NO26G01410, NO26G01410 (gene) Nannochloropsis oceanica

Overview
NameNO26G01410
Unique NameNO26G01410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length804
Alignment locationchr26:447233..448036 -

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar protein sorting-associated protein 29
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:447233..448036 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR000979Phosphodiesterase_MJ0936/Vps29
IPR028661Vps29
IPR024654Calcineurin-like_PHP_lpxH
Homology
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_009830926.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV79990.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 268.9 bits (686), Expect = 1.500e-68
Identity = 126/205 (61.46%), Postives = 159/205 (77.56%), Query Frame = 0
Query:    1 MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            MA+FGELVLVLGDMHIPHRA  IPEKFK+MLVPNKMQHVLCTGN++++EQ DEL+ LAPNVH+VRGD D+             SS +P+ KV+TIG+ R+GLCHGHQ++PWGD   L+ L R+L+VD+LITGHTH + +  + GKWF+NPGSI+GAYS+       ++V+PSFIL+A+QG KV+ YVYE K+   V VSK EFVK
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQYDELRGLAPNVHIVRGDFDE-------------SSNYPDKKVITIGQFRIGLCHGHQIVPWGDVDCLAALQRKLNVDILITGHTHQYNLHVQHGKWFVNPGSITGAYSTCT-----QDVVPSFILMAIQGPKVVAYVYELKDGDNVVVSKTEFVK 187          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_005854083.1 (vacuolar protein sorting-associated protein 29, partial [Nannochloropsis gaditana CCMP526] >EKU22277.1 vacuolar protein sorting-associated protein 29, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 268.5 bits (685), Expect = 1.900e-68
Identity = 133/159 (83.65%), Postives = 144/159 (90.57%), Query Frame = 0
Query:    1 MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSS 160
            MAEFGELVLVLGD+HIPHRAAAIPEKFKRMLVPNKMQHVLCTGNL+S EQL+ELK+LAPNVHVVRGDMD+  C SS   LP+ S+ FP+TKVVTIGELR+GLCHGHQVLPWG+  AL  LARELDVDVLITGHTH  QVSERGG+WFLNPGSISGAYSS
Sbjct:    1 MAEFGELVLVLGDLHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLVSHEQLEELKALAPNVHVVRGDMDEA-CPSS---LPA-SAPFPDTKVVTIGELRLGLCHGHQVLPWGEAAALDGLARELDVDVLITGHTHKQQVSERGGRWFLNPGSISGAYSS 154          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_008876507.1 (hypothetical protein H310_11562 [Aphanomyces invadans] >ETV94916.1 hypothetical protein H310_11562 [Aphanomyces invadans])

HSP 1 Score: 264.6 bits (675), Expect = 2.700e-67
Identity = 128/205 (62.44%), Postives = 155/205 (75.61%), Query Frame = 0
Query:    1 MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            MA+FGELVLVLGDMHIPHRA  IPEKFK+MLVPNKMQHVLCTGNL+++EQ DEL+ LAPNVH+VRGD D+              S +P+ KVVTIG+ R+GLCHGHQ++PWGD   L  L R+L+VD+LITGHTH +++    GKWF+NPGSI+GAYS     N   +V+PSFIL+A+QG KV+ YVYE K    V VSK EFVK
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNLVTKEQFDELRDLAPNVHIVRGDFDE-------------GSHYPDKKVVTIGQFRIGLCHGHQIVPWGDVDCLGALQRKLNVDILITGHTHEYKLLVHHGKWFINPGSITGAYS-----NCTPDVVPSFILMAIQGPKVVAYVYELKGGDTVVVSKSEFVK 187          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_009830925.1 (hypothetical protein H257_07184 [Aphanomyces astaci] >ETV79989.1 hypothetical protein H257_07184 [Aphanomyces astaci])

