NO26G01380, NO26G01380 (gene) Nannochloropsis oceanica

Overview
NameNO26G01380
Unique NameNO26G01380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length744
Alignment locationchr26:441670..442413 -

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Properties
Property NameValue
Description2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:441670..442413 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0016114terpenoid biosynthetic process
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036571MECDP_synthase_sf
IPR003526MECDP_synthase
Homology
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_005854081.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526] >EKU22275.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 302.8 bits (774), Expect = 1.000e-78
Identity = 147/171 (85.96%), Postives = 157/171 (91.81%), Query Frame = 0
Query:   77 SAYSEPTPLASDPPFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV 248
            SAYSEP P A+DPPFRIGHGFDIHRLE GLPLVIGGVKI+FEKGSAAHSDGDALYHSVTDAILGAIG+PDIGQLFPD DPKWKGA+S+ F++EA RLMTLRGY+IGNVDVTLILQKPKV  IKPQMK N+V LL T   RVNIKARTHE+VDSVGESRSWVVHVVILLEKV
Sbjct:   71 SAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFEKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: EWM23179.1 (2-c-methyl-d-erythritol -cyclodiphosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 2.200e-78
Identity = 146/171 (85.38%), Postives = 157/171 (91.81%), Query Frame = 0
Query:   77 SAYSEPTPLASDPPFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV 248
            SAYSEP P A+DPPFRIGHGFDIHRLE GLPLVIGGVKI+F+KGSAAHSDGDALYHSVTDAILGAIG+PDIGQLFPD DPKWKGA+S+ F++EA RLMTLRGY+IGNVDVTLILQKPKV  IKPQMK N+V LL T   RVNIKARTHE+VDSVGESRSWVVHVVILLEKV
Sbjct:   71 SAYSEPVPQATDPPFRIGHGFDIHRLEAGLPLVIGGVKIEFDKGSAAHSDGDALYHSVTDAILGAIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEKV 241          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: CBJ31080.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor [Ectocarpus siliculosus])

HSP 1 Score: 233.8 bits (595), Expect = 5.800e-58
Identity = 111/164 (67.68%), Postives = 132/164 (80.49%), Query Frame = 0
Query:   84 PLASDPPFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV 248
            P   +P   IGHGFDIHRL  G  LVIGGV I +E G+ AHSDGD +YHSV DAILGA+G+PDIGQLFPDNDP W GA+SS F++EA+R M  RG+++GNVDVTLILQKPKVM IKP M++N+V LL+T+  RVN+KARTHE VDSVGE R+   HVV+LLEKV
Sbjct:    4 PDLEEPAMLIGHGFDIHRLVEGKELVIGGVNIPYELGADAHSDGDVIYHSVVDAILGALGLPDIGQLFPDNDPDWSGADSSIFMEEAYRRMDERGFRVGNVDVTLILQKPKVMDIKPLMRDNIVRLLRTSLGRVNVKARTHEKVDSVGEGRAMACHVVVLLEKV 167          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_018811204.1 (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Juglans regia])

HSP 1 Score: 221.1 bits (562), Expect = 3.900e-54
Identity = 107/183 (58.47%), Postives = 135/183 (73.77%), Query Frame = 0
Query:   68 SKGTTTALSSAYSEPTPLASDP----PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEK 247
            S  TTT+L +  +   PL+S P    PFR+GHGFD+HRLEPG PL+IGG+ I  ++G  AHSDGD L H V DAILGA+G+PDIGQ+FPDNDPKWKGA SS F+KEA RLM   GY++GN+D TLILQ+PKV   K  +K N+ +L+   P  +N+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   49 SASTTTSLEAGQA---PLSSMPSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAPSSVFIKEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIKANLSALIGADPSVINLKAKTHEKVDSLGENRSIAAHTVVLLMK 228          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: CEM14921.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 220.3 bits (560), Expect = 6.600e-54
Identity = 99/160 (61.88%), Postives = 128/160 (80.00%), Query Frame = 0
Query:   87 SDPPFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEK 247
            S+P  RIGHG+DIHRL PGL L +GGVKID+EKG+ AHSDGD ++HS+ DA+ GA+ +PDIGQ FPD DPKWK A+S  F+++A R M  RGY++GNVDVTLIL++PKV  +K  MK+N+  L++  P +VNIKARTHE VDSVGE+R+   HVV+LLE+
Sbjct:   56 SEPLMRIGHGYDIHRLAPGLQLTVGGVKIDYEKGTEAHSDGDVIFHSLCDAVFGALALPDIGQQFPDTDPKWKDASSDLFMEDAWRQMEERGYRLGNVDVTLILERPKVKDLKAGMKDNICRLMRVPPSQVNIKARTHEKVDSVGENRAIECHVVVLLER 215          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_021754239.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Chenopodium quinoa])

