NO26G01420, NO26G01420 (gene) Nannochloropsis oceanica

Overview
NameNO26G01420
Unique NameNO26G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3624
Alignment locationchr26:448861..452484 +

Link to JBrowse

Properties
Property NameValue
Descriptionnuclear poly(a) polymerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:448861..452484 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0031123RNA 3'-end processing
GO:0043631RNA polyadenylation
GO:0043631RNA polyadenylation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0016779nucleotidyltransferase activity
GO:0004652polynucleotide adenylyltransferase activity
GO:0004652polynucleotide adenylyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR011068NuclTrfase_I_C
IPR007012PolA_pol_cen_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO26G01420 vs. NCBI_GenBank
Match: EWM23181.1 (poly polymerase-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 391.3 bits (1004), Expect = 8.800e-105
Identity = 222/443 (50.11%), Postives = 281/443 (63.43%), Query Frame = 0
Query:    1 MTPPISLDQPTAAEKEATSNLKAYMRALGSYESGDMATARKQVLTTLQGLAEEWCEVLRPEKEGMRKATAAAPVATPVGAPSFCATTXXXXXXXXXXXXXXXXXXXXXXXALESSTAKGVXXXXXXXXXTMPTHSRPPSPPKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYP-PWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESL 443
            ++PP+++D PT AE+EAT +L+A+++  GSYES  M+ AR +V+  LQ +AE WCE L   K G     AAAP +  +   +  A +                         + STA            ++P+  R  S PKP+LLPFGSYRLDCHDPTSDLDLLL++P G ASR DFF DF G+ L  H GV  +CPVPEAYTPV+KF + G+AVDLLFV+L   EG   G             DLLD  +L+GLD+   RS+NGVRVAE IL+LVP    F+ TLRA+KLWA+RR LYSSVLGFLGGV+ AIL AF+CQ+YP A+P+ LLL FFRVY++W WPS + PVLLCP       A  HLS W P P + +     SLM ++TP FP+MNSA NVG+PQLRRLQEEL+RA  LTR W L P  + + R +  W +L
Sbjct:   14 VSPPVNVDPPTEAEREATRHLEAFLKEAGSYESEGMSAARVKVIAKLQRMAEAWCEDLH-GKAG--SCPAAAPRSDALSRLATQAASNDR----------------------DGSTA----HPPAASLPSLPSEPRQASHPKPLLLPFGSYRLDCHDPTSDLDLLLVLPRGLASRADFFQDFAGRVLRHHSGVSGLCPVPEAYTPVLKFRMDGLAVDLLFVALHGAEGGAKG------GGELSGADLLDPSFLRGLDEWEVRSLNGVRVAEAILRLVPEPAAFSLTLRALKLWARRRKLYSSVLGFLGGVNLAILAAFVCQKYPLATPATLLLAFFRVYARWPWPSPAHPVLLCPXXXXXXXACAHLSSWTPSPAAGTRPLPPSLMTIVTPTFPAMNSAHNVGLPQLRRLQEELRRAESLTRPWLLDP--RHLRRLQGGWRAL 419          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: CBJ48472.1 (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 306.6 bits (784), Expect = 2.800e-79
Identity = 202/582 (34.71%), Postives = 298/582 (51.20%), Query Frame = 0
Query:    5 ISLDQPTAAEKEATSNLKAYMRALGSYESGDMATARKQVLTTLQGLAEEWCEVLRPEKEGMRKATAAAPVATPVGAPSFCATTXXXXXXXXXXXXXXXXXXXXXXXALESSTAKGVXXXXXXXXXTMPTHSRPPSPPKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPI----VSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVNN-------YDISPAVEDFLLKVNIW---QHRSPSMHIDIQHV 573
