NO26G00970, NO26G00970 (gene) Nannochloropsis oceanica

Overview
NameNO26G00970
Unique NameNO26G00970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2423
Alignment locationchr26:317815..320237 +

Link to JBrowse

Properties
Property NameValue
DescriptionSuppressor of mec-8 and unc-52 protein homolog 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:317815..320237 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR012916RED_N
Vocabulary: Biological Process
TermDefinition
GO:0007094mitotic spindle assembly checkpoint
Homology
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_005651009.1 (hypothetical protein COCSUDRAFT_64504 [Coccomyxa subellipsoidea C-169] >EIE26465.1 hypothetical protein COCSUDRAFT_64504 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 79.3 bits (194), Expect = 4.200e-11
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 0 
Query:  196 NEDGTYRDRAEERRKGINPDYD---DEITRLV-----------HMDAEKTKYLGGDVKHTHLVKGLDYALLQKVRTEM 260
            +++  YRDRAEERRKG NPDY+    ++  +V            +  E +K+LGGDV HTHLVKGLDYALLQKVR EM
Sbjct:   71 DDEPLYRDRAEERRKGFNPDYERVNADLANIVTGNSLLEQDIGQISVEDSKFLGGDVDHTHLVKGLDYALLQKVRGEM 148
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: PSC75075.1 (suppressor of mec-8 and unc-52-like protein 2 [Micractinium conductrix])

HSP 1 Score: 79.0 bits (193), Expect = 5.500e-11
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0 
Query:  186 PGGVAGAGGMNEDG-TYRDRAEERRKGINPDYD---DEITRLVH-------MDAEKTKYLGGDVKHTHLVKGLDYALLQKVRTE 259
            PGG  G  G  E+G  YRDRA ERRKG++ D++   D++  L+        +  E +KYLGGDV HTHLVKGLD+ALLQKVR E
Sbjct:   56 PGGKLGEDGEKEEGPQYRDRAAERRKGLSADFEGVPDDLVGLLEGKGDLRGVSYEDSKYLGGDVAHTHLVKGLDFALLQKVRAE 139
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BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_002053185.2 (LOW QUALITY PROTEIN: uncharacterized protein Dvir_GJ23479, partial [Drosophila virilis] >EDW66705.2 LOW QUALITY PROTEIN: uncharacterized protein Dvir_GJ23479, partial [Drosophila virilis])

HSP 1 Score: 77.0 bits (188), Expect = 2.100e-10
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 0 
Query:  201 YRDRAEERRKGINPDYDDEIT----------RLVHMD--------------AEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEE 264
            YRDRA ERR G NPDY +  T          R V  D               +++K+LGGD+KHTHLVKGLDYALLQKVR+E+H +E
Sbjct:   95 YRDRARERRDGANPDYQNASTPGHGSSTNAYRAVAPDMKSGVDAAERRRRIIQESKFLGGDMKHTHLVKGLDYALLQKVRSELHSKE 181
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: ORY46473.1 (hypothetical protein BCR33DRAFT_715546 [Rhizoclosmatium globosum])

HSP 1 Score: 77.0 bits (188), Expect = 2.100e-10
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0 
Query:  201 YRDRAEERRKGINPDYDDEITRLVHMDA----------------EKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEEE 265
            +RDRA ERR+GINPDY D    L  + A                E++KYLGGDV HTHLVKGLD+ALL+KVR+E+  + +
Sbjct:   70 FRDRASERRQGINPDYKDSEDILARLTAAEEKEGDIKDIKSVIYEQSKYLGGDVTHTHLVKGLDFALLKKVRSELQKDHK 149
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: KFK32507.1 (hypothetical protein AALP_AA6G251600 [Arabis alpina])

