NO26G00990, NO26G00990 (gene) Nannochloropsis oceanica

Overview
NameNO26G00990
Unique NameNO26G00990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3179
Alignment locationchr26:322267..325445 +

Link to JBrowse

Properties
Property NameValue
DescriptionFACT complex subunit SSRP1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:322267..325445 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR024954SSRP1_dom
IPR035417POB3_N
IPR009071HMG_box_dom
IPR013719DUF1747
IPR000969SSrcognition
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0006950response to stress
GO:0006259DNA metabolic process
Homology
BLAST of NO26G00990 vs. NCBI_GenBank
Match: EWM23164.1 (fact complex subunit ssrp1 [Nannochloropsis gaditana])

HSP 1 Score: 889.0 bits (2296), Expect = 9.800e-255
Identity = 570/651 (87.56%), Postives = 610/651 (93.70%), Query Frame = 0
Query:    3 AIVEKFENIGLSGQSVGTLTFTEKGVEWRGPSNAKAVQAKDILRATWCIFGKWGHLRLFLRNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEEEESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQTIRVIDDKPVSQAKIDRMLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKDPNAPKKSLSGYMLFTQASREQLKVEQPSLKVTEVSKVMGERWRGMSAEEKKPFEDQAKEAKIKYLEDVQAYK 654
            A +EKFENIGLSGQSVGTLTFT KG+EWRGPSNAK VQAKDILRA+W +FGKWGHLRLFL+NGKALRCDGF+RT+EERV+E+F +NYSL+LERE L SGGANYGDLIFEDNTLVM+LEDK VLELPLGAVSQCVLPGTGN+KNEVELQF+ETDAADRDED LVEVRFYIPPGEEE+ GAE FQKNVLART VQASTGDALVTFAEDEGFFLYPRGRYVINLY NSFRLHG+KYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDG SEVTVNMTE+EL+EKYEDRLEQ M GPMHHLVAKTFK+LSGKKVYHSQRF+SARNVRW+KCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESV+FDRVGGAVGVTR+FDL++ ++PLDGDVRREY+FAQI+KEEHA LSQYLRDKQTI+VIDDKPVSQAKIDRML          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    NAPK++LS YMLFTQASRE +K EQP LKVTE+SKVMGERWR +SAEEKK FEDQA  AK++Y E+++AYK
Sbjct:    2 ATIEKFENIGLSGQSVGTLTFTGKGLEWRGPSNAKTVQAKDILRASWSVFGKWGHLRLFLKNGKALRCDGFLRTEEERVREVFQSNYSLSLEREVLNSGGANYGDLIFEDNTLVMSLEDKPVLELPLGAVSQCVLPGTGNIKNEVELQFVETDAADRDEDTLVEVRFYIPPGEEEDDGAEAFQKNVLARTTVQASTGDALVTFAEDEGFFLYPRGRYVINLYTNSFRLHGAKYDHKMAYDDIIHFFLLERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGASEVTVNMTEEELREKYEDRLEQTMAGPMHHLVAKTFKILSGKKVYHSQRFQSARNVRWVKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVSFDRVGGAVGVTRTFDLRVLLRPLDGDVRREYIFAQIEKEEHANLSQYLRDKQTIKVIDDKPVSQAKIDRML----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAPKQALSAYMLFTQASREAVKAEQPGLKVTEISKVMGERWRALSAEEKKVFEDQAASAKVRYGEELRAYK 642          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: CBJ29726.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 372.5 bits (955), Expect = 3.100e-99
Identity = 285/654 (43.58%), Postives = 395/654 (60.40%), Query Frame = 0
