NO26G00890, NO26G00890 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00890
Unique Name	NO26G00890
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2580
Alignment location	chr26:294963..297542 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:294963..297542 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_002962167.2 (uncharacterized protein LOC9658269 [Selaginella moellendorffii])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-9
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 0

Query:  235 DDQGPHEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTL 367
            D +  + PLP+L+  LLLIWT L  IW  +T R+                   S L  +L+ VP+ K  ++ LS  FW +C+  G CSFW+   +   ++ +ET       L++ G+CI        E R++
Sbjct:   18 DWEALYRPLPFLFFGLLLIWTTLVGIWTLNTWRKRQWQ--------------TSNLQWILTAVPVLKALVLALSFAFWYSCLHLGTCSFWVAFGVFVTRIFFETACFISFLLISHGYCIMHEQLSISERRSI 135

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_002965078.2 (uncharacterized protein LOC9658457 [Selaginella moellendorffii])

HSP 1 Score: 73.6 bits (179), Expect = 3.500e-9
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 0

Query:  235 DDQGPHEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTL 367
            D +  + PLP+L+  LLLIWT L  IW  +T R+                   S L  +L+ VP+ K  ++ LS  FW +C+  G CSFW+   +   ++ +ET       L++ G+CI        E R++
Sbjct:   18 DWEALYRPLPFLFFGLLLIWTTLVGIWTLNTWRKRQWQ--------------TSNLQWILTAVPVLKALVLALSFAFWYSCLHLGTCSFWVAFGVFVTRIFFETACFISFLLISHGYCIMHEQLSISERRSI 135

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_009396526.1 (PREDICTED: uncharacterized protein LOC103981503 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.500e-7
Identity = 49/186 (26.34%), Postives = 78/186 (41.94%), Query Frame = 0

Query:  240 HEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTLILLICAFXXXXXXXXXXXXXXLSPLIFWLCTALLYGSAYSYVIYNVYQRLSYLHHQITF 426
            + PLP LY++ L IW   +F W  +T R  N  P              S L  +L+ +P+TK   + LS +FW +C+    CS W+   +    +L++T +     L++ G+CI        E R    L C                 + L+      L Y  ++  +  +  Q LS LH Q+TF
Sbjct:   25 YRPLPSLYLAFLAIWAISAFAWTINTWR--NRFPQ------------TSNLQWMLASIPLTKTLQLALSSSFWYSCINLQICSLWMSFGVYVTGILFQTASFVSFMLISHGYCIIYERLSVRERRMTAALSCILYLTLVGYRAAVPYFTAFLL------LNYSLSFYIIFRHTSQNLSVLHEQLTF 190

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_024389893.1 (uncharacterized protein LOC112289162 isoform X2 [Physcomitrella patens] >XP_024389894.1 uncharacterized protein LOC112289162 isoform X2 [Physcomitrella patens] >XP_024389895.1 uncharacterized protein LOC112289162 isoform X2 [Physcomitrella patens] >PNR43916.1 hypothetical protein PHYPA_016299 [Physcomitrella patens])

HSP 1 Score: 66.2 bits (160), Expect = 5.500e-7
Identity = 45/184 (24.46%), Postives = 78/184 (42.39%), Query Frame = 0

Query:  240 HEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTLILLICAFXXXXXXXXXXXXXXLSPLIFWLCTALLYGSAYSYVIYNVYQRLSYLHHQI 424
            + PLPY++  LL++W  L   W  +T  +                   S L  +L+ VP+ K  ++ LS  FW +C+T  +CSFW+   +   ++ +ET  L    L+A G+CI   +    E R++  L                       F +   L+YG     ++ ++ + LS L  Q+
Sbjct:   23 YRPLPYVFFGLLIVWMVLVLAWTFNTWTKRQWQ--------------ISNLQWLLTVVPVLKSLVLGLSFIFWYSCLTLSFCSFWVAFGVFVSRIFFETACLIAFLLIAHGYCIMHENLSVSERRSIAGLASLLYLTLIGYKAAVPQ------FAVLVVLIYGFLLYIIMVHIARNLSVLREQL 186

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_024389892.1 (uncharacterized protein LOC112289162 isoform X1 [Physcomitrella patens])

HSP 1 Score: 66.2 bits (160), Expect = 5.500e-7
Identity = 45/184 (24.46%), Postives = 78/184 (42.39%), Query Frame = 0