            IS  +P + +  A+  L+ +++A+G YE+ + +  RK VL  L  L +EW   +  E EG+ K                                             E S A                           L  FGSY L  H P +D+D+L + P    SR  FF+ F  Q L  H  + ++ PVPEAYTPV+KF   G+++D+LF SL   +                  ++    +L+ LDD G RS+NGVRVAE+IL LVP+   F +TLRAVK WA+RRG+YS+VLG LGGV+WAILVAF+ QRYP+ASPS LL  FF +Y +W WP+  +   L  +    V+  HP F   +VW P  +    ++  LMP+ITPA+P+MNS++NVG PQ+R ++EE+ R   +T+  +LG  +         W +LFE S +F RF  ++QVD+  +   + +      WFGW+ESR+RS ++ L+Q  ++ +YP    LPNP+ ++A     G       SFF+ L F    N         D++PA  DF+++V +W   + R   M +D++ V
Sbjct:   15 ISDREPESKDLAASQELEKFLKAMGLYENAEGSKRRKAVLLMLLKLVKEWSGKIAAE-EGLDKE--------------------------------------------EVSPA--------------------------TLKTFGSYHLGVHTPDADIDVLCLAPR-HCSRESFFTSFC-QILRNHTEIDELFPVPEAYTPVIKFKAQGVSIDMLFCSLHYPK-------------LPRLCNVHVQEHLRHLDDAGVRSLNGVRVAELILSLVPNHQAFRTTLRAVKEWARRRGIYSNVLGCLGGVNWAILVAFVVQRYPNASPSVLLTKFFLMYHRWKWPNHVSLNELQSLQETNVTEGHP-FPLHAVWNPVANPRDKAH--LMPIITPAYPAMNSSYNVGEPQMRLIREEIARGWRITKGISLGIAN---------WANLFERSDFFWRFELYVQVDISARSAADHR-----LWFGWIESRMRSFLVCLDQIDMVEAYPFVNPLPNPYLTNAETGAVGN------SFFIGLGFPEVANGRSPSGVPVDLTPAWRDFMMRVELWGDRRRRREGMEVDVKAV 487          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: XP_002295946.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64663.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 294.7 bits (753), Expect = 1.100e-75
Identity = 193/504 (38.29%), Postives = 261/504 (51.79%), Query Frame = 0
Query:  133 THSRPPSPPKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLV-------------PHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPL-LHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLPPCCFARELSNPPPLPVAEPLHPPLQLEHQQQEQNKRKRAVVDGQ 623
            T+ + P    P LL FGSYRL  H P+SD+D L++ P    +R DFF+ +V   L     V+++ PV  AYTPV+KF + G+ +DL+F  L     +   E              LD   L GLD+   RS+NGVRVA+ +L  +               V +F  TLRAVK WA+  GLYS+VLGFLGGV+WAILV ++C+RYP A  S LL +FF+ +S W WP    PVLL      P    ++L VW P  SS+      LMP+ITP +PSMNS++NVG PQLRRL++E  RA+ L    A G          ++W  LFE + +F +  N+LQVD            +F  WFG  E+R+R LI  LE P   + +YP A+            R+ G G     SFF+AL F   V   D++P V DFL  +N W  R P+M + I+ V+R  LP   F  E              P L+  +QQ   N+     V+ Q
Sbjct:   36 TNRKVPPTSSPALLSFGSYRLSVHTPSSDIDCLVLAP-PHLTRDDFFTTWV-TALQNEARVKELHPVSGAYTPVIKFEIEGVKIDLIFARLNEPTINNHDELDEIKEME------LDDTLLIGLDETSVRSINGVRVAQYLLSTLETTDKNRKNYDSATQVDNFRLTLRAVKEWARVHGLYSNVLGFLGGVNWAILVCWVCKRYPDAPASTLLQIFFKTFSTWKWP---MPVLLSTQKQRPPEGVNNLPVWDP--SSNFRDAKHLMPIITPCYPSMNSSYNVGEPQLRRLRDEFARASKLCSDVAFG---------TKKWGVLFEWNEFFQQHANYLQVDTVA-----TNEDDFRAWFGLCEARMRLLIAGLESPGFGVRAYPFAKFFHR--------REDGGGGNYIASFFIALRFANKVWKVDLAPLVTDFLTVINSWDGREPTMDLMIRLVSRKDLPSFVFDAEKRE------EHITKPVLKPNNQQSSANRTDEDDVENQ 498          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: PON47332.1 (Poly(A) polymerase [Parasponia andersonii])

HSP 1 Score: 281.2 bits (718), Expect = 1.300e-71
