NO26G01320, NO26G01320 (gene) Nannochloropsis oceanica

Overview
NameNO26G01320
Unique NameNO26G01320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr26:425486..426625 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:425486..426625 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO26G01320 vs. NCBI_GenBank
Match: EWM23156.1 (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.500e-63
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:  166 KQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVFNLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENMFGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVRFETNYVRDWPDDHN 315
            K + K+KE + APF++EALLDG +A ++YTGE+ FNL G SEDVIAPWSVDGFEID+PDWRPQP Q Y IVDP+V+EQLGKIENMFGASL+LVST  G+WRFLY GN+RNLIGAEAWTKLLL EDL+I GV+EVRFETNYVRDWPDDHN
Sbjct:  161 KGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 309
[Close]
BLAST of NO26G01320 vs. NCBI_GenBank
Match: EWM23157.1 (hypothetical protein Naga_100043g3 [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 1.500e-63
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 0 
Query:  166 KQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVFNLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENMFGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVRFETNYVRDWPDDHN 315
            K + K+KE + APF++EALLDG +A ++YTGE+ FNL G SEDVIAPWSVDGFEID+PDWRPQP Q Y IVDP+V+EQLGKIENMFGASL+LVST  G+WRFLY GN+RNLIGAEAWTKLLL EDL+I GV+EVRFETNYVRDWPDDHN
Sbjct:  170 KGKRKVKEQVPAPFFDEALLDGSRARDVYTGEQKFNLMGQSEDVIAPWSVDGFEIDLPDWRPQPAQRYRIVDPAVMEQLGKIENMFGASLRLVSTEDGIWRFLYSGNVRNLIGAEAWTKLLLIEDLKIAGVREVRFETNYVRDWPDDHN 318
The following BLAST results are available for this feature:
BLAST of NO26G01320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23156.11.500e-6377.18hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
EWM23157.11.500e-6377.18hypothetical protein Naga_100043g3 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005938NSK005938Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01320.1NO26G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100043g3gene7278Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01320.1NO26G01320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01320 ID=NO26G01320|Name=NO26G01320|organism=Nannochloropsis oceanica|type=gene|length=1140bp
ATGAGTTGCAACAGGCGCTCATCACCATCAGCGGGGCTATCTTTGCTCGC
CATCGgtaagtcacacaatctgaaaaccagataaattgcgtacagaaatt
attacagagagcgagtgagttgggtgtcgtgtctctgcatttgagcgggg
cgtcgatgtggacacaaaaaggcccaggggaaaaacggagcggaagttga
cgttgggcctccacactcacccacctctccccccatcccccaattcacag
GAACCTTGCTACTTCTCCTGTCCCCCGTCCCATCCCTTGCCTTTCTAATA
GTTGGTCTACAAAAAAGAGGAGTGGCCGTGGTAGGAAGTGGTGGTGCTCG
TATTTCCACCACCACAAGCACTGGCAGCACCAACAGTAGAAGACAGACAG
ATCGAAGTATTAAGGCTTTGAGTGTGCTCTCAGCAGCCACCAAGGCAGGA
AAGGACGGGGAAGGCAGCAAGAAAAAGGTTCCTCCTACTCGCAAAAAGAC
CACGACACCCAAAAAGGGCAGCAGCAAAGCCAGCGCTTCCTCCCCGGCTT
TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CCCCGTCTCTGAAAAAGCTATATCTGCAAAACAGCCGGCAAAGCAACAAC
ACAAAATCAAGGAAGCGATGGAAGCACCCTTCTATGAAGAAGCCCTGCTG
GACGGGAAGCAAGCCAGCGAGATGTACACTGGCGAGAAGGTCTTCAATCT
GAGGGGGCCGAGTGAGGACGTAATAGCGCCTTGGAGTGTGGATGGCTTTG
AGATCGACATCCCGGACTGGCGCCCGCAGCCGGTGCAGCACTACGAGATT
GTGGACCCGTCGGTGCTGGAGCAGCTGGGGAAGATCGAGAACATGTTTGG
GGCGAGCTTGAAACTGGTATCGACGCATAAGGGTGTGTGGCGGTTTCTTT
ACTTAGGGAACATTCGGAATCTGATCGGGGCCGAGGCCTGGACCAAGCTC
TTGCTGCAGGAGGACTTGAGGATTGAGGGGGTGAAAGAGGTGCGGTTTGA
GACCAACTACGTAAGAGATTGGCCGGACGATCACAATTAA
back to top

protein sequence of NO26G01320.1

>NO26G01320.1-protein ID=NO26G01320.1-protein|Name=NO26G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MSCNRRSSPSAGLSLLAIGTLLLLLSPVPSLAFLIVGLQKRGVAVVGSGG
ARISTTTSTGSTNSRRQTDRSIKALSVLSAATKAGKDGEGSKKKVPPTRK
KTTTPKKGSSKASASSPAFSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SFPVSEKAISAKQPAKQQHKIKEAMEAPFYEEALLDGKQASEMYTGEKVF
NLRGPSEDVIAPWSVDGFEIDIPDWRPQPVQHYEIVDPSVLEQLGKIENM
FGASLKLVSTHKGVWRFLYLGNIRNLIGAEAWTKLLLQEDLRIEGVKEVR
FETNYVRDWPDDHN*
back to top
Synonyms
Publications