Query:  240 HEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTLILLICAFXXXXXXXXXXXXXXLSPLIFWLCTALLYGSAYSYVIYNVYQRLSYLHHQI 424
            + PLPY++  LL++W  L   W  +T  +                   S L  +L+ VP+ K  ++ LS  FW +C+T  +CSFW+   +   ++ +ET  L    L+A G+CI   +    E R++  L                       F +   L+YG     ++ ++ + LS L  Q+
Sbjct:   43 YRPLPYVFFGLLIVWMVLVLAWTFNTWTKRQWQ--------------ISNLQWLLTVVPVLKSLVLGLSFIFWYSCLTLSFCSFWVAFGVFVSRIFFETACLIAFLLIAHGYCIMHENLSVSERRSIAGLASLLYLTLIGYKAAVPQ------FAVLVVLIYGFLLYIIMVHIARNLSVLREQL 206

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_024389896.1 (uncharacterized protein LOC112289162 isoform X3 [Physcomitrella patens])

HSP 1 Score: 66.2 bits (160), Expect = 5.500e-7
Identity = 45/184 (24.46%), Postives = 78/184 (42.39%), Query Frame = 0

Query:  240 HEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTLILLICAFXXXXXXXXXXXXXXLSPLIFWLCTALLYGSAYSYVIYNVYQRLSYLHHQI 424
            + PLPY++  LL++W  L   W  +T  +                   S L  +L+ VP+ K  ++ LS  FW +C+T  +CSFW+   +   ++ +ET  L    L+A G+CI   +    E R++  L                       F +   L+YG     ++ ++ + LS L  Q+
Sbjct:   22 YRPLPYVFFGLLIVWMVLVLAWTFNTWTKRQWQ--------------ISNLQWLLTVVPVLKSLVLGLSFIFWYSCLTLSFCSFWVAFGVFVSRIFFETACLIAFLLIAHGYCIMHENLSVSERRSIAGLASLLYLTLIGYKAAVPQ------FAVLVVLIYGFLLYIIMVHIARNLSVLREQL 185

[Close]

BLAST of NO26G00890 vs. NCBI_GenBank
Match: XP_024372633.1 (uncharacterized protein LOC112280916 [Physcomitrella patens] >XP_024372635.1 uncharacterized protein LOC112280916 [Physcomitrella patens] >XP_024372636.1 uncharacterized protein LOC112280916 [Physcomitrella patens] >XP_024372637.1 uncharacterized protein LOC112280916 [Physcomitrella patens] >XP_024372638.1 uncharacterized protein LOC112280916 [Physcomitrella patens] >PNR54771.1 hypothetical protein PHYPA_005664 [Physcomitrella patens])

HSP 1 Score: 65.5 bits (158), Expect = 9.400e-7
Identity = 46/184 (25.00%), Postives = 76/184 (41.30%), Query Frame = 0

Query:  240 HEPLPYLYVSLLLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPITKVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKGWCITRSSFQPHEWRTLILLICAFXXXXXXXXXXXXXXLSPLIFWLCTALLYGSAYSYVIYNVYQRLSYLHHQI 424
            ++PLP L+  LL+IW  L F W  +T  +  L                S L  +L+ VP+ K  ++ LS  FW +C+    CSFW+   +   ++ +ET       L+A G+CI        E R++  L                       F +   L+YG     ++ ++ + LS L  Q+
Sbjct:   23 YKPLPCLFFGLLIIWVVLVFAWTFNTWTKRQLQ--------------TSNLQWMLTAVPVLKSLVLALSFIFWYSCLNSSTCSFWVAFGVFVSRIFFETVCFMAFLLIAHGYCIMHDQLPVTERRSIAGLASLLYLTLTGYKAAVPQ------FTVLVVLIYGLILYVIMVHIARNLSLLREQL 186

The following BLAST results are available for this feature:

BLAST of NO26G00890 vs. NCBI_GenBank

BLAST of NO26G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7


Match Name	E-value	Identity	Description
XP_002962167.2	3.500e-9	30.30	uncharacterized protein LOC9658269 [Selaginella mo...	[more]
XP_002965078.2	3.500e-9	30.30	uncharacterized protein LOC9658457 [Selaginella mo...	[more]
XP_009396526.1	1.500e-7	26.34	PREDICTED: uncharacterized protein LOC103981503 [M...	[more]
XP_024389893.1	5.500e-7	24.46	uncharacterized protein LOC112289162 isoform X2 [P...	[more]
XP_024389892.1	5.500e-7	24.46	uncharacterized protein LOC112289162 isoform X1 [P...	[more]
XP_024389896.1	5.500e-7	24.46	uncharacterized protein LOC112289162 isoform X3 [P...	[more]
XP_024372633.1	9.400e-7	25.00	uncharacterized protein LOC112280916 [Physcomitrel...	[more]

