NO26G01100, NO26G01100 (gene) Nannochloropsis oceanica

Overview
NameNO26G01100
Unique NameNO26G01100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1972
Alignment locationchr26:363629..365600 -

Link to JBrowse

Properties
Property NameValue
DescriptionYbaB-like DNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:363629..365600 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036894YbaB-like_sf
IPR004401YbaB
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO26G01100 vs. NCBI_GenBank
Match: EWM23166.1 (YbaB-like DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 419.9 bits (1078), Expect = 7.400e-114
Identity = 223/325 (68.62%), Postives = 262/325 (80.62%), Query Frame = 0 
Query:    1 MRISNQMCLASALAIGCSVMTSAFLMPFPNAKGLARTQVWSAVTDRTPSAVASS--SGTVAPVLPGMAEDEADDPNEYFEPEPVDPTLAELEALSSEELAHVLPNSGGKTIQQWLEGDKPTFTDGSLVGNWVKEAQRLRLMPFLERAEHLKAQSFDDLNAFRARQVEWRDMLESKGVLDVYQGMAETGITELSDEAYAAKLAGAREQYTAEMVAHEEALLASVDALCKNARFEGFAADNMVRVVMNGRMEPQEVEVKEGPAFADARLLGLAVEAAMDSAYKQAAEFYEETMATEYLSKAQSPTDVQGIVEALAKKEFSVEEDVVD 324
            MR ++ M L   + +  + + SAFL+P P+ K L RTQVWS VTDR+PS+V SS  SGT+APVLPGMAEDE DDPNEY+EPEPVDPT+ EL+AL +EELA VLP S GKTI QWLE D+P F            A RLRL+PF+ERAE LKA+SFDDLN FRARQV WR+MLE+KGVL+ YQGM ETG+TELS EA+AAK A A+EQYTA+M+ HEEALL SVD LC+NARFEG AADN VRVVMNGRMEPQEVEV EG    DARLL LAVEAAMD+AYKQ+AEFYEET+ TEYL++A++PTDV+GIVEALA+KEF ++E VVD
Sbjct:    1 MRRNDCMWLVPIIVMTNTTLCSAFLLPRPSCKVL-RTQVWSTVTDRSPSSVTSSSASGTLAPVLPGMAEDELDDPNEYYEPEPVDPTVDELKALGAEELATVLPGSDGKTIGQWLEEDRPVFXXXXXXXXXXXXAHRLRLLPFMERAEFLKAKSFDDLNVFRARQVAWREMLEAKGVLEPYQGMPETGVTELSPEAHAAKQARAQEQYTADMINHEEALLESVDVLCRNARFEGLAADNKVRVVMNGRMEPQEVEVLEGAPLGDARLLALAVEAAMDAAYKQSAEFYEETITTEYLAQAETPTDVEGIVEALARKEFVIDEHVVD 324
The following BLAST results are available for this feature:
BLAST of NO26G01100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23166.17.400e-11468.62YbaB-like DNA-binding protein [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005958NSK005958Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01100.1NO26G01100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600577gene_7938Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g30gene7300Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01100.1NO26G01100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01100 ID=NO26G01100|Name=NO26G01100|organism=Nannochloropsis oceanica|type=gene|length=1972bp
TGCAACTTGCGGGGGGGGGGTCCAAAAAAAGACGAGTGGATACTACGATT
TGGGGTGGTGGCAAACTCTGCTGACTCACGCGACCACATCCAGCCACAGA