Identity = 173/492 (35.16%), Postives = 261/492 (53.05%), Query Frame = 0
Query:  145 LLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVN-----NYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLPPCCFARELSNPPPLPVAEPLHPPLQLEHQQQ---EQNKRKRAVVDGQGESSQR 629
            +  FGSYRL  H P +D+D L + P       DFF + + + L     V ++ PVP+A+ PV++F  GG+++DLL+  L L                   +D+     LQ +D+   RS+NG RV + IL+LVP++  F +TLR ++LWAKRRG+YS+V GFLGG++WA+LVA ICQ YP+A P+ L+  FFRVY+QW WP+   PV+LC I          L VW P    +      LMP+ITPA+PSMNS++NV    LR + EE +R + +          K M   K  W++LFE  P+F  + N+LQ+D+       E   +   W GWV SRLR L + +E+    H+Y + +  P+P   S       +      S+F+ L  +  V+     ++DI   VE+F   VN++    P M I + HV R  +P   F   +  P P  +   +   L+L+   Q   +++   + V+DG  + S+R
Sbjct:   92 IFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGE-LHRMLAEMPEVTELHPVPDAHVPVLQFKFGGVSIDLLYAKLSL-------------WVIPEDLDISQDSILQNVDEQTVRSLNGCRVTDQILRLVPNIQSFRTTLRCMRLWAKRRGVYSNVTGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPN---PVMLCAI----EEGSLGLQVWDP--RRNPKDRYHLMPIITPAYPSMNSSYNVSSSTLRIMSEEFQRGSEI---------CKAMESNKAEWDTLFEPYPFFEAYKNYLQIDI-----SAENADDLRNWKGWVASRLRQLTLKIER----HTYNMLQCHPHPGDFS------DKSKPFHCSYFMGLQRKQGVSANDGGHFDIRLTVEEFKQAVNVYTLWKPGMEIHVCHVKRKNIPNFVFPGGVRPPRPSKLTWDMRQALELKASVQILPDKSDESKTVLDGSDDGSKR 536          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: GAX09297.1 (poly(A) polymerase [Fistulifera solaris])

HSP 1 Score: 280.0 bits (715), Expect = 2.900e-71
Identity = 175/465 (37.63%), Postives = 248/465 (53.33%), Query Frame = 0
Query:  134 HSRPPSP---PKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXM-------------DLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQG----EGARRRVSFFVALVFEASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLP 579
            HS P +P   P+  L+  GS+RL  H  TSDLD+L I P    +R DFF+  V   L +   +  V P+P AYTPV+KF+L G  +D+LF  +     D   +           +              ++D R L GLD+ G RS+NG RV +M+ ++VP    FT+ L+AVK WA + G+YS+VLGFLGG++WAILVA++C+ +P AS S LL +FFRV++ W W   + PV+L PI   P      L  W P  +     +  +MP+ITPA+PSMNS++NVG PQLR +Q E+  A               + + K  + +LF+ S +F+R  +F+QV +     R   R +F  WF  VESRLR LI  LE    +H++P A      + S      QG    E A     FF+AL F   V+  D+  A   FL  VN W +R   M + ++H+T   LP
Sbjct:   78 HSFPENPWQTPRVTLVSIGSFRLGVHRKTSDLDVLAIAPPS-CTRKDFFTSLV-DMLKSDPLIDQVHPIPTAYTPVIKFLLKGFQIDMLFARV-----DNPSKLLAFQRQRVSPLVTTQLVSSTPRVEYIIDDRDLVGLDEAGVRSMNGARVCQMLQEMVPDYKAFTTVLKAVKEWAHQSGIYSNVLGFLGGINWAILVAWVCKNHPRASTSNLLEIFFRVFASWKW---ANPVILQPIQQAPPEGVVELPAWNPDVNPRDGLH--IMPIITPAYPSMNSSYNVGFPQLRSIQNEMILAC------------NHLRKHKNDFAALFKPSDFFSRHEHFVQVTI-----RATSRQDFVEWFRLVESRLRVLITDLETEQ-VHAWPFARFFDRSYDSDGNCLGQGKTKDENAIHESLFFIALRFADEVDTIDMRFAPSAFLHNVNSWSNRVSGMDLSLKHITSSELP 512          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: XP_002447008.1 (nuclear poly(A) polymerase 4 [Sorghum bicolor])

