NO26G01140, NO26G01140 (gene) Nannochloropsis oceanica

Overview
NameNO26G01140
Unique NameNO26G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2562
Alignment locationchr26:371174..373735 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:371174..373735 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH01468.1 (hypothetical protein TSOC_012642, partial [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 7.000e-14
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  131 RIVAIDPGRVNLVTALD--SQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFY----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH 301
            RIV IDPGR N++ A++  S   K+  LTR  YY++  +   K++ +SW   + D  A  S  + K    DL  A    +  H       W+   + + A+  + +Y GK++VL  F+     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  663 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 838          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH08370.1 (hypothetical protein TSOC_005131 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 7.000e-14
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  131 RIVAIDPGRVNLVTALD--SQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFY----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH 301
            RIV IDPGR N++ A++  S   K+  LTR  YY++  +   K++ +SW   + D  A  S  + K    DL  A    +  H       W+   + + A+  + +Y GK++VL  F+     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  377 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 552          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH08357.1 (hypothetical protein TSOC_005129 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 7.000e-14
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  131 RIVAIDPGRVNLVTALD--SQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFY----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH 301
            RIV IDPGR N++ A++  S   K+  LTR  YY++  +   K++ +SW   + D  A  S  + K    DL  A    +  H       W+   + + A+  + +Y GK++VL  F+     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:  324 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 499          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH08379.1 (hypothetical protein TSOC_005114 [Tetrabaena socialis])

HSP 1 Score: 89.0 bits (219), Expect = 7.000e-14
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query:  131 RIVAIDPGRVNLVTALD--SQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHY---HRLWDARCEKKRARAHMAVYAGKQKVLDVFY----AGLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH 301
            RIV IDPGR N++ A++  S   K+  LTR  YY++  +   K++ +SW   + D  A  S  + K    DL  A    +  H       W+   + + A+  + +Y GK++VL  F+     G  G      +IAYGA  F   GKGE+SVP   V + C+  + T  V E  TTK+H
Sbjct:   93 RIVVIDPGRTNIIYAVEVTSSGVKVYRLTRAQYYQESGVARGKQQATSWLRGVKDELAQLSTVSPKGA--DL-PAFLLFVATHLATSEARWEEAMKPRWAQMRLRLYGGKKRVLSRFFNEIARGQGGADSRPVVIAYGAAKFAPGGKGELSVPTSGVFKACQERFPTYLVDEFRTTKIH 268          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH00238.1 (hypothetical protein TSOC_013956 [Tetrabaena socialis])

HSP 1 Score: 83.6 bits (205), Expect = 2.900e-12
Identity = 64/235 (27.23%), Postives = 98/235 (41.70%), Query Frame = 0
Query:   73 FHNRVSTDGVSVSVFFHVAKERLKRXXXXXXXXXXXXXXXXXXXXXQGQENLQPVRERRIVAIDPGRVNLVTALD---SQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFYA----GLTGPGQAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH 301
            F   + TDGVSV +  H  + + K                         E L      R+V IDPGR N+V A++       KI  LTR  YY++  + +  ++ + W   + +  A  S  + K     L  A     +      W    + + A+  + +Y GK++V+  F++    G  G      +I YGA  F   GKGE+SVP   V + C   + T  V E  TTK+H
Sbjct:  299 FTGTIETDGVSVCI--HYMRPKRKEAEEEADDGGNEEAPKAKSKQRPTPEQLS---GSRVVVIDPGRTNIVYAVEVPPEAPPKIYRLTRSQYYQESGVVQGSQRAARWLRGVKEELAQLSTASPKGASLPLFQAFIATYLETCEVRWTEALKTRWAQQSLRLYGGKKRVVAKFFSEIARGDAGAPARPVVIGYGAAKFAPGGKGELSVPTSGVFKACRERFPTYLVDEFRTTKIH 528          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: PNH02916.1 (hypothetical protein TSOC_011071 [Tetrabaena socialis])

