NO26G01110, NO26G01110 (gene) Nannochloropsis oceanica

Overview
NameNO26G01110
Unique NameNO26G01110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr26:365209..366560 +

Link to JBrowse

Properties
Property NameValue
DescriptionYbaB-like DNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:365209..366560 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036894YbaB-like_sf
IPR004401YbaB
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
BLAST of NO26G01110 vs. NCBI_GenBank
Match: EWM23174.1 (YbaB-like DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 231.1 bits (588), Expect = 2.700e-57
Identity = 145/183 (79.23%), Postives = 156/183 (85.25%), Query Frame = 0
Query:    1 MRNLVLVAIALASSTSAFMVPTSGRVFGS----TSQISSSRAEGKGRMYMLFXXXXXXXXXXXXXXKPAGKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGLGAAMKEMGKGVGGQQ 180
            MR L+ +A ++AS  SAFMVPTSGR F S    T   S SR + KGR++MLFXXXXXXXXXXXXXX    KLNPFDAM+KMNELATKSNTLTKDLAGT VSG+AMDGKVKVTFTGTQVPMEVEI EDAL  GAAALSAALTEAMKEGH+KSV LQQSKLTAFYDELGLGAAMKEMGKG+GG Q
Sbjct:   62 MRILMFLAFSMASFASAFMVPTSGRAFTSISHPTMAPSVSRGDAKGRIFMLFXXXXXXXXXXXXXXXXXXKLNPFDAMSKMNELATKSNTLTKDLAGTIVSGEAMDGKVKVTFTGTQVPMEVEIAEDALGAGAAALSAALTEAMKEGHSKSVQLQQSKLTAFYDELGLGAAMKEMGKGMGGGQ 244          
BLAST of NO26G01110 vs. NCBI_GenBank
Match: XP_005786765.1 (hypothetical protein EMIHUDRAFT_352299 [Emiliania huxleyi CCMP1516] >EOD34336.1 hypothetical protein EMIHUDRAFT_352299 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 0
Query:   69 NPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165
            N  + + K  E+  K   L ++L  T +   A DG V V  +G QVPM+V+++ED  + GA A+S A++ AM+E H  S+   + KL A Y E+GL
Sbjct:   58 NMMETIKKAQEVGVKVKALQEELVNTEIEATAADGGVTVVISGAQVPMDVKVSEDLCSKGAEAVSDAISLAMREAHKNSMEYSKQKLGALYAEIGL 153          
BLAST of NO26G01110 vs. NCBI_GenBank
Match: KOO23218.1 (hypothetical protein Ctob_008209, partial [Chrysochromulina sp. CCMP291])

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-8
Identity = 38/99 (38.38%), Postives = 56/99 (56.57%), Query Frame = 0
Query:   66 GKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165
            G LN  + + K  ++  K   L ++LA T +   + DG   V  +G QVP+ VE+TE  LA G+ A+S A++ A KE HT SV   Q ++   Y E+GL
Sbjct:   85 GGLNMMETIKKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKGSKAVSEAVSVAAKEAHTNSVSYAQEQMATLYAEIGL 183          
BLAST of NO26G01110 vs. NCBI_GenBank
Match: CBN74567.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-7
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0
Query:   69 NPFDAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165
            N  + + K NE+  K+  L KDL    V G++  G V VT TG Q+P+  +I+E+A+A GA A++  +  A +  HT+S+     +L   Y E+GL
Sbjct:   76 NMMEGLKKANEIGQKTKDLQKDLELLKVEGKSPCGMVTVTVTGQQMPLSCDISEEAMAEGAKAVAEKVAAAQQAAHTESLQTMSKRLAELYSEMGL 171          
BLAST of NO26G01110 vs. NCBI_GenBank
Match: WP_015224821.1 (YbaB/EbfC family nucleoid-associated protein [Halothece sp. PCC 7418] >AFZ42943.1 Uncharacterized protein family UPF0133 [Halothece sp. PCC 7418])