HSP 1 Score: 219.5 bits (558), Expect = 1.100e-53
Identity = 105/172 (61.05%), Postives = 129/172 (75.00%), Query Frame = 0
Query:   80 SEPTPLASDP-----PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEK 247
            S+PT L++       PFR+GHGFD+HRLEPG PL+IGG+ I  +KG  AHSDGD L H V DAILGA+G+PDIGQLFPDNDPKWKGA SS F+KEA RLM   GY++GN+D TLILQ+PKV   K  +K N+ +LL   P  +N+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   68 SQPTSLSNSKPSKSLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDKGCEAHSDGDVLLHCVVDAILGALGLPDIGQLFPDNDPKWKGAASSVFIKEAVRLMDEAGYELGNLDATLILQRPKVSPHKEAIKANLSALLGVDPSVLNLKAKTHEKVDSLGENRSIAAHTVVLLMK 239          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_010676414.1 (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Beta vulgaris subsp. vulgaris] >KMT12032.1 hypothetical protein BVRB_5g099910 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 109/188 (57.98%), Postives = 131/188 (69.68%), Query Frame = 0
Query:   69 KGTTTALSSAYSEPTPLASDP----------PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEK 247
            K T +   SA S P    S P          PFR+GHGFD+HRLEPG PL+IGG+ I  ++G  AHSDGD L H V DAILGA+G+PDIGQ+FPDNDPKWKGA SS F+KEA RLM   GY+IGN+D TLILQ+PKV   K  +K N+ +LL   P  VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   41 KPTISFSISAVSTPIAQTSQPNSSSNPSKTLPFRVGHGFDLHRLEPGYPLIIGGIDIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKVSPHKEAIKANLSALLGADPTAVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 228          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_018829344.1 (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Juglans regia])

HSP 1 Score: 219.2 bits (557), Expect = 1.500e-53
Identity = 105/178 (58.99%), Postives = 132/178 (74.16%), Query Frame = 0
Query:   68 SKGTTTALSSAYSEPTPLASDP-PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILL 245
            S  TT+AL    +  +  ++   PFR+GHGFD+HRLEPG PL+IGG+ I  ++G  AHSDGD L H V DAILGA+G+PDIGQ+FPDNDPKWKGA SS F+KEA RLM   GY++GN+D TLILQ+PKV   K  +K N+ +LL   P  VN+KA+THENVDS+GE+RS   H V+LL
Sbjct:   49 SAATTSALEGGQAPLSATSAKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDNDPKWKGAPSSVFIKEAVRLMQETGYELGNLDATLILQRPKVSPHKEAIKANLSALLGADPSVVNLKAKTHENVDSLGENRSIAAHTVVLL 226          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: XP_012854324.1 (PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Erythranthe guttata] >EYU23425.1 hypothetical protein MIMGU_mgv1a012992mg [Erythranthe guttata])

HSP 1 Score: 218.4 bits (555), Expect = 2.500e-53
Identity = 105/183 (57.38%), Postives = 131/183 (71.58%), Query Frame = 0
Query:   68 SKGTTTALSSAYSEPTPLASDP----PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEK 247
            S   + A S+  SEP   A+ P    PFR+GHGFD+HRLEPG PL+IGG+ I  ++G  AHSDGD L H V DAILGA+G+PDIGQ+FPD DPKWKGA SS F++EA RLM   GY++GN+D TLILQ+PKV   K  ++ N+  LL   P  VN+KA+THE VDS+GE+RS   H V+LL K
Sbjct:   51 SVAASAATSAVESEPQTAAASPAKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDTDPKWKGAASSVFIEEAVRLMHEAGYELGNLDATLILQRPKVSPHKEVIRSNLCKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMK 233          
BLAST of NO26G01380 vs. NCBI_GenBank
Match: KNA25489.1 (hypothetical protein SOVF_006270 [Spinacia oleracea])