HSP 1 Score: 80.9 bits (198), Expect = 1.900e-11
Identity = 65/203 (32.02%), Postives = 99/203 (48.77%), Query Frame = 0
Query:  124 LQPVRER----RIVAIDPGRVNLVTALDSQTG--KIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHYH---RLWDARCEKKRARAHMAVYAGKQKVLDVFYAGLT--GPG-QAKP-IIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVHLDCGQRLNPIARR 314
            L+P  E+    RIV IDPGR N++ A++      KI  LTR  YY++  +   K++ ++W     +     S  + K    DL+ A    +  H       W+   + + A+ H+ +Y GK++VL  F+  +    PG  A+P II YGA  F   GKGE+SVP   V + C   + T  V E  +TKV+      L  +A R
Sbjct:  356 LRPTPEQLSRCRIVVIDPGRTNIIYAVEVTPDGVKIYRLTRAQYYQESGVERGKQQAANWLRGTKEELTKLSAASPKGA--DLQ-AFLVFVTTHLETSDARWEEALKPRWAQMHLRLYGGKKRVLAKFFDEIARGDPGAPARPVIIGYGAAKFAPGGKGELSVPTCGVFKACRARFPTHLVDEFRSTKVYHADDSILQGVAER 555          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: KXZ41250.1 (hypothetical protein GPECTOR_607g688 [Gonium pectorale])

HSP 1 Score: 80.5 bits (197), Expect = 2.500e-11
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 0
Query:  131 RIVAIDPGRVNL---VTALDSQTGKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHYH-----RLWDARCEKKRARAHMAVYAGKQKVLDVFYAGLTGPGQAK-----PIIAYGAGIFPHTGKGEVSVPVERVLRV-CERYYRTVY-VPEHLTTKVHLDCGQRLNPIARRTEGE 318
            R++A++ GR N+   V  LD    ++  LTR  YY +  I    R+   W   +     A S  + K       G    L+    H     +LW    + + A+  + ++ GK++ L +F  GL   G+A+      +IAYGA  F   GKGE+SVP  R+ R    R+ R VY V E  TT+VH +    L  + +R +G+
Sbjct:  268 RVLAVNLGRTNIAYVVELLDDGRLRVYRLTRAGYYRESGILGAARRAQHWLKGVRRATQALSLVSSKGA-----GLEAFLVFVRVHLETSGQLWAEMLKHRWAQERLRLHGGKKRALALFLEGLVWAGEARGDRRPVLIAYGAAGFASGGKGELSVPTTRMYRAFTHRFLRLVYLVDEFRTTRVHHEDDSVLESVHKRKKGK 464          
BLAST of NO26G01140 vs. NCBI_GenBank
Match: AAL56217.1 (unknown [White spot syndrome virus])

