NO26G01110, NO26G01110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G01110 vs. NCBI_GenBank
Match: EWM23174.1 (YbaB-like DNA-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 231.1 bits (588), Expect = 2.700e-57 Identity = 145/183 (79.23%), Postives = 156/183 (85.25%), Query Frame = 0 Query: 1 MRNLVLVAIALASSTSAFMVPTSGRVFGS----TSQISSSRAEGKGRMYMLFXXXXXXXXXXXXXXKPAGKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGLGAAMKEMGKGVGGQQ 180 MR L+ +A ++AS SAFMVPTSGR F S T S SR + KGR++MLFXXXXXXXXXXXXXX KLNPFDAM+KMNELATKSNTLTKDLAGT VSG+AMDGKVKVTFTGTQVPMEVEI EDAL GAAALSAALTEAMKEGH+KSV LQQSKLTAFYDELGLGAAMKEMGKG+GG Q Sbjct: 62 MRILMFLAFSMASFASAFMVPTSGRAFTSISHPTMAPSVSRGDAKGRIFMLFXXXXXXXXXXXXXXXXXXKLNPFDAMSKMNELATKSNTLTKDLAGTIVSGEAMDGKVKVTFTGTQVPMEVEIAEDALGAGAAALSAALTEAMKEGHSKSVQLQQSKLTAFYDELGLGAAMKEMGKGMGGGQ 244
BLAST of NO26G01110 vs. NCBI_GenBank
Match: XP_005786765.1 (hypothetical protein EMIHUDRAFT_352299 [Emiliania huxleyi CCMP1516] >EOD34336.1 hypothetical protein EMIHUDRAFT_352299 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8 Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 0 Query: 69 NPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165 N + + K E+ K L ++L T + A DG V V +G QVPM+V+++ED + GA A+S A++ AM+E H S+ + KL A Y E+GL Sbjct: 58 NMMETIKKAQEVGVKVKALQEELVNTEIEATAADGGVTVVISGAQVPMDVKVSEDLCSKGAEAVSDAISLAMREAHKNSMEYSKQKLGALYAEIGL 153
BLAST of NO26G01110 vs. NCBI_GenBank
Match: KOO23218.1 (hypothetical protein Ctob_008209, partial [Chrysochromulina sp. CCMP291]) HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8 Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0 Query: 66 GKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165 G LN + + K ++ K L ++LA T + + DG V +G QVP+ VE+TE LA G+ A+S A++ A KE HT SV Q ++ Y E+GL Sbjct: 85 GGLNMMETIKKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKGSKAVSEAVSVAAKEAHTNSVSYAQEQMATLYAEIGL 183
BLAST of NO26G01110 vs. NCBI_GenBank
Match: CBN74567.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.5 bits (158), Expect = 2.000e-7 Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0 Query: 69 NPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165 N + + K NE+ K+ L KDL V G++ G V VT TG Q+P+ +I+E+A+A GA A++ + A + HT+S+ +L Y E+GL Sbjct: 76 NMMEGLKKANEIGQKTKDLQKDLELLKVEGKSPCGMVTVTVTGQQMPLSCDISEEAMAEGAKAVAEKVAAAQQAAHTESLQTMSKRLAELYSEMGL 171
BLAST of NO26G01110 vs. NCBI_GenBank
Match: WP_015224821.1 (YbaB/EbfC family nucleoid-associated protein [Halothece sp. PCC 7418] >AFZ42943.1 Uncharacterized protein family UPF0133 [Halothece sp. PCC 7418]) HSP 1 Score: 65.5 bits (158), Expect = 2.000e-7 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0 Query: 72 DAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165 DA AK ++ + L ++L + GQ+ DG VKV +G Q P VEI+ +A GA ALSA++TEA+K+ +TKS + K+ A L L Sbjct: 19 DAFAKAQQVQQGAQELQEELEQMNIEGQSSDGSVKVVMSGNQEPRSVEISPEAAEKGAEALSASVTEALKDAYTKSTDTMREKMEALTSGLQL 111
BLAST of NO26G01110 vs. NCBI_GenBank
Match: XP_005537576.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81540.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 63.5 bits (153), Expect = 7.500e-7 Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0 Query: 72 DAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGLGAAMKE 171 DAM K E + + L ++L T V + DG+V+ +G QVP+ VE++++ +A G A+S A+TEA++ H KS L + +L GL K+ Sbjct: 69 DAMKKAQEFSKSAQALQEELKNTEVEATSSDGRVRAVVSGQQVPIRVEVSDELIAEGNPAVSDAVTEAVRNAHVKSAELMRQQLADLTQSYGLPQPPKQ 167 The following BLAST results are available for this feature:
BLAST of NO26G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G01110 ID=NO26G01110|Name=NO26G01110|organism=Nannochloropsis oceanica|type=gene|length=1352bpback to top protein sequence of NO26G01110.1 >NO26G01110.1-protein ID=NO26G01110.1-protein|Name=NO26G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bpback to top Synonyms
Publications
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