NO26G01270, NO26G01270 (gene) Nannochloropsis oceanica

Overview
NameNO26G01270
Unique NameNO26G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr26:410591..412129 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:410591..412129 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008610lipid biosynthetic process
GO:0055114oxidation-reduction process
GO:0055114oxidation-reduction process
GO:0008610lipid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0016491oxidoreductase activity
GO:0016491oxidoreductase activity
GO:0005506iron ion binding
Vocabulary: INTERPRO
TermDefinition
IPR006694Fatty_acid_hydroxylase
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO26G01270 vs. NCBI_GenBank
Match: ORY40481.1 (hypothetical protein BCR33DRAFT_719457 [Rhizoclosmatium globosum])

HSP 1 Score: 117.9 bits (294), Expect = 8.600e-23
Identity = 72/226 (31.86%), Postives = 116/226 (51.33%), Query Frame = 0
Query:   72 VVCVSLVVSHLLMVLFIAFHDISGRWDKYSLKYQ--RSSWRTYAQHAPSFFFDVGVLLAPALLVFGYAYDAVLYEPLLPHGDWQQDGVRVAALLGGATINNVINRLWAMGVHWLMHESKILYRAVHKRHHCQIRDFCALSAWQDSTLEFVLMEVFGVFLFAQLFNPLPWHFHVLFALINGLGAAIDHSAFYIPGTLIDGRYHWDHHLRIDYNFSELEFLDSMFGTL 296
            ++C  L VS+       AFHD++G    Y L+    R +W  Y  + P    ++ VL    + +   A    + +P    G   QD + +        I  VI + W  GVH+ +H +  LY+ +HK HH  +    +LSAW D+  E+++ME+ G ++   L  P+ +    ++ +  G  ++++HS FYI  TL D RYHW HH+  + NF+E + LD MFGTL
Sbjct:    8 LICSCLWVSYFATGFAFAFHDVNGALQAYDLRKNKPRRTWAHYLANMPKQLSNLFVLFPVCMHILVEARADTITKPFRDIG--VQDAINL-------VIGYVIQQSWLFGVHYALH-TPFLYKRIHKYHHVPLAYVHSLSAWTDAYFEYIVMEL-GSYVAMILLAPMHYSILAVYFVYLGFSSSVEHSGFYINATL-DSRYHWKHHVLPNCNFAEWDVLDWMFGTL 221          
BLAST of NO26G01270 vs. NCBI_GenBank
Match: KOO27544.1 (hypothetical protein Ctob_009639 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 111.7 bits (278), Expect = 6.200e-21
Identity = 74/253 (29.25%), Postives = 122/253 (48.22%), Query Frame = 0
Query:   62 EMERAVWFSGVVCVSLVVSHLLMVLFIAFHDISGRWDKYSL---KYQRSSWRTYAQHAPSFFFDVGVLLAPALL-VFGYAYDAVLYEPLLPHGDWQQDGVRVAALLGGATINNVINRLWAMGVHWLMHESKILYRAVHKRHHCQIRDFCALSAWQDSTLEFVLMEVFGVFLFAQLFNPLPWHFHVLFALINGLGAAIDHSAF---------YIPGTLIDGRYHWDHHLRIDYNFSELEFLDSMFGTLYTHHHP 302
            E+   +  +G  C+ +VV+HL    +IA++D+SGRW +Y+L     ++   + Y   A +F  DV +++ P L  +     D ++          Q D V +  L         I R+WA   H ++H + ++Y+  HKRHH ++    A  AW D  +E+ +ME+ G+     LF P    FH +F   +   AA DHS F         +      D  YH+ HH     N++E+E++D +FGT +T   P
Sbjct:   14 ELPSPLALAGSFCIVMVVTHLATAGYIAWNDLSGRWSQYTLCKKSDRKRHPKLYVDGALNFLKDVTLIMLPGLTWICQVRGDDIV--------SAQDDNVLIGVL--KICAGYTIGRIWAAFAHRILH-TALMYKHFHKRHHMRVDQLVATGAWLDHPVEYAVMELPGLLCPLVLF-PTRLAFHYMFFFFHAFSAATDHSGFTFTKENGAGWFFRNFFDSEYHYYHHATSTVNYAEMEWIDYLFGTHHTQVLP 254          
BLAST of NO26G01270 vs. NCBI_GenBank
Match: XP_002183632.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44814.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-17
Identity = 71/243 (29.22%), Postives = 112/243 (46.09%), Query Frame = 0
Query:   66 AVWFSGVVCVSLVVSHLLMVLFIAFHDISGRWDKYSLKYQRSS-----WRTYAQHAPSFFFDVGVLLAPAL-LVFGYAYDAVLYEPLLPHGDWQQDGVRVAALLGGATINNVINRLWAMGVHWLMHESKILYRAVHKRHHCQIRDFCALSAWQDSTLEFVLMEVFGVFLFAQLFNPLPWHFHVLFALINGLGAAIDHSAFYIPGTL---IDGRYHWDHHLRIDYNFSELEFLDSMFGTLYTHH 300
            A W +    + L++SH + V  + + D SG+W+ Y L   RS         Y      F  D+ +L  P +   F    D + + P           +    LL G      + ++WA  VH+ +H    L+   H+RHH   ++  A +AW DS +E+ +ME+   F    L  P  +++H++    +G   A  HS F  PG L    +G YH+ HH  +  N++ELEFLD + G   THH
