NO26G01160, NO26G01160 (gene) Nannochloropsis oceanica

Overview
NameNO26G01160
Unique NameNO26G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length438
Alignment locationchr26:376919..377356 +

Link to JBrowse

Properties
Property NameValue
DescriptionLipase, class 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:376919..377356 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Homology
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BLAST of NO26G01160 vs. NCBI_GenBank
Match: EWM23148.1 (Lipase, class 3 [Nannochloropsis gaditana])

HSP 1 Score: 137.9 bits (346), Expect = 2.500e-29
Identity = 71/104 (68.27%), Postives = 86/104 (82.69%), Query Frame = 0 
Query:   42 RHPQPRRHVCKAIIYYVATLDVLLLFHSMRNYLTCGEGRELLQLKQDTQHDELERQRVAFNSLALVITNLAAFGMFTYEALTNGTHLLDRATWTASIAHSRQAS 146
            R+ +  R + +A++YYV+  DV+LL   + NYLT  EGRELLQL+Q+T HDELER+ VAFNSLALV+TNLAAFGMFTYEALT G  +L+RATWTASIAHSRQAS
Sbjct:  324 RNCRSLRFLRQAVVYYVSASDVVLLLFLVENYLTRKEGRELLQLQQNTHHDELERRVVAFNSLALVLTNLAAFGMFTYEALTYGVQILNRATWTASIAHSRQAS 427
The following BLAST results are available for this feature:
BLAST of NO26G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23148.12.500e-2968.27Lipase, class 3 [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005954NSK005954Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01160.1NO26G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100043g24gene7295Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01160.1NO26G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01160 ID=NO26G01160|Name=NO26G01160|organism=Nannochloropsis oceanica|type=gene|length=438bp
ATGCTACCAACAAGGGGTGAAAGCAGTGGCAGTCAAGGATGGCTGTCCGA
AGCCCTCAGTGACGCCACGCCAGTCAAGGATGGCTGTCCGAAGCCCTCAG
TGACGCCACGCCACGGCCGCAAGCGACATCCGCAGCCTCGTCGACACGTG
TGCAAGGCCATCATCTACTACGTGGCGACCTTGGACGTGCTTCTGCTTTT
TCATTCGATGCGAAACTACCTGACCTGTGGGGAAGGCCGGGAACTGCTCC
AGCTGAAACAAGACACCCAACACGACGAGCTGGAGAGGCAGAGGGTGGCG
TTCAATAGCCTGGCCCTCGTAATAACCAATTTGGCCGCCTTTGGAATGTT
CACATACGAGGCGTTGACGAATGGCACTCACCTCCTAGACCGTGCGACTT
GGACGGCCTCCATTGCCCACAGCCGACAAGCCTCATAG
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protein sequence of NO26G01160.1

>NO26G01160.1-protein ID=NO26G01160.1-protein|Name=NO26G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MLPTRGESSGSQGWLSEALSDATPVKDGCPKPSVTPRHGRKRHPQPRRHV
CKAIIYYVATLDVLLLFHSMRNYLTCGEGRELLQLKQDTQHDELERQRVA
FNSLALVITNLAAFGMFTYEALTNGTHLLDRATWTASIAHSRQAS*
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Synonyms
Publications