Query:    8 FENIGLSGQSVGTLTFTEKGVEWRG--PSNAKAVQAKDILRATWCIFGKWGHLRLFL-RNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEE---EESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGA--VGVTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQTIRVIDDKPVSQAKIDRMLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKDPNAPKKSLSGYMLFTQASREQLKVEQPSLKVTEVSKVMGERWRGMSAEEKKPFEDQAKEAKIKYLEDVQAY 653
            F  IG+ G S+G L  T + + W     S++K V+  D+  ATW  +  + HLRLF+ R+ + +R DGF + Q   + E F +   ++L  E+   GG NYGD+   DN +  +  +K + +L +  VSQCV+PG     N+VELQ  E+DA D+ ED LV +R  +P  +E   E S AE  Q  V+ R N+    G  LV F E +G F +PRGRY + +Y++  R+HGS+YD+K+ Y+DI   FLLE+PD R+ AFVI L KPIRQGQQ+Y +LVL+T    + +TVNM+ ++L++KY+  L   M GP+H+L+AK FKVLS K VY + +F S    + +KC+L A+EG LYPL+K+F+FI+KPT  I F +IESV F R GGA   GVTR+FDL +  K + G+  + YVF+ ID+ E+++L  +L  K+ +R+   K + ++  D  +                                                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXX  D +APK ++S +M F+QA+R Q+K + P LKVTE+SKV+GE+W  +   +KKP++D+A E K +Y  +  AY
Sbjct:    3 FSKIGVQGYSLGNLQLTAEELNWTSDDKSSSKKVKWLDVSHATWAQYAAYCHLRLFMKRDARPVRLDGFSKAQHADI-EKFLSERDVSLSNESPNPGGGNYGDIEVLDNIVRFSSGNKTLFDLNIKDVSQCVMPGV-KKSNDVELQLHESDATDQTEDTLVAIRVTLPEKDEDTDERSPAESLQMAVMERANIHDVKGKVLVEFNESQGTFDFPRGRYSVEMYSHFMRMHGSRYDYKIQYNDISKLFLLEKPDERYVAFVISLDKPIRQGQQKYQHLVLRTTKDEATITVNMSAEDLQKKYDSNLNSEMIGPLHNLIAKIFKVLSNKPVYVTGKFSSTNGAKAVKCALGANEGYLYPLNKSFIFIHKPTCIIGFDEIESVEFQRYGGAQGAGVTRNFDLCVAPKSVAGETPKPYVFSGIDRSEYSSLYSFLSTKK-LRI---KNIKESGNDNAM------------------------------LQLGDLDDHDPYKAALDDDQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHKTSKKRPGTGSAKKGXXXXXXXXXXXXXXXXXXXXXXXXDKDAPKGAMSAFMQFSQANRAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKARYKRERDAY 620          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: OEU20514.1 (SSrecog-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 336.3 bits (861), Expect = 2.500e-88
Identity = 190/433 (43.88%), Postives = 268/433 (61.89%), Query Frame = 0
Query:   37 KAVQAKDILRATWCIFGKWGHLRL--FLRNGK----ALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGD-------LIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEE-------EESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGDV--RREYVFAQIDKEEHATLSQYLRDKQTIRVIDDKPVSQA 447
            K +   +I +A W +FGK GHLR+   ++ GK     LR DGF     + +K+ F  NY + + +  ++S G  YG        L+F+     +   D+ ++ L LG VSQCVLP  GN +NEVELQF E+DA + + D LV VR YIPP  E        ++ AE+ Q  ++   N++ +TGD +V F  ++G FL PRGRY I LY   FR+ G KYD+K+ YDDI   FLL +PD    AFVI L KPIRQGQQRY YLVLQT+    EV VN+ ED LK++Y D L+  M G + +LVAKTFKV++ KKV+   +F +A     +KC+L+A+EGLLYPL+K F+FI+KP + I F ++ESV F R  G  G TR+FDL +T+K     +  ++EYVF+ ID+ ++  L  +L  K +IR+ + + +S A