HSP 1 Score: 279.6 bits (714), Expect = 3.700e-71
Identity = 202/587 (34.41%), Postives = 272/587 (46.34%), Query Frame = 0
Query:    4 PISLDQPTAAEKEATSNLKAYMRALGSYESGDMATARKQVLTTLQGLAEEWCEVLRPEKEGMRKATAAAPVATPVGAPSFCATTXXXXXXXXXXXXXXXXXXXXXXXALESSTAKGVXXXXXXXXXTMPTHSRPPSPPKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVF-----------EASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLPP 580
            PISL  PT A+ EAT+ L+  +R  G YES   +  R +VL  LQG+ + W + L   K G   A                                           ++ +TA                          +LLPFGSYRL  H   SD+D L++ P       DFF    G      E V D+ PVP A+ PV+K    G+ VDL++ S+ L     D             +DL D   L+GLD   ARS+NGVRVA+ IL+LVP    F + LR VKLWAK RG+YS+V GFLGGV+WAILVA +CQ YP+A+PS L+  FF+V SQW WP   TPV+LC I    H     L VW      +      LMP+ITPA+P MN  +NV     R ++E+++   +  +  A G            W +LF+  P+F    ++LQVD  V  G EE R     W GWVESRLR L+  +E+          E L +  P   AY  +  G R   SFFV L             +     +D+    ++FL  V  ++   P + + ++HV R  LPP
Sbjct:   16 PISLVGPTPADLEATAELEKVLREAGMYESPQESAVRAEVLRDLQGIVDRWVKQL-TLKHGYPDA------------------------------------------MVDEATA--------------------------LLLPFGSYRLGVHGGGSDIDALVVGPSFVDRDQDFFGVLAGALAEATEAVTDLQPVPGAHVPVMKLRFRGVQVDLVYASVNLPVVPRD-------------LDLSDRAVLRGLDHVTARSMNGVRVADEILRLVPDAAAFRTALRCVKLWAKARGVYSNVSGFLGGVAWAILVARVCQLYPNAAPSMLVSRFFKVLSQWKWP---TPVMLCDI---EHDDELGLPVW--DGRRNPRDRTHLMPVITPAYPCMNCTYNVSQATQRIIKEQIQAGHVACQEIAAG--------GDRGWGALFQPFPFFRTHKSYLQVDATVAGGEEELR----EWKGWVESRLRQLVAKVERD------TFGELLCHQNP--RAYDAEPHGLRCASSFFVGLSKPQQQRQQPSPPQGQQPQFDLRATADEFLQDVYTYRFWRPGLELAVKHVRRKDLPP 492          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: XP_012200950.1 (hypothetical protein SPRG_06753 [Saprolegnia parasitica CBS 223.65] >KDO28514.1 hypothetical protein SPRG_06753 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 279.6 bits (714), Expect = 3.700e-71
Identity = 177/437 (40.50%), Postives = 239/437 (54.69%), Query Frame = 0
Query:  148 FGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSS--SSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFE----ASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLP 579
            FGSYRL  H P +D+D L ++P     R  FF  F   +L  H  V  V  VP+AY PV+KF L GI++DLLF +L +     D             +D+LD++YL  +D+ G RS+NG RVAEMIL+LVP++  F +TL AVK WA+ RG+YS+VLGFLGGV+WAILVA +CQ YP +    LL  FFRVY QW WP+   P+LL  I      +   LS+  P W+   +    + LMP+ITPA+P+MNS++NV    L  ++ E + AA          T   +  +   WE LFE S +F R+ +FLQ+DV            F  WFGWVESRLR L   LEQ P +  +P A     P P        G       S F+AL F     A+  + D++ AV+DF   V+ W  R+  M + + +  R  LP