HSP 1 Score: 263.8 bits (673), Expect = 4.700e-67
Identity = 128/220 (58.18%), Postives = 162/220 (73.64%), Query Frame = 0
Query:    1 MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSS--------------FEGGNEG-REVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            MA+FGELVLVLGDMHIPHRA  IPEKFK+MLVPNKMQHVLCTGN++++EQ DEL+ LAPNVH+VRGD D+             SS +P+ KV+TIG+ R+GLCHGHQ++PWGD   L+ L R+L+VD+LITGHTH + +  + GKWF+NPGSI+GAYS+                  ++G R+V+PSFIL+A+QG KV+ YVYE K+   V VSK EFVK
Sbjct:    1 MADFGELVLVLGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQYDELRGLAPNVHIVRGDFDE-------------SSNYPDKKVITIGQFRIGLCHGHQIVPWGDVDCLAALQRKLNVDILITGHTHQYNLHVQHGKWFVNPGSITGAYSTCTQYVQPTLHLPQICHVHHDGRRDVVPSFILMAIQGPKVVAYVYELKDGDNVVVSKTEFVK 207          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: CBJ48594.1 (similar to Vacuolar protein sorting 29 (Vesicle protein sorting 29) [Ectocarpus siliculosus])

HSP 1 Score: 262.3 bits (669), Expect = 1.400e-66
Identity = 129/207 (62.32%), Postives = 158/207 (76.33%), Query Frame = 0
Query:    3 EFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVKGQPA 210
            +FGELVLVLGDMHIPHR AAIPEKFK+MLVPNKMQHVLCTGNL+ ++Q ++L++LAPNVHVVRGD ++             S+TFPETKVV IG+ RVGL HGHQ++PWGD  AL+M  R+L  D+LI+GHTH +QV+E GG+WF+NPGSI+GAYS+ E      + +PSFILLAVQG K + YVY E    +VEVSK EF K   A
Sbjct:    4 DFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEE-------------STTFPETKVVQIGQFRVGLTHGHQIVPWGDPNALAMTQRQLGADILISGHTHRNQVNEFGGRWFINPGSITGAYSAVES-----DAVPSFILLAVQGAKCVTYVY-ELHGDQVEVSKSEFSKASSA 191          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: OQR96672.1 (vacuolar protein sorting-associated protein 29-like [Thraustotheca clavata])

HSP 1 Score: 260.0 bits (663), Expect = 6.700e-66
Identity = 124/204 (60.78%), Postives = 158/204 (77.45%), Query Frame = 0
Query:    2 AEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            A+FGELVLV+GD+HIPHRA  IPEKFK+MLVPNKMQHV+CTGNL+++EQ DEL+ LAPNVHVVRGD D+             S+TFP+ KV+TIG+ R+G+CHGHQ++PWGD  +L+ L R+L+VD+LITGHTH +++  + GKWF+NPGSI+GAYS+F       +VIPSFIL+AVQ  KV+ YVYE K    V VSK E+ K
Sbjct:    3 ADFGELVLVVGDLHIPHRALDIPEKFKKMLVPNKMQHVVCTGNLVTKEQFDELRDLAPNVHVVRGDFDE-----------VESTTFPDKKVITIGQFRIGICHGHQIVPWGDVDSLAALQRKLNVDILITGHTHEYKLHTQNGKWFVNPGSITGAYSNFT-----PDVIPSFILMAVQANKVVAYVYELKN-DNVVVSKSEYTK 189          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: OQR87731.1 (membrane coat complex retromer, subunit VPS29/PEP11 [Achlya hypogyna])