Sbjct:    1 KNIPKGNIEKAGWTVFGKSGHLRIGVIVKEGKNGPSELRFDGFPVASFDDLKDFFQENYDIEVSKHNISSAGTQYGQSKISGKKLLFQHCEFEVRTGDE-MMSLDLGEVSQCVLP--GNNRNEVELQFPESDAIEANNDQLVSVRLYIPPDPEVDPSDKTAKTSAELLQHRIMQMANIRKTTGDVIVEFDLEKGSFLTPRGRYSIELYERFFRMRGQKYDYKIKYDDISRLFLLPKPDDVHMAFVIALDKPIRQGQQRYQYLVLQTNKDPDEVRVNLDEDTLKKEYGDDLQPIMRGSLSNLVAKTFKVIAKKKVFIPGKFSNANQQPCVKCALRANEGLLYPLEKQFIFIHKPPVLIRFNEVESVEFQRYAGGQGSTRNFDLCVTLKASAASISNQQEYVFSGIDRSDYTGLYNFLSTK-SIRIKNLQEISGA 429          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: GAX21600.1 (structure-specific recognition protein 1 [Fistulifera solaris])

HSP 1 Score: 335.5 bits (859), Expect = 4.200e-88
Identity = 184/466 (39.48%), Postives = 272/466 (58.37%), Query Frame = 0
Query:    8 FENIGLSGQSVGTLTFTEKGVEWRGP-------------SNAKAVQAKDILRATWCIFGKWGHLRLFLRNGK---ALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYG----------------DLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEEEE-------SGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQ 434
            +++IGL G S+GTL+  ++ + W+G              +  + + A  I  A W +FG+ GHLR+ +++ K    LR DGF     + +K+     Y++A++   ++S G  YG                D + E+        +  ++ L L  VSQCVLP  GN +NE+E+QF E+DA +   D LV +RFYIPP  + +       + AE+ Q  ++A   V+ +TGD + TF   +G FL PRGRY + LY    RL G KYD+K+ YDDI   FLL +PD    AFVI L KPIRQGQQRY YLVLQ      EVT+ + ED L+++Y+  L+  M G + +L+AKTFKV+SGKKV+   +F ++     +KC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R  G  G TR+FDL + +K  +    +EY+F+ ID+ ++A L  +L  KQ
Sbjct:    9 WKHIGLHGHSMGTLSLLKERITWKGALTGGGAADDEYQGTMVRNIPASAIKGAQWTVFGRSGHLRIQIQDEKLPHELRFDGFPAQDVDILKDALQQQYNIAMQLHTMSSAGTQYGLTSVQGKQLLFRHCVLDEMNEEGQEFEPRPEHEMMSLNLAEVSQCVLP--GNNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEDTLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQSSTKEYIFSGIDRSDYAGLYNFLNGKQ 472          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: GAX14828.1 (structure-specific recognition protein 1 [Fistulifera solaris])

HSP 1 Score: 333.2 bits (853), Expect = 2.100e-87
Identity = 185/466 (39.70%), Postives = 273/466 (58.58%), Query Frame = 0
Query:    8 FENIGLSGQSVGTLTFTEKGVEWRGP-------------SNAKAVQAKDILRATWCIFGKWGHLRLFLRNGK---ALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYG----------------DLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEEEE-------SGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQ 434
            +++IGL G S+GTL+ T++ + W+G              +  + + A  I  A W +FG+ GHLR+ +++ K    LR DGF     + +K+     Y++A++   ++S G  YG                D I E+        +  ++ L L  VSQCVLP  GN +NE+E+QF E+DA +   D LV +RFYIPP  + +       + AE+ Q  ++A   V+ +TGD + TF   +G FL PRGRY + LY    RL G KYD+K+ YDDI   FLL +PD    AFVI L KPIRQGQQRY YLVLQ      EVT+ + E+ L+++Y+  L+  M G + +L+AKTFKV+SGKKV+   +F ++     +KC+++A+EGLLYPL+K F+FI+KP + I F +IESV F R  G  G TR+FDL + +K  +    +EY+F+ ID+ ++A L  +L  KQ