HSP 1 Score: 69.3 bits (168), Expect = 5.700e-8
Identity = 92/307 (29.97%), Postives = 142/307 (46.25%), Query Frame = 0
Query:   42 MDTKKFCQDAVSVKEMWDETFQVGNLRNQRV---FHNRVSTDGVSVSVFFHVAKERLKRXXXXXXXXXXXXXXXXXXXXXQGQENLQPVRERRIVAIDPGRVNLV--TALDSQTGKI---KTLTRRAYYEKG------RINECKRK--------------FSSWEDALGDINAAFSRTTMKSCCPDLRGAHRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFYAGLTGPGQAK---PIIAYGAGIFPHTGKGEVSVPVERVL--RVCERY---YRTVYVPEHLTTKVHLDCGQRLNPIAR 313
            M+ +    + +  K+ W   F V  ++  R    FH+ + TDG  VSV F        R   XXXXXXXXXXXXXXXX  + + N  P   + +V +DPGR N+V  +  D++  ++     +T + YY++       + NE  +K              + + E+ + D N   S  T K        A+ +++  HY  LW+ + +KK  +  M VY+ KQK +  F   L  P + K     IA+G   F  TG+GE      R+   ++ ER     R  +V E  T+KV   C Q LN + +
Sbjct:  164 MEERHKQSEDILYKQGWYLLFDVKKIKKLRPNWNFHS-IQTDGEGVSVLF-------SREVEXXXXXXXXXXXXXXXXGDEDRRNYPPTNAKYVVGVDPGRTNVVSCSVFDTRQKRVVRKHRMTAKQYYQESWMTDRRKANETYKKNNKEYKEALEEITRYDNGEEIINDGNGDTSTPTKKF------EAYLKVVNEHYRLLWNEKGKKKYRKNAMKVYSRKQKCISNFIDELI-PKRDKIEDYHIAFGDAKFACTGRGEQYASPARIFAKKIKERVGGDKRFTFVDEKYTSKVCHRCNQPLNMLEK 455          
The following BLAST results are available for this feature:
BLAST of NO26G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
PNH01468.17.000e-1433.52hypothetical protein TSOC_012642, partial [Tetraba... [more]
PNH08370.17.000e-1433.52hypothetical protein TSOC_005131 [Tetrabaena socia... [more]
PNH08357.17.000e-1433.52hypothetical protein TSOC_005129 [Tetrabaena socia... [more]
PNH08379.17.000e-1433.52hypothetical protein TSOC_005114 [Tetrabaena socia... [more]
PNH00238.12.900e-1227.23hypothetical protein TSOC_013956 [Tetrabaena socia... [more]
PNH02916.11.900e-1132.02hypothetical protein TSOC_011071 [Tetrabaena socia... [more]
KXZ41250.12.500e-1130.20hypothetical protein GPECTOR_607g688 [Gonium pecto... [more]
AAL56217.15.700e-829.97unknown [White spot syndrome virus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01140.1NO26G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01140.1NO26G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01140 ID=NO26G01140|Name=NO26G01140|organism=Nannochloropsis oceanica|type=gene|length=2562bp
ATGACGCTCGATACCAGAGCTCTTGGTGATCTGCTTAAGAACGTGGTGCG
GCGCAGACCCACCGCGATGACCGAGGAGGCATGGAGCGAAGCATGCCCCG
ATTGGTTGAAGCGACTGGGAGGGATGGACACCAAAAAGTTTTGCCAGGAT
GCGGTTTCGGTGAAGGAGATGTGGGACGAGACTTTTCAGGTTGGGAATCT
ACGAAACCAGCGGGTGTTTCATAATCGGGTTTCCACGGATGGTGTCTCGG
TGTCGGTCTTCTTTCACGTGGCGAAGGAGAGACTGAAGAGGGAGAAAGCG
GAGAGGGTCAGAGTGGAAAAGGAGGACGAGGAGAAGGAGATGCTGGAACG
TCAGCAGGGACAGGAAAACCTGCAGCCAGTCAGAGAGCGACGCATTGTCG
CGATCGATCCCGGTCGCGTCAACCTGGTCACGGCGTTGGACTCGCAGACG
GGTAAGATCAAGACCTTGACGCGTCGTGCGTACTACGAAAAGGGGCGGAT
CAACGAGTGCAAGAGAAAGTTTAGCTCTTGGGAGGACGCACTCGGTGACA
TCAATGCCGCCTTTTCGAGGACCACGATGAAGTCCTGCTGTCCCGACTTG
CGTGGCGCTCACAGGGAGCTGATCGTACGGCATTACCACCGATTGTGGGA
TGCCAGGTGTGAAAAGAAACGGGCGCGTGCGCATATGGCGGTGTATGCGG
GGAAGCAGAAGGTCTTGGATGTTTTTTATGCGGGCTTGACGGGGCCAGGG
CAGGCGAAGCCCATTATCGCATATGGGGCGGGGATTTTCCCGCACACAGG
CAAGGGAGAGGTGAGCGTTCCGGTGGAGAGGGTGCTCCGGGTGTGCGAAA
GGTACTACAGAACAGTGTATGTACCCGAGCACCTGACGACAAAGGTTCAC
CTCGATTGTGGGCAGCGCCTGAACCCAATTGCGAGAAGGACAGAAGGAGA
AGGAGGAGAAGGAGGAGGTGGTGGAGAAGGAGGTGGAGGAGGAGGAGGAG
GGGAAGGAGGTGGAGGAAGGGAAGGAGGAGGAGGGGAAGGAGGAGGAGGA
GGAGGGGAAGGAGGGGGAAGGGGAGGAGGAGGAGAAGGAGGAGGAGGAGG
AGGAGGGGAAGGAGGGGGAAGGGGAGGAGGAGGAGAAGGAGGAGGAGGAG
GAGGAGGGGAAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAAAGGA
GGGGGAGGAGGAGGAGGGGAAGGAGGGGGAGGAGGAGGAGGGGAAGGAGG
GGAAGGAGGGGGAGGGGAAGGAGGAGGAGGAGGGGGAGGAAGGGGAGGGG
GAAGAAGGGGAGGGGGAGGAAGGGGAGGGGGAGGAAGAAGAGGGAAAAGA
ACCCGGGCTGCGGAAGCAGCAGCAGCCGCCCAGAGGCGGCTGACCATACA
GGTGGCACGTGCTGAAGCACGAGCCCGGGCAGCAGCAGGACGAGGAGGAG
GAGGGGGAAGGGATAGCAGGATGGATACAGGAGGGGATCCTGGAAGGGTA
GGAGTGGGAGGAGTCGGGGCGGCCGGAGCGGCAACAGGAGGAGGAGGAGA
GGGAATGAGAGGAATCCCCACTATACTCTCTTTACCCGGAGAACAGGCAG
CACGAGCACTAGCAACCATTGGTAGAATTCGTGCGGCACTTGCTGGAGGA
ATGGAGAAGGGAAAGAGAAAGATAGTGAGGGCGCGCCGACGAGGGGGAAG
AGGGGGAGGTGAAGGAGGTGGAGGAGGAGGTGGTGGAGGAGGAGGAGGTG
GTGGAGGAGGAGGAGGAGGGGAAGGAGGAGGTGGTGGAGGAGGAGGAGGA
GGTGGTGGAGGAGGAGGAGGAGGAGAAGGAGGAGAAGGAGGAGGTGGTGG
AGAAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAGGAGGAGGAG
GAGAGGACAGAGGAGCAGGAGGAGGAGAAGGAGGACGAGGAGGAGGCGGA
GGAGGCGGAGGAGGCGGAGGCGGAGGAGGCGGAGGAGGAGGCATAGGAGG
AGGAGGGGGTGGAGGCGGAGGAATTAGAGGAGAAGGAGGCGGAGGAGAAC
GAGGCGGAGGCGGAGGAGAACGAGGACGAAGCAGAGGAGGAGGTCATGGG
CGGGCCATCCGAGGACTGTATTGGTGTAACACCTGTAAACAGTTCGTGTC
TCGGGACGGCAATGGGGCACGCAACATCCTGCGGGTGTACAGGAGTATGG
TCCGTGGAGAAGCTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAG
GACATGCGGACACTCTATATGTAGCCTTCCCGCTGACCTCCTCTTTTATC
TTCCTCCCCCTTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGC
CAGGTCAAAAAAACTATTAAAGTCGCTAGAAAAACTCGGACGAGAAATAA
GGGATGACAACAATTTATTGTTTGAAGGCTCCCCCTCGTATGCAAGTCCT
CGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCAG
CTCAAAAGAGCTAGGCGTACAAACACACTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTT
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protein sequence of NO26G01140.1