HSP 1 Score: 258.1 bits (658), Expect = 2.600e-65
Identity = 121/204 (59.31%), Postives = 157/204 (76.96%), Query Frame = 0
Query:    2 AEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            A+FGELVL++GD HIPHRA  +PEKFK+MLVPNKMQHVLCTGNL+++EQ DEL+ LAPNVHVVRGD D+             ++ FP+ KV+TIG+ R+GLCHGHQ++PWGD  +L+ L R+++VD+L+TGHTH +++  + GKWF+NPGSI+GAYS+F       EV+PSFIL+A+QG KV+ YVYE K    V VSK EF K
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDVPEKFKKMLVPNKMQHVLCTGNLVTKEQFDELRDLAPNVHVVRGDFDE-------------NTNFPDKKVITIGQYRIGLCHGHQIVPWGDADSLAALQRKMNVDILVTGHTHQYKLHTQNGKWFVNPGSITGAYSNFLA-----EVVPSFILMAIQGNKVVAYVYELK-GDNVVVSKSEFSK 187          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_012202353.1 (hypothetical protein SPRG_07685 [Saprolegnia parasitica CBS 223.65] >KDO26972.1 hypothetical protein SPRG_07685 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 256.1 bits (653), Expect = 9.700e-65
Identity = 122/204 (59.80%), Postives = 156/204 (76.47%), Query Frame = 0
Query:    2 AEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            A+FGELVL++GD HIPHRA  IPEKFK+MLVPNKMQHVLCTGNL+++E  DEL+ LAPNVHVVRGD D+             ++TFP+ KVVTIG+ R+GLCHGHQ++PWGD  +L+ L R+++VD+L+TGHTH +++  + GKWF+NPGSI+GAY     GN   +V+PSFIL+A+QG KV+ YVYE K    V VSK EF K
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDE-------------NATFPDKKVVTIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAY-----GNFTPDVVPSFILMAIQGNKVVAYVYELK-GDNVVVSKSEFSK 187          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: XP_008619955.1 (hypothetical protein SDRG_15557 [Saprolegnia diclina VS20] >EQC26617.1 hypothetical protein SDRG_15557 [Saprolegnia diclina VS20])

HSP 1 Score: 255.8 bits (652), Expect = 1.300e-64
Identity = 121/204 (59.31%), Postives = 156/204 (76.47%), Query Frame = 0
Query:    2 AEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            A+FGELVL++GD HIPHRA  IPEKFK+MLVPNKMQHVLCTGNL+++E  DEL+ LAPNVHVVRGD D+             ++TFP+ KV+TIG+ R+GLCHGHQ++PWGD  +L+ L R+++VD+L+TGHTH +++  + GKWF+NPGSI+GAY     GN   +V+PSFIL+A+QG KV+ YVYE K    V VSK EF K
Sbjct:    3 ADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDE-------------NTTFPDKKVITIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAY-----GNFTPDVVPSFILMAIQGNKVVAYVYELK-GDNVVVSKSEFSK 187          
BLAST of NO26G01410 vs. NCBI_GenBank
Match: GAY02378.1 (Hypothetical protein PINS_010187 [Pythium insidiosum])