Sbjct:    8 WKHIGLHGHSMGTLSLTKERITWKGALTGGGTADDDFQGTMVRNIPALSIKGAQWTVFGRSGHLRIQIQDDKLPHELRFDGFPAQDIDILKDALQQQYNIAMQLHPMSSAGTQYGLTSVKGKQLVFRHCVLDEINEEGQEFEPRPEHEMMSLNLAEVSQCVLP--GNNRNEIEVQFPESDAVEAGTDQLVSIRFYIPPDLDADPSDKTAPTAAELLQAKIMATAQVRKTTGDVICTFDAAKGTFLTPRGRYGMELYDRFLRLRGQKYDYKIKYDDINRLFLLPKPDEVHMAFVIALDKPIRQGQQRYQYLVLQAPKDPDEVTIALDEETLEKEYKGELQPVMRGSLSNLIAKTFKVISGKKVFIPGKFANSNEQACVKCAVRANEGLLYPLEKQFVFIHKPPIIIRFNEIESVEFQRYAGGQGSTRNFDLCVNLKDPEQST-KEYIFSGIDRSDYAGLYNFLNGKQ 470          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: EJK70063.1 (hypothetical protein THAOC_08612 [Thalassiosira oceanica])

HSP 1 Score: 322.8 bits (826), Expect = 2.800e-84
Identity = 186/470 (39.57%), Postives = 272/470 (57.87%), Query Frame = 0
Query:    6 EKFENIGLSGQSVGTLTFTEKGVEWRGP-------SNAKAVQAKDILRATWCIFGKWGHLRLFL---RNGK------ALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGD-------LIFEDNTLVMALED---------KAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEEEE-------SGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDHRW-AFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGD--VRREYVFAQIDKEEHATLSQYLRDKQ 434
            + +++IGL G +VGT + T  G+ W+            + +  + I  A W +FGK GHLR+     R G+      A+R DGF  T  E + E     + + L+R +++S G+++G+       L+F    L  A ED           ++ L LG VSQCVLP  GN +NE+E+QF+E+D  +   D LV +RFY+PP  + +       + AE  Q  ++   +V+ ++G  +  F E +G FL PRGRY I LY +  RL G+KYD+K+ YDDI   FLL R D    AFVI L KPIRQGQQRYN LV+Q     SE+ +N+ E  L+++Y  ++EQ M G   +LVAKTFKV++ KKV+   +F ++     +KC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R  G  G TR+FDL +++    GD    +EY F+ IDK  +A L  +L  K+
Sbjct:    6 KSWKHIGLYGHAVGTFSATRHGIMWKSSVMGNDDIETKRVLPRESISGALWTVFGKSGHLRVLTKAPREGEQTKLPAAMRFDGFPGTDYEAMSEALRDLFGVTLKRHSMSSAGSSWGNTDISNKHLVFRQCNLEDADEDGQEFEPRDGDEMMSLDLGEVSQCVLP--GNNRNEIEMQFLESDTVEAGTDQLVALRFYVPPDADADPTDKDAPTSAEALQSRIMQIASVKKTSGSIIAEFDEGKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPRQDDMTVAFVIALDKPIRQGQQRYNMLVMQCTKEHSELNINLDEATLEKEYGGQIEQHMNGSFSNLVAKTFKVITRKKVFIPGKFANSNQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLCVSLHSTPGDSASTKEYTFSGIDKSNYAALYSFLSGKK 473          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: XP_009537818.1 (hypothetical protein PHYSODRAFT_348389 [Phytophthora sojae] >EGZ07054.1 hypothetical protein PHYSODRAFT_348389 [Phytophthora sojae])

HSP 1 Score: 318.5 bits (815), Expect = 5.300e-83
Identity = 172/427 (40.28%), Postives = 259/427 (60.66%), Query Frame = 0
Query:   15 GQSVGTLTFTEKGVEWRG--PSNAKAVQAKDILRATWCIFG-KWGHLRLFLRNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPP--GEEEESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVG--VTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQ 434