HSP 1 Score: 218.4 bits (555), Expect = 2.500e-53
Identity = 101/158 (63.92%), Postives = 124/158 (78.48%), Query Frame = 0
Query:   90 PFRIGHGFDIHRLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQLFPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKPQMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV 248
            PFR+GHGFD+HRLEPG PL+IGG+ I  ++G  AHSDGD L H V DAILGA+G+PDIGQLFPDNDPKWKGA SS F+KEA RLM   GY++GN+D TLILQ+PKV   K  +K+N+ +LL   P  VN+KA+THE VDS+GE+RS   H V+LL K+
Sbjct:   81 PFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQLFPDNDPKWKGAASSIFIKEAVRLMHEAGYELGNLDATLILQRPKVSPHKEAIKDNLSALLGVDPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMKM 238          
The following BLAST results are available for this feature:
BLAST of NO26G01380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854081.11.000e-7885.962-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
EWM23179.12.200e-7885.382-c-methyl-d-erythritol -cyclodiphosphate synthase... [more]
CBJ31080.15.800e-5867.682-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
XP_018811204.13.900e-5458.47PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
CEM14921.16.600e-5461.88unnamed protein product [Vitrella brassicaformis C... [more]
XP_021754239.11.100e-5361.052-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
XP_010676414.11.500e-5357.98PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
XP_018829344.11.500e-5358.99PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
XP_012854324.12.500e-5357.38PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphos... [more]
KNA25489.12.500e-5363.92hypothetical protein SOVF_006270 [Spinacia olerace... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01380.1NO26G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559208gene_7970Nannochloropsis oceanica (N. oceanica CCMP1779)gene
MCSgene7272Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01380.1NO26G01380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01380 ID=NO26G01380|Name=NO26G01380|organism=Nannochloropsis oceanica|type=gene|length=744bp
ATGCTCAGCCCGCCAGCCTCCTCCCAGCTCCTCCTCCTTGCCTGTTGCCT
CGTCTCCTGCACCACAGCCTTCTTGAGGCCAGCGACCACCGCTCTCAGTA
CGCGGCTGTTGCTGTTGCAAGGCCGCGGCAGTGGCAGCAAGGGTGTGAGT
GGCAGCGAAAGTAAAATGACGACGACGACCACTATTACAGCAGTGGGGAG
GTCAAAAGGGACGACGACGGCGCTTTCCTCCGCATACTCGGAACCCACCC
CCCTGGCCAGTGACCCGCCCTTCCGCATAGGCCATGGATTCGACATCCAC
AGACTCGAGCCTGGCCTACCTTTGGTGATTGGGGGCGTAAAGATCGACTT
TGAAAAGGGGTCTGCTGCCCACTCCGACGGAGATGCTCTCTACCATTCAG
TGACAGACGCGATTCTCGGTGCGATAGGCATGCCCGACATCGGACAACTC
TTCCCCGACAACGACCCCAAATGGAAGGGCGCAAATTCCTCGGCCTTCCT
GAAGGAAGCCCACAGGCTAATGACGCTTCGAGGGTACAAAATTGGGAATG
TGGACGTGACGTTGATATTGCAAAAACCAAAGGTCATGGGGATTAAGCCT
CAAATGAAAGAGAATGTGGTAAGTCTGCTTCAAACAACCCCGGACCGTGT
GAATATTAAAGCGAGGACGCACGAAAATGTGGATAGTGTCGGGGAGAGTA
GGAGTTGGGTGGTGCATGTGGTGATATTGCTTGAAAAGGTTTAA
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protein sequence of NO26G01380.1

>NO26G01380.1-protein ID=NO26G01380.1-protein|Name=NO26G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MLSPPASSQLLLLACCLVSCTTAFLRPATTALSTRLLLLQGRGSGSKGVS
GSESKMTTTTTITAVGRSKGTTTALSSAYSEPTPLASDPPFRIGHGFDIH
RLEPGLPLVIGGVKIDFEKGSAAHSDGDALYHSVTDAILGAIGMPDIGQL
FPDNDPKWKGANSSAFLKEAHRLMTLRGYKIGNVDVTLILQKPKVMGIKP
QMKENVVSLLQTTPDRVNIKARTHENVDSVGESRSWVVHVVILLEKV*
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Synonyms
Publications