NO26G01320, NO26G01320 (gene) Nannochloropsis oceanica

Overview
NameNO26G01320
Unique NameNO26G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr26:425486..426625 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:425486..426625 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G01320 vs. NCBI_GenBank
Match: EWM23156.1 (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.500e-63
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:  166 KQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVFNLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENMFGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVRFETNYVRDWPDDHN 315
            K + K+KE + APF++EALLDG +A ++YTGE+ FNL G SEDVIAPWSVDGFEID+PDWRPQP Q Y IVDP+V+EQLGKIENMFGASL+LVST  G+WRFLY GN+RNLIGAEAWTKLLL EDL+I GV+EVRFETNYVRDWPDDHN
Sbjct:  161 KGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 309
[Close]
BLAST of NO26G01320 vs. NCBI_GenBank
Match: EWM23157.1 (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.500e-63
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:  166 KQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVFNLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENMFGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVRFETNYVRDWPDDHN 315
            K + K+KE + APF++EALLDG +A ++YTGE+ FNL G SEDVIAPWSVDGFEID+PDWRPQP Q Y IVDP+V+EQLGKIENMFGASL+LVST  G+WRFLY GN+RNLIGAEAWTKLLL EDL+I GV+EVRFETNYVRDWPDDHN
Sbjct:  170 KGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 318
The following BLAST results are available for this feature:
BLAST of NO26G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23156.11.500e-6377.18hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
EWM23157.11.500e-6377.18hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005938NSK005938Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01320.1NO26G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100043g3gene7278Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01320.1NO26G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01320 ID=NO26G01320|Name=NO26G01320|organism=Nannochloropsis oceanica|type=gene|length=1140bp
ATGAGTTGCAACAGGCGCTCATCACCATCAGCGGGGCTATCTTTGCTCGC
CATCGgtaagtcacacaatctgaaaaccagataaattgcgtacagaaatt
attacagagagcgagtgagttgggtgtcgtgtctctgcatttgagcgggg
cgtcgatgtggacacaaaaaggcccaggggaaaaacggagcggaagttga
cgttgggcctccacactcacccacctctccccccatcccccaattcacag
GAACCTTGCTACTTCTCCTGTCCCCCGTCCCATCCCTTGCCTTTCTAATA
GTTGGTCTACAAAAAAGAGGAGTGGCCGTGGTAGGAAGTGGTGGTGCTCG
TATTTCCACCACCACAAGCACTGGCAGCACCAACAGTAGAAGACAGACAG
ATCGAAGTATTAAGGCTTTGAGTGTGCTCTCAGCAGCCACCAAGGCAGGA
AAGGACGGGGAAGGCAGCAAGAAAAAGGTTCCTCCTACTCGCAAAAAGAC
CACGACACCCAAAAAGGGCAGCAGCAAAGCCAGCGCTTCCTCCCCGGCTT
TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CCCCGTCTCTGAAAAAGCTATATCTGCAAAACAGCCGGCAAAGCAACAAC
ACAAAATCAAGGAAGCGATGGAAGCACCCTTCTATGAAGAAGCCCTGCTG
GACGGGAAGCAAGCCAGCGAGATGTACACTGGCGAGAAGGTCTTCAATCT
GAGGGGGCCGAGTGAGGACGTAATAGCGCCTTGGAGTGTGGATGGCTTTG
AGATCGACATCCCGGACTGGCGCCCGCAGCCGGTGCAGCACTACGAGATT
GTGGACCCGTCGGTGCTGGAGCAGCTGGGGAAGATCGAGAACATGTTTGG
GGCGAGCTTGAAACTGGTATCGACGCATAAGGGTGTGTGGCGGTTTCTTT
ACTTAGGGAACATTCGGAATCTGATCGGGGCCGAGGCCTGGACCAAGCTC
TTGCTGCAGGAGGACTTGAGGATTGAGGGGGTGAAAGAGGTGCGGTTTGA
GACCAACTACGTAAGAGATTGGCCGGACGATCACAATTAA
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protein sequence of NO26G01320.1

>NO26G01320.1-protein ID=NO26G01320.1-protein|Name=NO26G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MSCNRRSSPSAGLSLLAIGTLLLLLSPVPSLAFLIVGLQKRGVAVVGSGG
ARISTTTSTGSTNSRRQTDRSIKALSVLSAATKAGKDGEGSKKKVPPTRK
KTTTPKKGSSKASASSPAFSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SFPVSEKAISAKQPAKQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVF
NLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENM
FGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVR
FETNYVRDWPDDHN*
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Synonyms
Publications