Sbjct:   87 FGSYRLGVHSPEADIDTLCLMPR-HCLRTSFFQTF-PSRLQEHPEVASVQSVPDAYVPVIKFKLSGISIDLLFATLNVAAVPVD-------------IDVLDVKYLVDVDEPGVRSLNGCRVAEMILQLVPNIEQFRTTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGTLLTKFFRVYHQWTWPN---PILLNRI----DESLGDLSI--PTWNPKLNPRDRSHLMPIITPAYPAMNSSYNVLESTLAMMKSEFRSAA---------ATCVDIEIQSVPWEDLFEDSTFFKRWDHFLQLDVLA------ATASFPAWFGWVESRLRQLFSRLEQVPDVQIFPFARVFDLP-PEVLDEGCSGG------SLFIALNFTVPRGATRFSVDLTAAVQDFAALVDTWLGRTSDMDVTVHYKRRSALP 477          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: KXG27007.1 (hypothetical protein SORBI_3006G195600 [Sorghum bicolor])

HSP 1 Score: 279.6 bits (714), Expect = 3.700e-71
Identity = 202/587 (34.41%), Postives = 272/587 (46.34%), Query Frame = 0
Query:    4 PISLDQPTAAEKEATSNLKAYMRALGSYESGDMATARKQVLTTLQGLAEEWCEVLRPEKEGMRKATAAAPVATPVGAPSFCATTXXXXXXXXXXXXXXXXXXXXXXXALESSTAKGVXXXXXXXXXTMPTHSRPPSPPKPVLLPFGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVF-----------EASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLPP 580
            PISL  PT A+ EAT+ L+  +R  G YES   +  R +VL  LQG+ + W + L   K G   A                                           ++ +TA                          +LLPFGSYRL  H   SD+D L++ P       DFF    G      E V D+ PVP A+ PV+K    G+ VDL++ S+ L     D             +DL D   L+GLD   ARS+NGVRVA+ IL+LVP    F + LR VKLWAK RG+YS+V GFLGGV+WAILVA +CQ YP+A+PS L+  FF+V SQW WP   TPV+LC I    H     L VW      +      LMP+ITPA+P MN  +NV     R ++E+++   +  +  A G            W +LF+  P+F    ++LQVD  V  G EE R     W GWVESRLR L+  +E+          E L +  P   AY  +  G R   SFFV L             +     +D+    ++FL  V  ++   P + + ++HV R  LPP
Sbjct:   14 PISLVGPTPADLEATAELEKVLREAGMYESPQESAVRAEVLRDLQGIVDRWVKQL-TLKHGYPDA------------------------------------------MVDEATA--------------------------LLLPFGSYRLGVHGGGSDIDALVVGPSFVDRDQDFFGVLAGALAEATEAVTDLQPVPGAHVPVMKLRFRGVQVDLVYASVNLPVVPRD-------------LDLSDRAVLRGLDHVTARSMNGVRVADEILRLVPDAAAFRTALRCVKLWAKARGVYSNVSGFLGGVAWAILVARVCQLYPNAAPSMLVSRFFKVLSQWKWP---TPVMLCDI---EHDDELGLPVW--DGRRNPRDRTHLMPVITPAYPCMNCTYNVSQATQRIIKEQIQAGHVACQEIAAG--------GDRGWGALFQPFPFFRTHKSYLQVDATVAGGEEELR----EWKGWVESRLRQLVAKVERD------TFGELLCHQNP--RAYDAEPHGLRCASSFFVGLSKPQQQRQQPSPPQGQQPQFDLRATADEFLQDVYTYRFWRPGLELAVKHVRRKDLPP 490          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: OQR84109.1 (hypothetical protein ACHHYP_20703 [Achlya hypogyna])

HSP 1 Score: 279.6 bits (714), Expect = 3.700e-71
Identity = 174/444 (39.19%), Postives = 247/444 (55.63%), Query Frame = 0
Query:  148 FGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSP-PHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFE----ASVNNYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLPPCCFAREL 587
            FGSYRL  H P +D+D L ++P     R++FF  F   +L  H  V  V  VP+AY PV+KF + GI++DLLFV+L L     D             +D+LD ++L  +D+ G RS+NG RVAEMIL+LVP++  F +TL AVK WA+ RG+YS+VLGFLGGV+WAILVA +CQ YP +    LL  F+RVY QW WP+   P+LL  + +P P  A   ++ W P    +      LMP+ITPA+P+MNS++NV    L  ++ E + AA          T   +  +   WE LF+ + +F R+ +FLQ+DV           +F+ WFGWVESRLR L   LEQ P L  +P A     P     A      G+    S F+ L F     A+  + D++ A++DF   ++ W  R+  M + + +  R  LPP    R++
