NO26G01080, NO26G01080 (gene) Nannochloropsis oceanica

Overview
NameNO26G01080
Unique NameNO26G01080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr26:359552..361546 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:359552..361546 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G01080 vs. NCBI_GenBank
Match: EWM23158.1 (hypothetical protein Naga_100043g33 [Nannochloropsis gaditana])

HSP 1 Score: 188.3 bits (477), Expect = 7.400e-44
Identity = 180/394 (45.69%), Postives = 233/394 (59.14%), Query Frame = 0 
Query:    1 MMRAQIARESGGASSYLGIHRLAHLPPSSNKD---------LLYDTTAYINHLETQLKRVTAACEQASDLKEENQAVRELVEEVSARVNAYGANRHDTESRLHAVETLGDRLTNLEVEGRLRDXXXXXXXXXXXXXXXXXXXXXCTTALLERLKSLERVVVEFEMREGEAKDEQQNEVARLTTRLD-------ELEMWCQGLETAQLQGFARLRIEVEESMERFRHEVSMDHHRALSACTKQGILLQEELSRMQKQIAELQRREVLREDSTFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMADKLEKKLAALNAAFRHAEKGHNKSRKEHQGAITRLQQTLAMVGEKALETSARQAEAVLGVMRQLEDRLAGLETEQ 379
            M+RA I RESGG ++YL  HRLA LP S  +D          LYD  AYI +LETQLKRVTAA EQA + +E  QA+ +LVE++S RV A   +R   E      + L ++LT+LEV+   +DXXXXXXXXXXXXXXXXXXXXX   A+ +R+K++E  V E +MR    + ++  E+  L  RL+       EL   C+GLE AQ++G A +R E+   MER RH+VSM  HR LS+C+KQG L QEE+                R      XXXXXXXXXXXXXXXXXXX                          A +  KKL  L AAF HAE+ H +  +E +  + ++Q+ L  VG KALET++ QAEAVL V+ QLE+R+A +E EQ
Sbjct:    1 MIRAHITRESGGQATYLAKHRLAKLPSSHLRDSSSEGGLDRCLYDNAAYIQYLETQLKRVTAASEQAENFRESTQALNDLVEKMSDRVTA--LDREFEERYSSRQDALCNQLTSLEVKLEQQDXXXXXXXXXXXXXXXXXXXXXXPAAIQDRIKTMEETVRELQMRLDAVECQRGTEINGLEARLEAVEKANAELSARCRGLEAAQVEGLAGVRSELSGDMERLRHDVSMGDHRILSSCSKQGELAQEEMG---------------RXXXXXXXXXXXXXXXXXXXXXXXXXSSASRDYTAARDSSGLKMGDAGEGSAAMEQGKKLRVLTAAFHHAEEAHRRRYQEQRAMLDKMQKFLTAVGVKALETASSQAEAVLSVVGQLEERVACMEAEQ 377
The following BLAST results are available for this feature:
BLAST of NO26G01080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23158.17.400e-4445.69hypothetical protein Naga_100043g33 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005960NSK005960Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01080.1NO26G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177367gene_7936Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g33gene7303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01080.1NO26G01080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01080 ID=NO26G01080|Name=NO26G01080|organism=Nannochloropsis oceanica|type=gene|length=1995bp
ATGATGCGAGCCCAAATCGCCCGAGAAAGCGGCGGGGCATCGTCGTACCT
TGGCATTCATCGCCTCGCCCACCTCCCGCCCAGTAGCAACAAAGACCTGC
TCTACGACACCACTGCCTACATAAACCACCTCGAGACACAACTGAAGAGG
GTCACGGCCGCGTGCGAGCAGGCCTCAGACCTGAAGGAGGAAAATCAGGC
CGTGCGGGAATTGGTGGAGGAGGTGTCGGCGCGCGTGAATGCCTACGGTG
CCAACAGGCACGACACTGAAAGCCGCTTGCACGCTGTCGAGACGTTGGGG
GATCGTTTGACAAATCTTGAGGTCGAAGGCAGGCTGCGGGATGAGCAACA
GCAACAAGGGCGGAAGCAGCAAGAGGAATGGCAGGAGCAGCAGCGGAGCC
AGAACTGCACCACAGCGCTGTTGGAACGATTGAAATCGCTCGAGAGAGTG
GTTGTCGAGTTCGAGATGCGAGAGGGAGAGGCAAAGGATGAGCAGCAAAA
CGAGGTAGCGCGGCTGACAACACGATTAGATGAGCTTGAAATGTGGTGTC
AGGGATTGGAGACAGCACAGCTACAAGGATTTGCGCGATTGCGAATCGAG
GTGGAAGAAAGCATGGAGAGGTTTCGGCATGAAGTCTCTATGGATCACCA
CCGTGCCCTCAGCGCGTGCACCAAGCAAGGCATCTTGTTACAAGAGGAGC
TGAGTAGGATGCAAAAGCAAATTGCAGAGCTGCAGCGGAGGGAGGTGTTG
CGAGAGGATTCAACATTTGTTTCGAGCCAGCAGGAGATGGGAGGGGAGAG
AGGAATAGGAGGAGGAGGAGCAGCAGCAGCAGCAGAAGCAGCAGTGCCGA
CATCTTCATGGCAATACCTGGAAGGGGGCGGTGATAATAAGCCGACCACG
ACGATGGCGGATAAATTGGAAAAGAAACTTGCTGCTCTTAACGCCGCATT
TCGACACGCGGAGAAGGGGCACAACAAGAGCAGGAAGGAGCATCAAGGTG
CTATTACAAGGCTGCAGCAGACTCTAGCAATGGTGGGAGAGAAGGCGTTA
GAGACGTCGGCGAGGCAAGCGGAAGCCGTGCTAGGGGTAATGCGACAGCT
AGAGGACCGGCTCGCAGGCTTGGAGACTGAGCAACAGCAGCGGAATCAGC
GGAAACAGCGGCAACAGCAGCGGAAACAGCGGCAACAGCAGCGGCAACAA
CGGCAGCAGCGGCAGCAGCCGCTTGAGCAGCAGTTTCATGAGGGAGGGCC
CATGGAAGAGACGTGGATGACAGCCGAGGCGATGGACATGATCTCGACTG
AACGCTTCAAGGACATGGCTGAGGAAAGAGGGGAGGAGGACAAGAAGGAG
GAGGAAGAGCAGGAAGAGGAGGAAGAGGAGGAAGGGGTCATAACTGCTGC
TTGGCAACACATACAGGAGCAGCAGCGGCTACAGAAGGAGGAGGAGGAGC
GCGAGATTGAAGAAGAGCTGATGCGGGCCACTAGTGCAGTCTTGGCGACA
GGAGCGATGATTGGTGCTGGTGGTGGATGCAAGGGGAAGATGGAGGAAAA
TACAAAAGTACAAGGGGCTCGAGAGAAGGTTGTTGGCGAAAGAGGAAAGC
ATCGCAACCGCGCCGATTTTTCTGCAGCCCTTCATCATCAAGCACTTTCT
ATCGAATCAACAGCACGCAGCAAGCTGAAGGGTCTCTCGCGGCGGCAGGG
GAAAAGTTCGGCGGCATTGAGTGGCTCGGCTGGGTTGCAAGAAGGCATCA
TTCCCAATGTAGCGGTCAAAAAAAAGGCATTGACTCCTCACCTACCTATT
AGTCCCCCTTCTCCTTCTGCTTCCTTCTCTTCGTCCTCGCCTTCTTCCCC
TCTCCGTCGCCATCAACGAAGAAATGAAGTGGCGAGGTGTTCGATGGAGC
AGCAGCAGCAACAACAGCACCAGCAAATGCAAAAGAACAGAGATAATAAA
AGGATGCCTGGTTTGTTGAAGCGAGGGCGTCATGTCATCATCTGA
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protein sequence of NO26G01080.1

