NO26G01000, NO26G01000 (gene) Nannochloropsis oceanica

Overview
NameNO26G01000
Unique NameNO26G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1282
Alignment locationchr26:325895..327176 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:325895..327176 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO26G01000 vs. NCBI_GenBank
Match: EWM23173.1 (hypothetical protein Naga_100043g44 [Nannochloropsis gaditana])

HSP 1 Score: 97.1 bits (240), Expect = 1.000e-16
Identity = 67/166 (40.36%), Postives = 97/166 (58.43%), Query Frame = 0 
Query:  124 LKKAAREN--QQLSNKVKSLEAALALAKNQKINREGLGMRHAQRARRVEEALIDTKRAMTIFLSAAQGTDVRLQQLQENEKRLKDTLIKEQTARTEDMARAQALNKRLEGQVRQLEKEKEGLREAFGKQGELMKVLRRQTQHLQAAQLLSFTEKDLNRLVLDWQRA 288
            ++K A +N  QQL +K+  LEAAL  A+NQ    E L  +HAQRA   E+ ++  KR      S  +G  V  Q+L++  KRL+  L ++++ R   M + Q    + E + R LEKE   LR A  KQGEL++VL RQ +H QA QL S  E+D + LV+D +R+
Sbjct:   78 VEKHATKNRHQQLLDKINRLEAALLQAQNQNATNERLATQHAQRALFAEKDVLQMKRETLTRTSELKGQGVHRQRLEKETKRLQAALKQDKSTRETKMRQCQIALDQTERRARHLEKENAQLRAALQKQGELLQVLDRQVEHAQAMQLFSIMEEDFDNLVVDLRRS 243
The following BLAST results are available for this feature:
BLAST of NO26G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23173.11.000e-1640.36hypothetical protein Naga_100043g44 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005969NSK005969Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01000.1NO26G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600538gene_7923Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g44gene7312Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01000.1NO26G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01000 ID=NO26G01000|Name=NO26G01000|organism=Nannochloropsis oceanica|type=gene|length=1282bp
TCATATCATGCTTCTTGTGCCCTCGATTGAGAGTGATCATCAGCTGTTAT
TTTGTGTGATAATAGTTATTAAATATTTTAATTCGTTCTATTGTTGCAGT
GGCCCATCAACCTCCTGCCCTGGTCCCGGCCGGCCTGCTTCTGTGTTTAA
CACTCTCCATGCCCAGCTGACACAACCGCCACAATCACGCAAATACATAG
AAAATACATCCTCATCACCAACTTTCCAACAGCAAAAATAGCGCAAATAT
AGGGTCGACCGCGCCTAAGGTCAGCGTCGCTCGTCCGAAGCTGCACACCA
ACATGTCCCGCCATAATCAAGACGTACCGCTGCCGCAAACCGCAACGCCC
GCCGCAAGCCGCACTTACACGGATAGCCACACCAGTTTCCCATTCCCTCA
GAAACGACAGCCTATGCGGTCGTCGTCCATCCTGCACCGTCGTCTTCTCG
CCCTCCAAGCGGCCCTGGACCCTCCTCCGCCTGTACTCCGCCACCCGCCG
CCGTCGACAGTCCTCGTGGAACCAACCCTTCTCACCACCAGCACGACCAC
GTCAACCTCGTCGACCCCGCAAGAGCTACATGCCATCCTTACAGCACAGG
AACAGGAGTTGCGAGGTACGCCAGCCGAGAACAAACCCGTCGACAAGGGC
GTGCGGCATTTTGAGAGTGCCCTTAAAAAGGCTGCGCGGGAAAATCAGCA
ACTCTCTAATAAGGTCAAGAGCTTGGAAGCAGCGCTGGCTTTGGCCAAGA
ATCAAAAAATAAATAGGGAGGGCTTAGGGATGCGGCATGCTCAACGTGCG
AGGCGAGTGGAAGAGGCTCTGATTGACACGAAGCGGGCGATGACGATTTT
TCTGTCTGCAGCTCAGGGGACGGACGTGCGTCTGCAGCAGTTACAGGAAA
ATGAAAAGCGACTGAAAGATACTTTGATCAAGGAGCAAACTGCACGGACT
GAAGACATGGCTAGAGCACAAGCATTAAATAAGAGGTTGGAAGGGCAGGT
ACGGCAGCTGGAGAAGGAAAAGGAGGGGTTGCGGGAGGCATTTGGGAAGC
AGGGAGAGTTAATGAAAGTGCTTCGACGACAGACGCAGCATTTGCAGGCG
GCTCAGCTCTTATCGTTTACAGAAAAGGACTTAAATCGCTTGGTGCTGGA
TTGGCAACGTGCATTTGCATCAGGCGAGGAAGTGAGCAGGAAGAGTAAAA
TAACGAGATGAAATGAGAGGATTTTAACAAACCTTTAGAGGAGGGAGGCA
AAGCAAAAGTGAAGGCGGCGCAATAACCGCTA
back to top

protein sequence of NO26G01000.1

>NO26G01000.1-protein ID=NO26G01000.1-protein|Name=NO26G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MSRHNQDVPLPQTATPAASRTYTDSHTSFPFPQKRQPMRSSSILHRRLLA
LQAALDPPPPVLRHPPPSTVLVEPTLLTTSTTTSTSSTPQELHAILTAQE
QELRGTPAENKPVDKGVRHFESALKKAARENQQLSNKVKSLEAALALAKN
QKINREGLGMRHAQRARRVEEALIDTKRAMTIFLSAAQGTDVRLQQLQEN
EKRLKDTLIKEQTARTEDMARAQALNKRLEGQVRQLEKEKEGLREAFGKQ
GELMKVLRRQTQHLQAAQLLSFTEKDLNRLVLDWQRAFASGEEVSRKSKI
TR*
back to top
Synonyms
Publications