Sbjct:  100 FGSYRLGVHSPEADIDTLCLMPR-HCLRINFFQAF-PSRLQAHPAVTGVQSVPDAYVPVIKFKVHGISIDLLFVTLALSAVPSD-------------LDVLDSKHLVEVDEQGVRSLNGCRVAEMILQLVPNLEQFRTTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGPLLTKFYRVYHQWTWPN---PILLNRLDAPQPELA---IASWNP--KLNPRDRGHLMPIITPAYPAMNSSYNVLECTLHMMKAEFRTAA---------ATCVDIEMQSAPWEELFDDATFFDRWDHFLQLDV------SAAPAQFAVWFGWVESRLRQLFSRLEQVPDLQVFPFARVFDLPPCDDGA-----SGS----SLFIGLNFTVPRGATRFSVDLTAAIQDFAALLDTWLGRTSDMDVTVHYKRRAELPPWATKRKV 496          
BLAST of NO26G01420 vs. NCBI_GenBank
Match: XP_008880161.1 (hypothetical protein H310_14143 [Aphanomyces invadans] >ETV91324.1 hypothetical protein H310_14143 [Aphanomyces invadans])

HSP 1 Score: 279.3 bits (713), Expect = 4.900e-71
Identity = 178/440 (40.45%), Postives = 241/440 (54.77%), Query Frame = 0
Query:  148 FGSYRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEG-VRDVCPVPEAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEXXXXXXXXXXXMDLLDLRYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLYSSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTPVLLCPIVSP--PHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFNVGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFTRFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSYPLAE--ALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVN----NYDISPAVEDFLLKVNIWQHRSPSMHIDIQHVTRPLLP 579
            FGSYRL  H P +D+D L + P    SR+ FF+ F    L+ H+  V  V  +P+AY PV+KF + G+A+DLLFV+L +     D             +DLLD + L+ +D+ G RS+NG RVAEMIL+LVP++  F  TL AVK WA+ RG+YS+VLGFLGGV+WAILVA +CQ YP +    LL  FFRVY QW WP+   P+LL  I+     H    HL  W P        +  LMP+ITPAFP+MNS++NV    LR +Q E ++AA +     L         +   WE LF  S +F R+ +FL++DV            F+ WFGWVESRLRSL   LEQ   +   P A    +P    +  A      G     S FV L F    N    + D + AV++F   +++W  R+  M + + +V R  LP
Sbjct:   86 FGSYRLGVHSPEADIDTLCLAPR-HCSRLGFFTSF--PLLLKHQAQVTSVHSIPDAYVPVIKFQVLGVAIDLLFVALDVASVPED-------------IDLLDPKTLRDVDEPGVRSLNGCRVAEMILQLVPNLDQFRLTLVAVKHWARMRGIYSNVLGFLGGVNWAILVARVCQLYPQSLAGTLLTKFFRVYHQWIWPN---PILLNNIMDDDGKHAELHHLQSWNPKLYPRDRLH--LMPIITPAFPAMNSSYNVLDCTLRLMQAEFRQAATVCVDIEL---------QSLPWEELFLESSFFNRWEHFLRIDV------SSDPAHFTSWFGWVESRLRSLFGRLEQMEDVDIAPFARFYDIPTDDQTDTATSSTSTGVTSS-SCFVGLAFHLPDNAQRFSVDFTAAVQEFAAVLDLWPQRTSDMDLQVHYVRRTQLP 488          
The following BLAST results are available for this feature:
BLAST of NO26G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23181.18.800e-10550.11poly polymerase-like protein, partial [Nannochloro... [more]
CBJ48472.12.800e-7934.71conserved unknown protein (Partial), partial [Ecto... [more]
XP_002295946.11.100e-7538.29predicted protein [Thalassiosira pseudonana CCMP13... [more]
PON47332.11.300e-7135.16Poly(A) polymerase [Parasponia andersonii][more]
GAX09297.12.900e-7137.63poly(A) polymerase [Fistulifera solaris][more]
XP_002447008.13.700e-7134.41nuclear poly(A) polymerase 4 [Sorghum bicolor][more]