>NO26G01140.1-protein ID=NO26G01140.1-protein|Name=NO26G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=758bp
MTLDTRALGDLLKNVVRRRPTAMTEEAWSEACPDWLKRLGGMDTKKFCQD
AVSVKEMWDETFQVGNLRNQRVFHNRVSTDGVSVSVFFHVAKERLKREKA
ERVRVEKEDEEKEMLERQQGQENLQPVRERRIVAIDPGRVNLVTALDSQT
GKIKTLTRRAYYEKGRINECKRKFSSWEDALGDINAAFSRTTMKSCCPDL
RGAHRELIVRHYHRLWDARCEKKRARAHMAVYAGKQKVLDVFYAGLTGPG
QAKPIIAYGAGIFPHTGKGEVSVPVERVLRVCERYYRTVYVPEHLTTKVH
LDCGQRLNPIARRTEGEGGEGGGGGEGGGGGGGGEGGGGREGGGGEGGGG
GGEGGGRGGGGEGGGGGGGEGGGRGGGGEGGGGGGGEGGGGGGGGGGGKG
GGGGGGEGGGGGGGEGGEGGGGEGGGGGGGRGGGRRGGGGRGGGGRRGKR
TRAAEAAAAAQRRLTIQVARAEARARAAAGRGGGGGRDSRMDTGGDPGRV
GVGGVGAAGAATGGGGEGMRGIPTILSLPGEQAARALATIGRIRAALAGG
MEKGKRKIVRARRRGGRGGGEGGGGGGGGGGGGGGGGGGGEGGGGGGGGG
GGGGGGGGEGGEGGGGGEGGGGGGGGGGEGGGGGEDRGAGGGEGGRGGGG
GGGGGGGGGGGGGGIGGGGGGGGGIRGEGGGGERGGGGGERGRSRGGGHG
RAIRGLYWCNTCKQFVSRDGNGARNILRVYRSMVRGEARPHDLRFGQPRQ
DMRTLYM*
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Synonyms
Publications