AAGACTCAGAACGTGGTCGTACTCATCCTCTAGCACAAATGGAAGAGGAA
AAGGAGGCAGTCGGCCGTCCGCCGATACGAAGAGTGCGCTCCTCCGCTCC
TCCGCTCCTCCTCGTTTAGTTGGTGTCGCTTCAACACTGAGGCATAGAAG
ACATAATCGCTTGGGAGACAGAGCAGCTACAGTGCTCTCTTTGTGTGCAG
TGCACCTCAATGCCTTTCAACCGCCTTACATACTCTATAAATGCGTTTCA
TCTTGTCCTCCATACCCCACAGGATCTTTTGCTAGCTAGTTTCGCTTTTC
AATTTCCCCCTCGGGATAGTGTTGCCGTTTGCTGCGTACAAAGGCAAAGC
AGCTTCTCTACTAGCACACACCCACACCATGAGGATAAGCAATCAAATGT
GTCTGGCTTCGGCATTAGCCATTGGTTGCTCCGTCATGACATCAGCTTTC
TTGATGCCCTTCCCCAATGCCAAGGGACTGGCGCGGACACAGgtacgtct
tggggagacggagtggtggtaggcggtatctttccccgcatgtgttccac
ttaccctttcagacgcaatctctcgtggccagagcctcaacagccatatt
cctacgcatccaaacagGTATGGAGCGCCGTGACGGACCGGACTCCGTCC
GCCGTGGCTAGCAGCAGTGGCACGGTGGCGCCCGTTCTGCCGGGCATGGC
GGAGGACGAGGCTGACGACCCGAACGAGTACTTTGAGCCTGAGCCCGTGG
ATCCCACATTGGCCGAGCTCGAGGCATTGAGCTCCGAGGAGCTGGCTCAC
GTACTACCAAACAGTGGGGGAAAGACGATCCAGCAGTGGTTGGAAGGGGA
CAAACCCACCTTTACCGACGGCTCCTTGGTTGGGAACTGGGTGAAAGAGG
CGCAACGCTTGCGTTTAATGCCCTTCTTGGAGCGGGCTGAACACTTGAAG
GCCCAATCCTTTGATGATTTGAACGCGTTCCGGGCCCGACAGGTGGAGTG
GCGGGATATGTTGGAGTCCAAGGGCGTGTTGGATGTGTACCAGGGCATGG
CCGAGACGGGAATTACGGAGCTCTCTGACGAGGCATACGCAGCCAAGCTG
GCCGGTGCTCGGGAGCAGTATACGGCAGAGATGGTGGCTCATGAGGAGGC
CTTGTTGGCAAGTGTTGATGCTTTGTGTAAGAATGCGCGTTTTGAGGGCT
TTGCGGCGGATAACATGGTGCGGGTGGTCATGAATGGGCGCATGGAGCCT
CAAGAGGTGGAGGTGAAGGAGGGGCCGGCCTTTGCGGATGCGCGTCTATT
GGGCCTAGCGGTGGAGGCGGCGATGGACTCGGCGTACAAGCAGGCTGCCG
AGTTTTACGAGGAGACGATGGCAACGGAGTATCTGTCCAAGGCGCAGAGC
CCGACGGACGTGCAGGGCATTGTGGAGGCGCTGGCTAAGAAGGAATTTTC
TGTTGAGGAGGATGTGGTGGACATGTTCTAGGTGAATGAATAGGAAGAAT
GACAGAAGGAAGGGATTGATGGGTTACAACAAGAATTATTTTTGACCAAA
TAACACGGCGCGAGAGAAGGCAAGAGAGAAGGAAGAACAAATCAAGCCCC
GAAAAGCCATAGAAGGAAAGGAAGATACGGACGTATCACAAATCAAAAGT
GGAACCAAAGCCAACGTACACTTCAGAAAATGGTGACATGCTTGATAAAT
CGGAAACACACATCGGATAGGGCCACATGTAGCCGATATGGAAAAGAAAG
AAACGGCGACGACAGAAGAGGACACACTCGTGGTGATGAGCAAAGACTTC
TGCGCCTTGGCTGTCCGTCAGTTAACATGGGTTTTCACATTTTCGAATGA
CAAAAAATACATCAATCTTTAC
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protein sequence of NO26G01100.1

>NO26G01100.1-protein ID=NO26G01100.1-protein|Name=NO26G01100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MRISNQMCLASALAIGCSVMTSAFLMPFPNAKGLARTQVWSAVTDRTPSA
VASSSGTVAPVLPGMAEDEADDPNEYFEPEPVDPTLAELEALSSEELAHV
LPNSGGKTIQQWLEGDKPTFTDGSLVGNWVKEAQRLRLMPFLERAEHLKA
QSFDDLNAFRARQVEWRDMLESKGVLDVYQGMAETGITELSDEAYAAKLA
GAREQYTAEMVAHEEALLASVDALCKNARFEGFAADNMVRVVMNGRMEPQ
EVEVKEGPAFADARLLGLAVEAAMDSAYKQAAEFYEETMATEYLSKAQSP
TDVQGIVEALAKKEFSVEEDVVDMF*
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Synonyms
Publications