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-10
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 0 
Query:  196 NEDGTYRDRAEERRKGINPDYDDEITRLVH-----------------MDAEKTKYLGGDVKHTHLVKGLDYALLQKVRTEM 260
            ++D  YRDRA+ERR+  NPDYD       H                 M  E +KYLGGDV+HTHLVKGLDYALL KVR+E+
Sbjct:   27 SDDPKYRDRAKERRENQNPDYDPTELSSFHAVAPPGAVDLRAADALKMSIENSKYLGGDVEHTHLVKGLDYALLNKVRSEI 107
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_017774683.1 (PREDICTED: protein Red [Nicrophorus vespilloides])

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-10
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0 
Query:  201 YRDRAEERRKGINPDYDDE-------ITRLVHMD--------------AEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEEE 265
            YRDRA ERR+G NPDY +E         R V  D               +++K+LGGD++HTHLVKGLDYALLQKVR+E+H +E+
Sbjct:   85 YRDRASERRQGSNPDYQNEDPMNTAQAYRAVAPDLKSGFDAAERRRQMIQESKFLGGDMEHTHLVKGLDYALLQKVRSEIHHKEQ 169
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_003057706.1 (predicted protein, partial [Micromonas pusilla CCMP1545] >EEH57657.1 predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 76.3 bits (186), Expect = 3.500e-10
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 0 
Query:  197 EDGTYRDRAEERRKGINPDYDDEI--TRLVHMDAEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEEE 265
            E  TYRDRA+ERR   N DY+ +     L  +  E++K+LGGDV+HTHLVKGLD+ALL+KVR E+ + E+
Sbjct:    4 EGPTYRDRAKERRNETNADYEGDRGGAALEGLSIEESKFLGGDVEHTHLVKGLDFALLKKVRAEIRESEK 73
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_005830611.1 (hypothetical protein GUITHDRAFT_153228 [Guillardia theta CCMP2712] >EKX43631.1 hypothetical protein GUITHDRAFT_153228 [Guillardia theta CCMP2712])

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-10
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:  198 DGTYRDRAEERRKGINPDYDDEITRLVHMDAEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEEE 265
            D  YRDRA+ERR GI+ ++      +  +  E++KYLGGD++HTHLVKGLD+ALL K+R+EM   EE
Sbjct:   59 DSQYRDRAKERRMGISSEFMISEDAVKDLTVEESKYLGGDMEHTHLVKGLDFALLAKMRSEMQTAEE 125
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: ENN71461.1 (hypothetical protein YQE_11878, partial [Dendroctonus ponderosae])

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-10
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 
Query:  201 YRDRAEERRKGINPDY--DDEIT-----RLVHMD--------------AEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEE 264
            YRDRA ERRKG+NPDY  DD +      R V  D               +++K+LGGD++HTHLVKGLDYALLQKVR+E+  +E
Sbjct:  227 YRDRAGERRKGVNPDYQVDDPVATAQAYRAVAPDLKSGYDAAERRRQMIQESKFLGGDMEHTHLVKGLDYALLQKVRSEIQHKE 310
[Close]
BLAST of NO26G00970 vs. NCBI_GenBank
Match: XP_019769908.1 (PREDICTED: protein Red [Dendroctonus ponderosae] >ERL92566.1 hypothetical protein D910_09879 [Dendroctonus ponderosae])