XP_012200950.13.700e-7140.50hypothetical protein SPRG_06753 [Saprolegnia paras... [more]
KXG27007.13.700e-7134.41hypothetical protein SORBI_3006G195600 [Sorghum bi... [more]
OQR84109.13.700e-7139.19hypothetical protein ACHHYP_20703 [Achlya hypogyna... [more]
XP_008880161.14.900e-7140.45hypothetical protein H310_14143 [Aphanomyces invad... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005926NSK005926Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01420.1NO26G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600742gene_7976Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101132g2gene7270Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01420.1NO26G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01420 ID=NO26G01420|Name=NO26G01420|organism=Nannochloropsis oceanica|type=gene|length=3624bp
ATGACCCCGCCCATCAGCCTCGACCAACCCACAGCAGCGGAAAAGGAGGC
CACCTCCAATTTAAAGGCCTACATGCGGGCATTGGGCTCGTACGAAAGCG
GGGACATGGCCACGGCACGCAAACAGGTCCTAACCACCCTACAGGGGCTG
GCGGAGGAATGGTGCGAGGTGTTGAGGCCCGAGAAGGAGGGGATGAGGAA
GGCGACGGCAGCGGCTCCGGTGGCGACACCTGTGGGTGCACCCTCCTTCT
GTGCCACTACTGCTGCTAATCCAGTGACCGTTACCACAACCAGCTCCACC
ACCACAACCCCAGCTGCTTCCGCCAATATCGCCCTAGAAAGCTCAACGGC
AAAAGGAGTGGCAGCCACTGCAGTAACAGCTTCCAGCACCATGCCAACCC
ATTCCCGTCCTCCCTCCCCTCCCAAACCCGTTCTTCTACCCTTTGGCTCC
TATCGGCTCGACTGTCATGACCCCACTTCCGACTTGGACTTGCTGCTTAT
CATTCCCCACGgtaaaagaatgaagaagaatgaagaaagaggggggatag
aaagagggaggcttgaactgtgtgtctgggtcttatgggtgttgccacgg
aagaagggaaaaggttactgtagccttgtctaactctcctttcctttctg
caaactatacaaacacgcagGATTTGCCTCCCGCATGGATTTCTTTAGTG
ATTTTGTAGGCCAAAAACTAATGACACACGAAGGAGTGCGCGATGTCTGC
CCGGTGCCCGAGGCGTACACACCAGTTGTCAAGTTCGTACTGGGCGGGAT
CGCGGTGGACTTGCTTTTTGTCTCCCTTCGACTAGAAGAAGGCGATGGCG
ATGGCGAGGACGGGAGAGAGGAAGGGAGGGAGGGAAGGGTGATGGACCTA
CTAGACCTGCGTTACTTGCAGGGCTTGGACGACGGAGGTGCAAGGTCCGT
GAATGGGGTGCGGGTAGCCGAGATGATCTTGAAGCTCGTGCCACACGTTG
GACATTTCACCAGCACCCTCCGCGCGGTCAAACTCTGGGCCAAGCGCCGA
GGGCTATACAGCAGCGTCCTCGGTTTCCTTGGAGGAGTAAGCTGGGCCAT
CCTGGTGGCATTTATCTGTCAACGCTACCCTCACGCCTCCCCCTCCAAGC
TCCTCCTCGTCTTCTTCCGCGTCTACTCTCAGTGGAACTGGCCTTCCGCC
TCCACCCCCGTCCTCCTCTGCCCCATCGTTTCCCCACCCCATCCTGCCTT
TGACCACCTTTCCGTCTGGTACCCCCCCTGGAGCAGCAGCAGCAGCAGCA
ACAACAGCTTGATGCCGCTAATTACTCCTGCATTTCCCTCTATGAATAGC
GCGTTCAACGTGGGCATGCCACAACTTAGAAGGCTACAGGAAGAGCTAAA
ACGAGCCGCAATCTTGACAAGAAGCTGGGCATTAGGCCCTACGAGTAAGC
TAATGGCGAGGAGGAAGGAAAGGTGGGAGAGTTTGTTTGAAGTTTCTCCG
TACTTCACTCGGTTTCACAACTTTCTGCAGGTGGACGTCTGGGTGCAGGA
AGGGAGAGAGGAAAAGAGGGGGGAGTTTAGCCGGTGGTTTGGGTGGGTGG
AGTCAAGGCTACGGTCGCTAATTATGGCGCTGGAACAGCCGCCGCTTCTT
CATAGCTACCCTCTGGCTGAGGCCCTGCCTAATCCGTTTCCCTCTTCTGC
TGCTTATCGCCAGCAGGGGGAAGGAGCTAGGCGGCGGGTCTCGTTTTTTG
TGGCGTTGGTGTTTGAAGCTTCAGTCAACAACTACGACATTTCCCCTGCT
GTAGAGGATTTCTTGCTCAAGgtaaaggtggttgattcgatcctgtctcc
gtccctccttcattccttccttttgatctttagtagacagtaacacagac
gactaagctcactttcgcctcccatatccttatttccctccctcccattc
tccccagGTCAATATCTGGCAGCACCGTTCTCCTAGCATGCATATTGATA
TTCAGCATGTTACCCGTCCGCTCCTCCCTCCCTGCTGCTTCGCTCGAGAA