HSP 1 Score: 65.5 bits (158), Expect = 2.000e-7
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   72 DAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGL 165
            DA AK  ++   +  L ++L    + GQ+ DG VKV  +G Q P  VEI+ +A   GA ALSA++TEA+K+ +TKS    + K+ A    L L
Sbjct:   19 DAFAKAQQVQQGAQELQEELEQMNIEGQSSDGSVKVVMSGNQEPRSVEISPEAAEKGAEALSASVTEALKDAYTKSTDTMREKMEALTSGLQL 111          
BLAST of NO26G01110 vs. NCBI_GenBank
Match: XP_005537576.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81540.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 63.5 bits (153), Expect = 7.500e-7
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   72 DAMAKMNELATKSNTLTKDLAGTFVSGQAMDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGLQQSKLTAFYDELGLGAAMKE 171
            DAM K  E +  +  L ++L  T V   + DG+V+   +G QVP+ VE++++ +A G  A+S A+TEA++  H KS  L + +L       GL    K+
Sbjct:   69 DAMKKAQEFSKSAQALQEELKNTEVEATSSDGRVRAVVSGQQVPIRVEVSDELIAEGNPAVSDAVTEAVRNAHVKSAELMRQQLADLTQSYGLPQPPKQ 167          
The following BLAST results are available for this feature:
BLAST of NO26G01110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM23174.12.700e-5779.23YbaB-like DNA-binding protein [Nannochloropsis gad... [more]
XP_005786765.11.000e-838.54hypothetical protein EMIHUDRAFT_352299 [Emiliania ... [more]
KOO23218.11.000e-838.38hypothetical protein Ctob_008209, partial [Chrysoc... [more]
CBN74567.12.000e-736.46conserved unknown protein [Ectocarpus siliculosus][more]
WP_015224821.12.000e-739.78YbaB/EbfC family nucleoid-associated protein [Halo... [more]
XP_005537576.17.500e-734.34hypothetical protein, conserved [Cyanidioschyzon m... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005957NSK005957Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01110.1NO26G01110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600580gene_7939Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g29gene7299Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01110.1NO26G01110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01110 ID=NO26G01110|Name=NO26G01110|organism=Nannochloropsis oceanica|type=gene|length=1352bp
AAACTAGCTAGCAAAAGATCCTGTGGGGTATGGAGGACAAGATGAAACGC
ATTTATAGAGTATGTAAGGCGGTTGAAAGGCATTGAGGTGCACTGCACAC
AAAGAGAGCACTGTAGCTGCTCTGTCTCCCAAGCGATTATGTCTTCTATG
CCTCAGTGTTGAAGCGACACCAACTAAACGAGGAGGAGCGGAGGAGCGGA
GGAGCGCACTCTTCGTATCGGCGGACGGCCGACTGCCTCCTTTTCCTCTT
CCATTTGTGCTAGAGGATGAGTACGACCACGTTCTGAGTCTTTCTGTGGC
TGGATGTGGTCGCGTGAGTCAGCAGAGTTTGCCACCACCCCAAATCGTAG
TATCCACTCGTCTTTTTTTGGACCCCCCCCCCGCAAGTTGCACAGCCGCT
CCTACACCACCCTACCATTATGCGTAACCTTGTCCTCGTGGCGATCGCAC
TGGCTTCGTCCACATCCGCCTTTATGGTGCCCACTAGTGGGCGTGTCTTT
GGTTCCACTTCCCAGATCTCTTCTTCCCGGGCAGAGGGCAAGgtaagtgt
tgaagaggcctagaagtttttgcgaagggggatgactacacactatctcg
cgttctgacacgcactccctcctcaattgcagGGTCGTATGTACATGCTT
TTCGGCGGGAGCGACAAGAAGAAGAAGGAGGAGGGCGGGGGTGCCAAGCC
TGCCGGCAAGTTGAACCCCTTCGATGCCATGGCCAAGATGAATGAGTTGG
CTACCAAGAGCAACACATTGACGAAGGACCTGGCCGGTACTTTTGTTTCT
GGCCAAGCGATGGACGGTAAAGTGAAGGTGACATTTACAGGCACTCAAGT
GCCCATGGAGGTGGAGATCACGGAGGATGCCCTGGCCGGGGGAGCGGCGG
CGCTGTCGGCGGCTCTGACGGAGGCGATGAAGGAAGGCCACACCAAATCC
GTCGGGCTCCAGCAATCCAAGCTGACAGCGTTCTATGACGAGTTGGGCTT
GGGGGCTGCCATGAAAGAGATGGGCAAGGGTGTGGGCGGGCAACAGTAAA
CGAAAGAAGAGCATATGTCACAGCGATAGACAGACAGCATTTAGAAGGAG
TAAGGCAACGCAGCCGCACGAACGCTGAAAGAAGCAATTTTTAAGACACT
AAACGTTTTGATAAAAAAGGGAGTAGATCCACCCTTCCCAACCCCCACCT
CGCTGACTTGAGGGTTGAAAACAAAGAAAGAAATGGAAACAACGGAGAAA
CCAAAGAGCGCTTTTGGAAAGTATGCCAGCTGTTATGTTCGAGCCAACCC
CTACCTACACAGTCAATTTCAAGAAAATAAAAAGCAACTACCTTGCAAGC
GA
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protein sequence of NO26G01110.1

>NO26G01110.1-protein ID=NO26G01110.1-protein|Name=NO26G01110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRNLVLVAIALASSTSAFMVPTSGRVFGSTSQISSSRAEGKGRMYMLFGG
SDKKKKEEGGGAKPAGKLNPFDAMAKMNELATKSNTLTKDLAGTFVSGQA
MDGKVKVTFTGTQVPMEVEITEDALAGGAAALSAALTEAMKEGHTKSVGL
QQSKLTAFYDELGLGAAMKEMGKGVGGQQ*
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Synonyms
Publications