HSP 1 Score: 245.7 bits (626), Expect = 1.300e-61
Identity = 116/202 (57.43%), Postives = 150/202 (74.26%), Query Frame = 0
Query:    4 FGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQLDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRVGLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNPGSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSKVEFVK 206
            FGELVLVLGD ++PHRAA IPEKF++MLVPNK+QH+LCTGNL+S+EQ ++L++LAPNVHVVRGD D               +TFP+ KVV IG+ R+GLCHGHQ++PWGD+ +LS L R+++V +LITGHTH + +    GKWF+NPGSI+GA+S+         V PSFIL+A+QG KV+ +VYE K    V VSK EF K
Sbjct:    5 FGELVLVLGDSYVPHRAAEIPEKFQKMLVPNKIQHILCTGNLVSKEQYEDLRALAPNVHVVRGDSD-------------LETTFPDRKVVAIGQFRIGLCHGHQIVPWGDQASLSALQRKMNVXILITGHTHEYHIRTENGKWFVNPGSITGAFSATTNA-----VTPSFILMAIQGPKVVAFVYELKGGENVVVSKSEFTK 188          
The following BLAST results are available for this feature:
BLAST of NO26G01410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009830926.11.500e-6861.46hypothetical protein, variant [Aphanomyces astaci]... [more]
XP_005854083.11.900e-6883.65vacuolar protein sorting-associated protein 29, pa... [more]
XP_008876507.12.700e-6762.44hypothetical protein H310_11562 [Aphanomyces invad... [more]
XP_009830925.14.700e-6758.18hypothetical protein H257_07184 [Aphanomyces astac... [more]
CBJ48594.11.400e-6662.32similar to Vacuolar protein sorting 29 (Vesicle pr... [more]
OQR96672.16.700e-6660.78vacuolar protein sorting-associated protein 29-lik... [more]
OQR87731.12.600e-6559.31membrane coat complex retromer, subunit VPS29/PEP1... [more]
XP_012202353.19.700e-6559.80hypothetical protein SPRG_07685 [Saprolegnia paras... [more]
XP_008619955.11.300e-6459.31hypothetical protein SDRG_15557 [Saprolegnia dicli... [more]
GAY02378.11.300e-6157.43Hypothetical protein PINS_010187 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005925NSK005925Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01410.1NO26G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559214gene_7974Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101132g1gene7269Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01410.1NO26G01410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01410 ID=NO26G01410|Name=NO26G01410|organism=Nannochloropsis oceanica|type=gene|length=804bp
ATGGCGGAATTCGGTGAGTTGGTGCTAGTCCTGGGTGACATGCACATCCC
TCATCGCGCGGCAGCTATTCCAGAAAAGTTTAAACGAATGCTCGTGCCTA
ACAAGATGCAGCATGTCTTGTGCACTGgtacgtgcaagaggagggtaggg
ataggtggtaggcaaagtaaacgggtgcttattttattttgttcccttca
caattaggatgttataccctatcgatgattctcttccctttaaccgcatt
tcccccctctagGCAACCTCATCTCGCGCGAGCAACTTGATGAGCTCAAG
TCCTTGGCCCCCAACGTGCACGTTGTCCGGGGCGACATGGACGACCCGTT
CTGCTCCTCTTCCTCCTCCTTTCTCCCTTCCACCTCCTCCACCTTCCCCG
AAACCAAAGTTGTCACGATAGGCGAGCTGCGCGTTGGTCTGTGTCACGGG
CACCAGGTCTTGCCTTGGGGCGATGAGGGGGCTTTGAGTATGCTAGCTCG
AGAGCTAGACGTCGATGTCCTCATCACAGGACACACGCACATACACCAAG
TGAGCGAGCGGGGAGGGAAGTGGTTCTTGAACCCGGGCAGCATCTCAGGG
GCGTACTCCAGTTTTGAAGGCGGGAATGAAGGGCGGGAGGTAATCCCGAG
TTTTATCCTGCTGGCAGTGCAGGGGAAGAAAGTCATGTGTTATGTCTATG
AGGAGAAAGAGCCAGGGGAGGTGGAGGTCAGCAAAGTGGAGTTTGTGAAG
GGGCAGCCGGCAGCTTCAGCTGATGCAGCAGCGGCAGCAGGGGCGGGGAG
ATGA
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protein sequence of NO26G01410.1

>NO26G01410.1-protein ID=NO26G01410.1-protein|Name=NO26G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MAEFGELVLVLGDMHIPHRAAAIPEKFKRMLVPNKMQHVLCTGNLISREQ
LDELKSLAPNVHVVRGDMDDPFCSSSSSFLPSTSSTFPETKVVTIGELRV
GLCHGHQVLPWGDEGALSMLARELDVDVLITGHTHIHQVSERGGKWFLNP
GSISGAYSSFEGGNEGREVIPSFILLAVQGKKVMCYVYEEKEPGEVEVSK
VEFVKGQPAASADAAAAAGAGR*
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Synonyms
Publications