CTGTCTAATCCTCCTCCTCTCCCTGTTGCTGAGCCTCTTCATCCTCCCCT
GCAGCTGGAGCATCAGCAGCAAGAACAAAATAAGAGGAAGAGGGCAGTGG
TGGATGGACAAGGAGAGAGTAGTCAAAGAGGGTTGGAAAGTGAAGGATGT
ATAAATGGCCAAGCTAGCACATACAGCAGCAGCAGCAGCAGCAGCAGCAG
GAGGGGGAGGAACGGCAGCGACAGCAGCAGCGGTACGGATGGCGATGCTC
CGTATACAAGAGGAAGAATGGGAGAGGGAGGAGAAGGAGAAAAAGGAAGA
GGGGGAGGAAAGCATTCTCAACCGACGTCAGCCGTGCCCTTTGCAAGGAT
ATCGGAATGGGGAGGGCCAGGAGGAATGGAAAGAGTAGGAGAAGCAGAAG
GAAAAGGAGAAAAGGGGGGAGGAGGAATGAACAACACCTGGACACGACCT
GCTCACTGGCCAGTCATGAAGCTCGGAGGGCGGGGCCCAAAAGGAGGAGG
AACGGGAGGAGGAGATGGATTAGGAGGAAGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAGAAGGAGGAGGAGGAGGAAGAGGAGCAAGAGAAGCG
GATGGAAGAGCGGGAGGGAGAAAAGGGGGGGGGCAGGGGATAGCAGTGTG
GTATGAACTGGAGCAGCAACAGCACCAGCAGCAGCTTCAGCAGCATTTCT
TACAGCAGCTGCCGCCCTACCAGCAGTACCAACATCAACAACTCTACCAA
CGCTACCAGCACCACCATCACCAATACCACAAGCAGTGGCTACAACTACC
ACCACCGAAAGTCCAGCCTTCAAAACCCAAGAGACGACATAAGAAGAAGG
GGAACATCCAAAATGCGGAACTTGCACAAGCAGTAGCACCACCACCAGCA
GTAGCCCCAGCAGCGGAAGCAGTGGCGCAAGGAGCACCAGCTGGTGCAAC
TGTAATAAGATGTTCTTCCTCCCGAGGAGGAGGAACAGGAAAAGGAGGGA
GAAGAGAGGAGGGAAGCAGGGGTGAAAGAGGGAGAGGAACAAGGTGTAAA
GACGGAACACGAGGGCAGGCAGGAGAAGGAGGAATAGGTCAAGGGGGGGA
AAGAAAGGTCCTCATTATTCCAATAAGCCCAACAGATGAGAGCAGTAGAA
GCATCAGCAGCAAAAGCAGCAACAGCAGCACGCTTCCACTTGATAGTCGT
GTGGTGTACTCTTGCGCTGGTGCTCCTCCTTTGGGTGCTCATGCTGCGGC
GACGGTGAAGCGCCGACGCTTTCCGTAACCCAGTTGAACGTCTATCGTTG
CCGAGTGAGGGGAGAGGAGGAAAAGGAGTGGAGAGGAGGAAGAGCAGAAG
AGAGGGAGCAGCTTTTTTCAACTCGCATCCACCACTATTAAGAAATTGAA
TTGTAAATGCTAGGAAGCGAGGAAAGGAGGAAATATTGAATGATATATAT
CATATACATGGACAATGAAGGGTCGACAATTTGAGCCCAACAACAACGGA
ATCAATAAAGATGAAGGACAGGGAGAGAAAAATTTATGAAGCACTTGAAG
AAGATAAGTTAAAACCTCATTCGC
back to top

protein sequence of NO26G01420.1

>NO26G01420.1-protein ID=NO26G01420.1-protein|Name=NO26G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1011bp
MTPPISLDQPTAAEKEATSNLKAYMRALGSYESGDMATARKQVLTTLQGL
AEEWCEVLRPEKEGMRKATAAAPVATPVGAPSFCATTAANPVTVTTTSST
TTTPAASANIALESSTAKGVAATAVTASSTMPTHSRPPSPPKPVLLPFGS
YRLDCHDPTSDLDLLLIIPHGFASRMDFFSDFVGQKLMTHEGVRDVCPVP
EAYTPVVKFVLGGIAVDLLFVSLRLEEGDGDGEDGREEGREGRVMDLLDL
RYLQGLDDGGARSVNGVRVAEMILKLVPHVGHFTSTLRAVKLWAKRRGLY
SSVLGFLGGVSWAILVAFICQRYPHASPSKLLLVFFRVYSQWNWPSASTP
VLLCPIVSPPHPAFDHLSVWYPPWSSSSSSNNSLMPLITPAFPSMNSAFN
VGMPQLRRLQEELKRAAILTRSWALGPTSKLMARRKERWESLFEVSPYFT
RFHNFLQVDVWVQEGREEKRGEFSRWFGWVESRLRSLIMALEQPPLLHSY
PLAEALPNPFPSSAAYRQQGEGARRRVSFFVALVFEASVNNYDISPAVED
FLLKVNIWQHRSPSMHIDIQHVTRPLLPPCCFARELSNPPPLPVAEPLHP
PLQLEHQQQEQNKRKRAVVDGQGESSQRGLESEGCINGQASTYSSSSSSS
SRRGRNGSDSSSGTDGDAPYTRGRMGEGGEGEKGRGGGKHSQPTSAVPFA
RISEWGGPGGMERVGEAEGKGEKGGGGMNNTWTRPAHWPVMKLGGRGPKG
GGTGGGDGLGGRGGGGGGGGGGREGGGGGRGAREADGRAGGRKGGGQGIA
VWYELEQQQHQQQLQQHFLQQLPPYQQYQHQQLYQRYQHHHHQYHKQWLQ
LPPPKVQPSKPKRRHKKKGNIQNAELAQAVAPPPAVAPAAEAVAQGAPAG
ATVIRCSSSRGGGTGKGGRREEGSRGERGRGTRCKDGTRGQAGEGGIGQG
GERKVLIIPISPTDESSRSISSKSSNSSTLPLDSRVVYSCAGAPPLGAHA
AATVKRRRFP*
back to top
Synonyms
Publications