NO26G01400, NO26G01400 (gene) Nannochloropsis oceanica

Overview
NameNO26G01400
Unique NameNO26G01400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length866
Alignment locationchr26:446270..447135 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:446270..447135 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G01400 vs. NCBI_GenBank
Match: XP_005854082.1 (hypothetical protein NGA_0266502 [Nannochloropsis gaditana CCMP526] >EKU22276.1 hypothetical protein NGA_0266502 [Nannochloropsis gaditana CCMP526] >EWM23180.1 hypothetical protein Naga_100484g3 [Nannochloropsis gaditana])

HSP 1 Score: 157.5 bits (397), Expect = 1.900e-35
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = 0 
Query:    1 MESVKAAATFATSHLIRPAYYKEQFAGFSKYYYWKYIRPGSMKPLAHLMVLTGVLGYTVEWFALGQHHVAHKKAIVDKALAEHSNGH 88
            MESVKAAA+FA S+L +P+YYK+QF GF+KYYYWKYIRPGS+KPLAHLMVLTG +GY VEW+ALGQHHVAHKKAIVDKALAEH +GH
Sbjct:    1 MESVKAAASFAASNLTKPSYYKQQFEGFAKYYYWKYIRPGSIKPLAHLMVLTGCVGYAVEWYALGQHHVAHKKAIVDKALAEHGHGH 87
The following BLAST results are available for this feature:
BLAST of NO26G01400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854082.11.900e-3581.61hypothetical protein NGA_0266502 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005931NSK005931Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01400.1NO26G01400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|179820gene_7973Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01400.1NO26G01400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01400 ID=NO26G01400|Name=NO26G01400|organism=Nannochloropsis oceanica|type=gene|length=866bp
ACAGCATCATGGAGTCTGTCAAGGCAGCGGCCACCTTCGCGACCTCGCAC
TTGATCAGGCCGgtacgtctgggtatcgggtgagcaagaaggaagacagt
gataccggagggaagacatatggagtggtcggcgtctgaatgctgtcagc
ctggcaatgagcgcttaagattgcggtgcaattatcgcaatggtatctgc
ggagctggctgccagtgcagttttgtcgtgggcctttccttttgtgtccc
aggtcgtcgtcgtcatgagtagggccccgcttgtctgccggcctgacctt
cacctacttcccttcctccctcctatcgcattgtatatgtttaatattct
attcaagcccaaatcctgtgtgtctatcgccgttttgcgcctagccttaa
taattttatcctccctcaccctccctcccttctaccctccttccaatcca
accagGCGTACTATAAGGAGCAATTCGCGGGTTTCTCTAAGTACTACTAC
TGGAAGTACATTCGTCCCGGCTCCATGAAGCCCTTGGCGCACCTTATGGT
GCTGACAGGGGTGCTCGGGTACACTGTGGAATGGTTTGCGTTGGGCCAGC
ACCACGTTGCCCACAAGAAGGCCATAGTCGATAAGGCGCTGGCAGAGCAC
AGTAATGGGCATTAGATGGGGAAGGGGAGATAGGGAGAGGGTACGTTACT
TTGGTGTAAGAGGTAGGAGGTTTGAAGGGGGTTCGGTAGTTGACGAGTAG
GGGAAGTAAGAAGGCGAGAAAACGGAGGGAAAAGAGAAGAGTCGAGACGA
CGACGAAGAACTAGAAACTTACACAGGATTAATAGAAAGGGAAAAACACG
AAAAACTTGGGCGTGC
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protein sequence of NO26G01400.1

>NO26G01400.1-protein ID=NO26G01400.1-protein|Name=NO26G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MESVKAAATFATSHLIRPAYYKEQFAGFSKYYYWKYIRPGSMKPLAHLMV
LTGVLGYTVEWFALGQHHVAHKKAIVDKALAEHSNGH*
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Synonyms
Publications