            G S G L  +  G+ WR     + K +   DI+   W   G K  HL+++ + GK +R  G      +++K    +++   LE+E +A+GG N+GD+ FE   L     + +V+ELPL  +SQC LPG    KNEVELQF E D    DE+ LVE+R Y+PP  GE+E   AE F++ VL + N+++  G ++V   E  G FL PRGRY + +Y +  R+HG  +D+K+ Y +I   FLLE P+    AFVI L++PIRQG+Q Y +LVLQ       + VNM+ +E+K KY   + + M G +  +VA  FK + GKKVY S +F++    R +KC++KA  G+L+PL+K+FMFI+KPT +I +++I+ + F R  G  G   +R+FDL ++ K + G+  REY+F+ ID+ E   LSQ+L  K+
Sbjct:   12 GHSAGVLVLSASGLLWRSRTTESQKKLLKDDIVTLLWTPVGPKTHHLKVYQKGGKYVRFTGLKAQDVQQLKSHVESHFDRELEQEKVAAGGGNWGDMKFEGPNLNFRTSNASVMELPLEQISQCALPG----KNEVELQFHEDDTVAGDEETLVEMRLYLPPGDGEDEVVTAEEFRQQVLEKANIRSVMGKSIVDLDESIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGLNTAFVISLEEPIRQGKQGYPHLVLQLSKNDVHIDVNMSAEEIK-KYNGNIHERMSGALPQIVATLFKFIIGKKVYTSGKFKTHSGDRAVKCAVKAQSGVLFPLEKSFMFIHKPTTFIRYEEIDYIEFQRYAGQSGSSASRNFDLLVSCKSVGGEAAREYIFSAIDRREFPELSQFLTSKK 433          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: XP_002899348.1 (FACT complex subunit SSRP1, putative [Phytophthora infestans T30-4] >EEY62317.1 FACT complex subunit SSRP1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 317.8 bits (813), Expect = 9.000e-83
Identity = 173/427 (40.52%), Postives = 257/427 (60.19%), Query Frame = 0
Query:   15 GQSVGTLTFTEKGVEWRG--PSNAKAVQAKDILRATWCIFG-KWGHLRLFLRNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPP--GEEEESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVG--VTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQ 434
            G S G L  +  G+ WR     + K +   DI+   W   G K  HL+++ + GK +R  G       ++K     ++   LE+E +A+GG N+GD+ FE   L     + +V+ELPL  +SQC LPG    KNEVELQF E D    DE+ LVE+R Y+PP  GEEE   AE F++ VL + N+++  G ++V   E  G FL PRGRY + +Y +  R+HG  +D+K+ Y +I   FLLE P+    AFVI L++PIRQG+Q Y +LVLQ       + VNM+ +E+K KY   + + M G +  +VA  FK + GKKVY S +F++    R +KC++KA  G+L+PL+K+FMFI+KPT +I +++I+ + F R  G  G   +R+FDL ++ K + G+  REY+F+ ID+ E   LSQ+L  K+
Sbjct:   12 GHSAGVLVLSASGLLWRSRTTESQKKLLKDDIVTLLWTPVGPKTHHLKVYQKGGKYVRFTGLKAQDVAQLKSHVEIHFDRELEQEKVAAGGGNWGDMKFEGPNLNFRTANASVMELPLEQISQCALPG----KNEVELQFHEDDTVAGDEETLVEMRLYLPPGDGEEEVVTAEEFRQEVLEKANIRSVMGKSIVDLDETIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGINTAFVISLEEPIRQGKQGYPHLVLQLSKNDVHIDVNMSSEEIK-KYNGNIHERMSGALPQIVATLFKFIIGKKVYTSGKFKTHSGERAVKCAVKAQSGVLFPLEKSFMFIHKPTTFIRYEEIDYIEFQRYAGQSGSSASRNFDLLVSCKSVGGEAAREYIFSAIDRREFPELSQFLTSKK 433          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: XP_002290767.1 (structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335] >EED92519.1 structure specific recognition protein 1 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 316.2 bits (809), Expect = 2.600e-82
Identity = 171/408 (41.91%), Postives = 251/408 (61.52%), Query Frame = 0
Query:   44 ILRATWCIFGKWGHLRLFLRN--------GKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPPGEEEE-------SGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLL-ERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKITMKPLDGD--VRREYVFAQIDKEEHATLSQYLRDKQ 434