>NO26G01080.1-protein ID=NO26G01080.1-protein|Name=NO26G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MMRAQIARESGGASSYLGIHRLAHLPPSSNKDLLYDTTAYINHLETQLKR
VTAACEQASDLKEENQAVRELVEEVSARVNAYGANRHDTESRLHAVETLG
DRLTNLEVEGRLRDEQQQQGRKQQEEWQEQQRSQNCTTALLERLKSLERV
VVEFEMREGEAKDEQQNEVARLTTRLDELEMWCQGLETAQLQGFARLRIE
VEESMERFRHEVSMDHHRALSACTKQGILLQEELSRMQKQIAELQRREVL
REDSTFVSSQQEMGGERGIGGGGAAAAAEAAVPTSSWQYLEGGGDNKPTT
TMADKLEKKLAALNAAFRHAEKGHNKSRKEHQGAITRLQQTLAMVGEKAL
ETSARQAEAVLGVMRQLEDRLAGLETEQQQRNQRKQRQQQRKQRQQQRQQ
RQQRQQPLEQQFHEGGPMEETWMTAEAMDMISTERFKDMAEERGEEDKKE
EEEQEEEEEEEGVITAAWQHIQEQQRLQKEEEEREIEEELMRATSAVLAT
GAMIGAGGGCKGKMEENTKVQGAREKVVGERGKHRNRADFSAALHHQALS
IESTARSKLKGLSRRQGKSSAALSGSAGLQEGIIPNVAVKKKALTPHLPI
SPPSPSASFSSSSPSSPLRRHQRRNEVARCSMEQQQQQQHQQMQKNRDNK
RMPGLLKRGRHVII*
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Synonyms
Publications