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-10
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0 
Query:  201 YRDRAEERRKGINPDY--DDEIT-----RLVHMD--------------AEKTKYLGGDVKHTHLVKGLDYALLQKVRTEMHDEE 264
            YRDRA ERRKG+NPDY  DD +      R V  D               +++K+LGGD++HTHLVKGLDYALLQKVR+E+  +E
Sbjct:   87 YRDRAGERRKGVNPDYQVDDPVATAQAYRAVAPDLKSGYDAAERRRQMIQESKFLGGDMEHTHLVKGLDYALLQKVRSEIQHKE 170
The following BLAST results are available for this feature:
BLAST of NO26G00970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005651009.14.200e-1153.85hypothetical protein COCSUDRAFT_64504 [Coccomyxa s... [more]
PSC75075.15.500e-1153.57suppressor of mec-8 and unc-52-like protein 2 [Mic... [more]
XP_002053185.22.100e-1049.43LOW QUALITY PROTEIN: uncharacterized protein Dvir_... [more]
ORY46473.12.100e-1050.00hypothetical protein BCR33DRAFT_715546 [Rhizoclosm... [more]
KFK32507.12.700e-1050.62hypothetical protein AALP_AA6G251600 [Arabis alpin... [more]
XP_017774683.12.700e-1049.41PREDICTED: protein Red [Nicrophorus vespilloides][more]
XP_003057706.13.500e-1054.29predicted protein, partial [Micromonas pusilla CCM... [more]
XP_005830611.14.600e-1053.73hypothetical protein GUITHDRAFT_153228 [Guillardia... [more]
ENN71461.14.600e-1051.19hypothetical protein YQE_11878, partial [Dendrocto... [more]
XP_019769908.14.600e-1051.19PREDICTED: protein Red [Dendroctonus ponderosae] >... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005972NSK005972Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00970.1NO26G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673097gene_7920Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00970.1NO26G00970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00970 ID=NO26G00970|Name=NO26G00970|organism=Nannochloropsis oceanica|type=gene|length=2423bp
ATGTGGGGTAGGCAGAGAGGAGGTGAAGGGGAGGGAGGAGGAAAGGAGGA
GGAGAAGGAGGAGGAGGAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGAAGGAGGAGGAGGAGGAGGAGGAGGAGAACGGGAATGAGCAGGGAGAG
GATTgtaaattgaaagggcacgaaaataaaaattaaatggaatttgaaaa
tttggcctccccggcatcgcgtcgtttgtcagcaacatcgctgcctttgg
cttctcatgtgatttttaggctcgactgcggcccgtctgggggtgcctgt
tggcacaaaggcaactcattctccgccgctcggcagcaaaacccgttatg
ttcatcattgtgaggaaatcatacatcctgggagccatgtcgggtggcga
gcactgcctccccttcgcttttaccttctcgcccagtaacaccatgtata
tgtatctgtagaacaaggaggtagtgtcgtgttcctggtggtgctgaatt
gcttgggtccctcttgtatgtcttcctgtcttcactagAAATTACCATGG
AACAAGCATCATTATCAAGTCTACCTTCCCTCCCCCCTCACTTCCTCCAC
TGTCATGCCTCCCACTACGCATTAAACACCAATCACAGGATCGGCAGCAA
GAGCATGGACAACGCCGACTTTAGGAAGCTGCTCGCTTCGTCCTCGGCCA
GCGGCGGTGGAGTTGGAGAAGGCGGCGATGATAATGGAGGAGGAGGAGGG
CGGGGGGGAGGTGGGTTTGATGGAGCGTTCAAGAAGCGGAAGAAAAAGAC
CCAAACGGAGTATGTGGCCAAGGGAGCCGGGGGACGTGTGGATCGAAACC
ATCTGATGGAGGCGATGGAGAGGGATGAGAAGATTCGGGCACAGAGGGGG
GGGGCGAGGGGGAGGTATGACGACGAGGAGGACGAGGAGGAGGAAGGGAG
GGTGGGAGGAAGGAGGAATGGTGGTGGGGAGGAAGGGGACGACGAGGACG
AGGAGGAGGGAGAGGGTGGATATCCGGGTAGGAAAAAGGGGGGCAAAGTG
GAGGAGAGTGGGAGTGGAGGGCTGCAAGCGTTGGCGTCATCTTCCTCCCT
TCCTGGAGGCGTCGCTGGAGCGGGAGGGATGAATGAGGACGGGACGTATC
GTGATCGAGCGGAGGAGAGACGAAAGGGCATAAATCCTGATTATGATGAT
GAGATCACCCGGCTTGTGCATATGGATGCAGAAAAGACCAAATATCTAGG
CGGGGATGTGAAGCATACCCATTTGGTCAAAGGCTTGGACTATGCGTTGT
TGCAGAAGGTAAGGACGGAAATGCATGATGAGGAGGAGGGAGGCAAGGAT
GATGGGGATGATGAGGACGGAGGGAAGGGAAAGAAGGAGAAGGGGAGGGC
AGAACAGGAGGGGTTGAAGGAGTGGAAGAGGAATTGTTTGGTGGGGGTGT
TGCCGAGGACGATGTTGGGGAGGGGGCTCAAGGCCTTTTGGGTGCAGAGT
TTAAGTGAAGAGATAAAGCCAGTGGAGATGTTCAAGATGACCGTGTTGGA
GTACAGGCTTCGCGAGGACGACGAGGAAGAGGAGGAGGGTGAGGAGGAGG
GCAGGAGGGGTTTGCCGACGATAGTTAGCAGGAGTAAGGTTGAGgtggaa
gcggaacaggactcgcctatgatgctttacgcactacccggtgtactact
agggaagattaaaagggcctttgagagtcatcggcaggttttggcggggc
ttaagaaaaaggggaagaagaggcatcgggcggaggaggaatatgggcat
agAGCAGCAGCAGGGAGGGGGAGGGAGAGAGGGAGGAAGAGGCTGGTGGG
GGGGAGGAGGAGGAGGTGACGATGAAAGTGGAGGTGGGGGATATATTTGG
TGATTCGGTGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGTGGGAG
GGGTGAAGCAGCAGCAGCAGCAGCAGCAGCCACCGAAGGCGTCAGTGTTG
AGGGAACTGGGATGGGACAAGGAGGAGGATGGAGAGCCGGGAGGAGAAGG
GAATGGAGGGAGGGCGGTGGACATGGCAGCTATTTTGAAGGACGCGGGAG
TAGAGGAGAACGGGGGGAAAGGGGATAGGAAGGGAGGAGAGGAGGAGCTG
CAGCCTGAGCTGTTTGCGAGGACCAAGGCGGGAGTGAAGAAGAGGAGGGA
GGAAAGGAGAGAAGGGGGGTTGGCGATGCAGATGGGAGGAGGGTACGAGG
AGTACTTGCCGTCTGCAACTTTTGATGTGGATAGTGATGAAGAGGGAGGG
AAGGAGGGAGGGAGGGAGGGGGAGGGCGTAGGGGTGGGGGGGGAGGGGGG
AAGAGGAGGGAACGAGTGTCAGGCAACCAAGAATAAAAGGGTTGAGAAAG
ACATCTACAAGAGAGATATATAG
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protein sequence of NO26G00970.1