            I  A W IFGK GHLR+  +           ALR DGF  +  +R+ E F T Y + L+R +++S GA++G+    +  L    + + +L L LG VSQCVLP  GN +NE+E+QF+E+D  +   D LV +RFY+PP ++ +       + AE+ Q  +    +V+ ++G  +  F E++G FL PRGRY I LY +  RL G+KYD+K+ YDDI   FLL ++ D   AFVI L KPIRQGQQRYN LV+Q     SE+ +N+ +  ++++Y   ++  M G   +LVAKTFKV++ KKV+   +F +A     +KC+L+A+EG LYPL+K F+FI+KP + I F +IESV F R  G  G TR+FDL +++    GD    +EY F+ IDK  +A+L  +L  K+
Sbjct:   18 IAGALWTIFGKSGHLRVLTKTLEGSKTKLPAALRFDGFPPSDFDRLTEAFQTMYGITLKRHSMSSAGASWGNTDIANKHLFEPRDGEEMLSLDLGEVSQCVLP--GNNRNEIEMQFLESDTVEAGTDQLVAIRFYVPPDQDADPTDKDAPTSAELLQSRITEVASVKKTSGAIIAEFDENKGTFLTPRGRYSIELYDSFLRLRGAKYDYKIKYDDISRLFLLPKQDDMHMAFVIALDKPIRQGQQRYNMLVMQCTKEQSELNINLDDATIEKEYNGEIQAHMNGSFSNLVAKTFKVITKKKVFIPGKFANANQQACVKCALRANEGHLYPLEKQFIFIHKPAVLIRFDEIESVEFQRYAGGQGSTRNFDLSVSLINTPGDNLAVKEYTFSGIDKTNYASLYSFLSQKK 423          
BLAST of NO26G00990 vs. NCBI_GenBank
Match: POM80838.1 (FACT complex subunit SSRP1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 315.5 bits (807), Expect = 4.500e-82
Identity = 171/427 (40.05%), Postives = 258/427 (60.42%), Query Frame = 0
Query:   15 GQSVGTLTFTEKGVEWRG--PSNAKAVQAKDILRATWCIFG-KWGHLRLFLRNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALASGGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQFIETDAADRDEDALVEVRFYIPP--GEEEESGAEVFQKNVLARTNVQASTGDALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLLERPDH-RWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEKYEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKASEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVG--VTRSFDLKITMKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQ 434
            G S G L  +  G+ WR     + K +   DI+   W   G K  HL+++ + GK +R  G       ++K    +++   LE+E +A+GG N+GD+ FE   L     + +V+ELPL  +SQC LPG    KNEVELQF E D    DE+ LVE+R Y+PP  G++E   AE F++ VL + N+++  G ++V   E  G FL PRGRY + +Y +  R+HG  +D+K+ Y +I   FLLE P+    AFVI L++PIRQG+Q Y +LVLQ       + VNM+ +E+K KY   + + M G +  +VA  FK + GKKVY S +F++    R +KC++KA  G+L+PL+K+FMFI+KPT +I +++I+ + F R  G  G   +R+FDL ++ K + G+  REY+F+ ID+ E   LSQ+L  K+
Sbjct:   12 GHSAGVLVLSASGLLWRSRTTESQKKLLKDDIVTLLWTPVGPKTHHLKVYQKGGKYVRFTGLKAQDVAQLKSHVESHFDRELEQEKVAAGGGNWGDMKFEGPNLNFRTANASVMELPLEQISQCALPG----KNEVELQFHEDDTVAGDEETLVEMRLYLPPGDGDDEVVTAEEFRQEVLEKANIRSVMGKSIVDLDETIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGINTAFVISLEEPIRQGKQGYPHLVLQLSKNDVHIDVNMSAEEIK-KYNGNIHERMSGALPQIVATLFKFIIGKKVYTSGKFKTHSGDRAVKCAVKAQSGVLFPLEKSFMFIHKPTTFIRYEEIDYIEFQRYAGQSGSSASRNFDLLVSCKSVGGEAAREYIFSAIDRREFPELSQFLTSKK 433          
The following BLAST results are available for this feature:
BLAST of NO26G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23164.19.800e-25587.56fact complex subunit ssrp1 [Nannochloropsis gadita... [more]
CBJ29726.13.100e-9943.58conserved unknown protein [Ectocarpus siliculosus][more]
OEU20514.12.500e-8843.88SSrecog-domain-containing protein, partial [Fragil... [more]
GAX21600.14.200e-8839.48structure-specific recognition protein 1 [Fistulif... [more]
GAX14828.12.100e-8739.70structure-specific recognition protein 1 [Fistulif... [more]
EJK70063.12.800e-8439.57hypothetical protein THAOC_08612 [Thalassiosira oc... [more]
XP_009537818.15.300e-8340.28hypothetical protein PHYSODRAFT_348389 [Phytophtho... [more]
XP_002899348.19.000e-8340.52FACT complex subunit SSRP1, putative [Phytophthora... [more]
XP_002290767.12.600e-8241.91structure specific recognition protein 1 [Thalassi... [more]
POM80838.14.500e-8240.05FACT complex subunit SSRP1 [Phytophthora palmivora... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005971NSK005971Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00990.1NO26G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600534gene_7922Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g46gene7314Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00990.1NO26G00990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00990 ID=NO26G00990|Name=NO26G00990|organism=Nannochloropsis oceanica|type=gene|length=3179bp
CAACAGAAGCCAGAAAGAAGCGGCGACTCCCTTCGTAACCTGGAGCGCCC
CGCCAAACACAACCAGCAGCACCACAATAACGACGCCACGCCTGCATCCA
ACCCCTCCTCTCCTACAGTATCATGGCCGCCATTGTGGAGAAGTTCGAGA
ACATAGGTCTGTCCGGCCAGTCGGTGGGTACGCTGACCTTCACGGAAAAG
GGGGTGGAATGGCGAGGCCCTAGTAATGCCAAGGCCGTGCAAGCTAAGGA
CATCCTGCGTGCGACCTGGTGTATATTTGGAAAGTGGGGCCATCTCCGAC
TGTTCCTCAGGAATGGTAAGGCCTTGCGCTGCGACGGTTTTGTGCGTACC
CAAGAGGAACGAGTAAAGGAGATTTTTGGGACCAACTACTCCCTGGCCTT
GGAACGAGAGGCCCTCGCCTCCGGGGGGGCGAATTATGGCGACTTGATTT
TTGAGGATAATACTTTGGTGATGGCTTTGGAAGATAAGGCGGTGTTGGAG
CTCCCGTTGGGGGCGGTGTCTCAATGTGTGTTGCCCGGGACGGGGAATGT
GAAGAACGAGGTGGAATTGCAGTTTATTGAGACGGACGCGGCGGACCGAG
ACGAGGACGCTCTGGTGGAAGTGAGGTTCTACATCCCACCGGGGGAGGAA
GAGGAGAGCGGGGCAGAGGTCTTCCAGAAAAATGTTTTGGCGAGGACGAA
TGTACAAGCCTCGACAGGCGATGCGCTCGTGACGTTCGCGGAGGATGAAG
GTTTCTTCCTTTACCCCCGCGGGCGGTACGTGATTAATCTGTACGCGAAT
TCCTTCCGGTTGCACGGCTCGAAATACGATCACAAGATGGCATACGATGA
CATCATTCACTTCTTCCTGTTGGAGCGGCCGGACCACCGGTGGGCCTTTG
TGATTGGGCTGAAGAAACCGATTCGACAGGGCCAGCAGCGGTACAACTAC
TTAGTTCTGCAGgtgagtacgtaccctccctccctccctccttccctctc
ttcccttcctccctctcttcctatcgtctttacgttactacttgatactg
catatctctgtttgtgccgtccctccctctccccccttccctccttcact
ccctcccggagacatgcccgaaggtaggccgaagcatactagaccaggcc
cttggcatcacgccacttgtccaccctccaacccttcctcccccccccct
ttcccttagACGCACGATGGCGTCAGCGAGGTGACGGTGAACATGACCGA
GGACGAGCTCAAGGAGAAGTATGAGGACCGGCTTGAGCAGGCCATGGGCG
GGCCCATGCACCACCTGGTGGCCAAAACCTTTAAGGTCTTGTCCGGGAAA
AAAGTCTACCACTCCCAGCGCTTCGAATCGGCACGGAACGTGCGGTGGAT
