ++E +V DL LITG R RE Sbjct: 114 VELLQSMNPSTPHAYEIVISGYGRRGRWSDANNLLQQMENITYSKSISKDGNDATSVHDCGPSLNVYQTVLTALAQGGQYDKVMSLLTKMRRRQVRPNVYTYNSLLNICAKDRT-PRWKEALSLLSQCQ-----------------------------------REPGINPDLVTYTTAMRACA------------QARKSNKAMEIFRVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDMTMRSTNM-------RINAITYNSAISALAKA-----ARSESRQQRRFDYNKDDETD----HAQNSDILWRRALDLIECMEKEGVKRDVFTYSAAISTCGAAAACGNCGQWDAAYELFNEMKLDGLQPDLVSYNALV-----GAGMTANKPDEVFDLWIEM------------CQQKSEG---------------ISPDIVTVTEVIATLDRSIGNANRARVDTVFAEAVSRGIILREDSLDSAWEFDLSGMSFPVARAACRFIFRRIAEN--------VSNEEESVKDLSLITGAS-RMRE 555 The following BLAST results are available for this feature:
BLAST of NO26G01440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G01440 ID=NO26G01440|Name=NO26G01440|organism=Nannochloropsis oceanica|type=gene|length=3801bpback to top protein sequence of NO26G01440.1 >NO26G01440.1-protein ID=NO26G01440.1-protein|Name=NO26G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1100bpback to top Synonyms
Publications
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