>NO26G00970.1-protein ID=NO26G00970.1-protein|Name=NO26G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MEQASLSSLPSLPPHFLHCHASHYALNTNHRIGSKSMDNADFRKLLASSS
ASGGGVGEGGDDNGGGGGRGGGGFDGAFKKRKKKTQTEYVAKGAGGRVDR
NHLMEAMERDEKIRAQRGGARGRYDDEEDEEEEGRVGGRRNGGGEEGDDE
DEEEGEGGYPGRKKGGKVEESGSGGLQALASSSSLPGGVAGAGGMNEDGT
YRDRAEERRKGINPDYDDEITRLVHMDAEKTKYLGGDVKHTHLVKGLDYA
LLQKVRTEMHDEEEGGKDDGDDEDGGKGKKEKGRAEQEGLKEWKRNCLVG
VLPRTMLGRGLKAFWVQSLSEEIKPVEMFKMTVLEYRLREDDEEEEEGEE
EGRRGLPTIVSRSKVESSSREGEGEREEEAGGGEEEEVTMKVEVGDIFGD
SVGGKEGGKEGGKVGGVKQQQQQQQPPKASVLRELGWDKEEDGEPGGEGN
GGRAVDMAAILKDAGVEENGGKGDRKGGEEELQPELFARTKAGVKKRREE
RREGGLAMQMGGGYEEYLPSATFDVDSDEEGGKEGGREGEGVGVGGEGGR
GGNECQATKNKRVEKDIYKRDI*
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Synonyms
Publications