CAAGTGCTCCTTGAAGGCCAGCGAGGGACTGCTCTACCCTCTGGACAAGg
tgggtgcctccctcctttcctccctccctccctccctccctcccaaccgg
ccccgtgcaaaagaaacgacatccacacgccaagactactccctgaccgc
ccttctaactctccctccctccctcccccagGCCTTCATGTTCATCTACA
AGCCCACGCTCTACATCCCCTTCAAGGACATCGAGTCCGTTGCCTTCGAT
CGTGTCGGCGGCGCCGTGGGTGTCACTCGTTCCTTTGACCTTAAGATTAC
CATGAAGCCGCTGGATGGAGACGTGCGACGAGAGTATGTCTTTGCGCAGg
tacatgcttatgggaggctgccgtggtttgttctttttctttctttcttc
tctctgttgagtttttttaaggggggaatgggggggaggggtcacttctc
tcgctcttacgcttttctaccttctgttgtgaatggattggtgaggacag
gctcggcgccaacacgtagtgtcaatatctgcggaacaacgagcagtccg
tgactcaagtgagaagacatgggccagggtcgcttgctgtgatgacacac
gcaccttcgtttttttgtttttttttaaccatccctccctccttccctga
aaaccagATTGACAAGGAGGAGCACGCCACATTGAGTCAATATCTGCGGG
ACAAGCAGACGATAAGGGTCATAGACGACAAGCCCGTGAGTCAGGCTAAG
ATCGACCGGATGTTGGAGGAGGAGGAGGACGGGGGGGAGGATGAAGACGA
CGATGACGAGGAAGACGAGAGCTACAAAGGGCAGGATAGCGGTAGCGAGG
GCAATGGTGGGAGCGGGAGTGGAGGGGATGGCTCTGATGACAGTGATGGG
AGTAGCAGCGGGGCCGAGATGGTGGAGGAGAGTGATCTGGAGTCAATGAC
GGGGAGGAAGAAGGAGAAGAAATCCAAGGCGGGAGAAGGGAAGAAGAAGA
GGGAGAAAAAGGGTAAGGGGAACGATGACGACGACAGTGACAGTGGCAAT
GACAGCGACAGTGATGAGGAGGGAGGAGGGAAGAAGAGGAAGAAGGGCGG
GAAGGCCGCAGGGTTGACGAAGGGAGGGAAGAAAAAGCGGGCCAAAAAAG
ACCCCAACGCCCCTAAGAAGTCATTAAGTGGGTATATGCTCTTTACACAA
GCGTCGCGGGAACAGCTGAAGGTGGAGCAGCCTAGTTTGAAGGTCACAGA
GGTGAGCAAGGTGATGGGGGAGAGATGGAGGGGGATGTCGGCGGAGGAGA
AGAAGCCGTTTGAGGACCAAGCGAAGGAGGCCAAGATAAAGTACTTGGAG
GACGTGCAGGCGTATAAGGAGAAAAAGAAGGCGGAGGGCAGGGACGAGGA
CGAGGAGGAGGACGAGGAGGATGGAGAGAAGACGAGGAAGGGGGAGAAAA
AGAAGGCCAAGGGGGAAAGCAGTGGAAGTGAGGATTCAGATAGTGATGAT
AATTCGGACGCGAGCAGCGGAAGCGGTGGAGGAGAGGCTGGAAATAAGAG
CAAGCCTACGAAGGCTATTGCCCCGGAGCCACCGACGAGAAAGGCGACTA
GGGCCACGGGGGGGAGACGGTAGAGCTAGTGAGCAGCGATGGTGAGGAGA
GTTCCGTTGCGAGTGAATCTTCCGCGGACAGTGGGAGCAGCGGGGAAGGG
AGCGATGATAGTGACGAGGAGGGAAGTGATTAGATGAGTGTAGAAACGAG
GGAGGGAGAGAAGGAAGGAGGGAGGGAGG
back to top

protein sequence of NO26G00990.1

>NO26G00990.1-protein ID=NO26G00990.1-protein|Name=NO26G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MAAIVEKFENIGLSGQSVGTLTFTEKGVEWRGPSNAKAVQAKDILRATWC
IFGKWGHLRLFLRNGKALRCDGFVRTQEERVKEIFGTNYSLALEREALAS
GGANYGDLIFEDNTLVMALEDKAVLELPLGAVSQCVLPGTGNVKNEVELQ
FIETDAADRDEDALVEVRFYIPPGEEEESGAEVFQKNVLARTNVQASTGD
ALVTFAEDEGFFLYPRGRYVINLYANSFRLHGSKYDHKMAYDDIIHFFLL
ERPDHRWAFVIGLKKPIRQGQQRYNYLVLQTHDGVSEVTVNMTEDELKEK
YEDRLEQAMGGPMHHLVAKTFKVLSGKKVYHSQRFESARNVRWIKCSLKA
SEGLLYPLDKAFMFIYKPTLYIPFKDIESVAFDRVGGAVGVTRSFDLKIT
MKPLDGDVRREYVFAQIDKEEHATLSQYLRDKQTIRVIDDKPVSQAKIDR
MLEEEEDGGEDEDDDDEEDESYKGQDSGSEGNGGSGSGGDGSDDSDGSSS
GAEMVEESDLESMTGRKKEKKSKAGEGKKKREKKGKGNDDDDSDSGNDSD
SDEEGGGKKRKKGGKAAGLTKGGKKKRAKKDPNAPKKSLSGYMLFTQASR
EQLKVEQPSLKVTEVSKVMGERWRGMSAEEKKPFEDQAKEAKIKYLEDVQ
AYKEKKKAEGRDEDEEEDEEDGEKTRKGEKKKAKGESSGSEDSDSDDNSD
ASSGSGGGEAGNKSKPTKAIAPEPPTRKATRATGGRR*
back to top
Synonyms
Publications