Sbjct:    8 AFWQAIGAALILMLSHCICVGIVMYFDFSGKWEAYELSKSRSKSLSDRMYDYQIGIRKFCLDLVLLFVPCIAFCFWCKGDKIAHSP-------DSMFLSFVKLLTG----YALGKIWAFLVHYGLHFP--LFYQFHRRHHRNPKNLVASAAWDDSFVEYAIMEI-PSFAITLLLFPTHYYWHLIHFAWHGWDGACGHSGFAAPGLLGACFNGEYHYHHHALLTVNYAELEFLDKLCG---THH 233          
The following BLAST results are available for this feature:
BLAST of NO26G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
ORY40481.18.600e-2331.86hypothetical protein BCR33DRAFT_719457 [Rhizoclosm... [more]
KOO27544.16.200e-2129.25hypothetical protein Ctob_009639 [Chrysochromulina... [more]
XP_002183632.12.400e-1729.22predicted protein [Phaeodactylum tricornutum CCAP ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005944NSK005944Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01270.1NO26G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600685gene_7956Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01270.1NO26G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01270 ID=NO26G01270|Name=NO26G01270|organism=Nannochloropsis oceanica|type=gene|length=1539bp
ATGGATATGGGTGCAGCATGGCTGCGGCAATGGCCACATGCATTGCCCCT
TTCCGAGCTCCTCTTGGGGACCTATGACGGAGGCTGTCAAGCGACAGGAG
AAAGAGGGAATGAAGGAGGAGAGGAAGGAAGAAGAAGAGCGGAAAAAGTT
TGGGAATGGGTGTCGACGCTCCTGGCCTCGCCGGAGATGGAGCGCGCCGT
GTGGTTTTCGGGTGTAGTGTGCGTGTCCCTGGTGGTGAGCCACCTGTTGA
TGGTGCTTTTCATCGCCTTTCACGACATCTCGGGCCGTTGGGACAAGTAT
AGCCTCAAGTACCAGCGCAGCAGCTGGAGGACGTATGCGCAGCACGCGCC
GTCCTTCTTTTTTGACGTGGGCGTGCTCCTGGCCCCGGCCCTGCTGGTTT
TCGGGTACGCCTACGATGCCGTGCTGTACGAGCCGCTGCTGCCGCACGGG
GACTGGCAACAGGACGGTGTGCGCGTGGCTGCACTTTTGGGCGGGGCAAC
CATAAACAATGTGATCAACCGCCTCTGGGCCATGGGCGTGCATTGGCTCA
TGCACGAGAGCAAGATCCTGTATCGGGCCGTGCACAAGCGGCACCACTGC
CAGATCCGCGACTTCTGCGCCTTGTCTGCCTGGCAGGACTCTACACTCGA
ATTCGTGCTGATGGAGGTCTTCGGCGTTTTCCTCTTTGCCCAGCTCTTCA
ACCCCTTGCCCTGGCACTTCCACGTCCTCTTCGCCCTCATCAACGGCCTT
GGTGCCGCGATAGATCACTCGGCTTTTTACATCCCCGGCACCTTGATCGA
TGGCAGgtacggttgaataaaaagggataataccaaagggtctgggagga
agaacaagtagcggcaagataactttagagtggataataagtgttcgaca
gcgccctttgtcatttacctctccccccctctcttttcaccctcccctag
GTACCACTGGGATCACCACCTGCGCATCGACTACAACTTTTCGGAGCTGG
AGTTTCTGGACTCTATGTTCGGGACACTTTACACCCACCACCATCCCCTC
CTCTCCTCAAAGGCCGCTGTCGAGCTGCAGCAGTCACCCCGCCTGCGCCG
ACGTAAGCAACCACACGCGCTCGACGAAGATCAGCAGCGACTGCATCGGC
AACTCAAGGAGGAGAAGAAGGAGAGCAGTGACTATAAAGTGGAGACGCAG
CAGCAGCAGCAGCAGCAGCAACGGTGGCAAGAGGTGGAAAAAGAACAAAA
AGGGAAAGAAGAGGAAAGAGAGACCTGCAATTGCGTTGATGGCGAGTCAG
CACCCGACGTGTGCCTCCCTGAAGACGAACAGTTAAGACCAAACACGCAA
GTAGAGAGCAGTATCAACAGCAGCAGCAACAGCAACAGTAACAACTGCTA
TGATAGCGTTAACAGTAAGAGCAGCAGTAGAAGTCGGGAGGGGGAACTAC
CAGAGAGCGATACGCAATCATACGACCGAAAAAATGCTGCGTACCCCTTC
TCTTTCGCCGACTCCCCGAAAGCTAAGCCGTGGTCGTGA
back to top

protein sequence of NO26G01270.1

>NO26G01270.1-protein ID=NO26G01270.1-protein|Name=NO26G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MDMGAAWLRQWPHALPLSELLLGTYDGGCQATGERGNEGGEEGRRRAEKV
WEWVSTLLASPEMERAVWFSGVVCVSLVVSHLLMVLFIAFHDISGRWDKY
SLKYQRSSWRTYAQHAPSFFFDVGVLLAPALLVFGYAYDAVLYEPLLPHG
DWQQDGVRVAALLGGATINNVINRLWAMGVHWLMHESKILYRAVHKRHHC
QIRDFCALSAWQDSTLEFVLMEVFGVFLFAQLFNPLPWHFHVLFALINGL
GAAIDHSAFYIPGTLIDGRYHWDHHLRIDYNFSELEFLDSMFGTLYTHHH
PLLSSKAAVELQQSPRLRRRKQPHALDEDQQRLHRQLKEEKKESSDYKVE
TQQQQQQQQRWQEVEKEQKGKEEERETCNCVDGESAPDVCLPEDEQLRPN
TQVESSINSSSNSNSNNCYDSVNSKSSSRSREGELPESDTQSYDRKNAAY
PFSFADSPKAKPWS*
back to top
Synonyms
Publications