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL050	nonsL050	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL049	nonsL049	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR037	ncniR037	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR045	ngnoR045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005981	NSK005981	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO26G00890.1	NO26G00890.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|176221	gene_7910	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO26G00890.1	NO26G00890.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO26G00890 ID=NO26G00890|Name=NO26G00890|organism=Nannochloropsis oceanica|type=gene|length=2580bp
ATGGGGCCTGCTGGGCGACGAGCGCCCGCCTCCTCTCCGATGCTTCTTCT
TGCCTTACCACTTTTCCTTCTGCTCCTCACCCACGTCACGACCTCGACCC
ACGCATTTGAGCTTTCCTGCGCTCACGCGAGAATACCTGTACCCGAGGCC
TTGACATTCTGCGGGGATATTGTCACATGGCGGGCCGCCATTGTGTATTC
CCATGTTAATCACACCGATTTTCACCCAGGGATTAAATTCACGGATGCGG
ACCAAGACCGCATTGCGCGACTGCAGTACGAAGACTTAATGCTTGCAGCA
GCAGGTGTGGCAGATGAAAGAGATACCACAAGAGTAGGCATAGATGGTTG
CAATGAGAAAGAGAGGAGTTGCTCGGACATCGTGGACGTGAAGGGTGGAG
AGGTGGAGGGCCAAAGAACACAGGAGCTGGAACAGGCGTGCTTGTCTTCG
CCATCATCCTCCTTGCCCACTGCTGCAACAACACACGGCAGTGAAGGAAA
GTGTGGCTATGCTCTGAAACGCTTTGTCTGTGCAAGCGTCTTCTCTGAAT
GTCCCCACGAGGGAATACGCATGCCCCATGTCCCTGTCTGCCGCCCCGTG
TGCCGCGACGCCGAAGCCCAATGCCTCCTCCCTCTCTCCTGCGAATCCTT
TCGATCCACCGACTGTACTGCCGCGCTTGAGGAGGGATTTTTTCTCCTTA
AAGATGACCAAGGCCCTCATGAACCCCTTCCCTACCTTTACGTCTCCCTA
CTCCTCATATGGACGGGTCTTTCCTTTATCTGGCTCCACCACACCTGCAG
GCGAAGCAACCTCCATCCACACCGCCATGGCCGGGGCTCGGGCCCCTCCT
CCCTGGCTGCCTCACAACTCTGCCGCGTCCTCAGTTGTGTGCCGATCACC
AAGGTATCAATGATGTTGTTGTCATTGACCTTCTGGTCTACGTGTGTGAC
ATGGGGCTACTGCTCCTTCTGGCTTGGCATCTCCTTGATCAACTGCCAGC
TGCTCTACGAGACCTTCGCCCTCGCCGGTCTTGCTTTGGTGGCGAAAGGA
TGGTGCATTACTCGCTCCTCTTTCCAGCCCCACGAATGGCGCACTCTCAT
ACTGTTAATTTGTGCCTTCTACCTCGCCTCCTCCTCCCTCCTCCTTGTAC
GGCGGCTGCTCCTCTCCCCCCTTATCTTCTGGCTATGCACTGCCCTCCTC
TACGGCTCAGCATATTCCTACGTCATTTACAATGTCTATCAACGCCTTTC
GTACCTGCATCACCAAATCACCTTCGCTGCCGCCGCTGCTGCTCCTCCCC
CCCTCCCTCCCTCCCTCCAGCATCGCCGGCAGCGGCATCAGCATCGGCTA
CAGCGGCAACAGCACCGACGACGACTCGAAATTTTGGAGCTCAAGCACTG
GATGTACCAAACCCTGGCTAACCTTTTCACCCTCTTTGGTGCTATCGAGT
GTTTTTTCTGCTGCCTTCCACTCTTGCCGTCTCTCAGTGCAGGCCTGCCC
CCCCTCCCTTCCTTCCTTTACTCTGTCCTGGATGTCCTTGAGGAGCTTGA
TGCGAAATTATGGCTCACATTAGTAGTGCATGAGGCAGTAGAAATAGTGA
CATTGTTTATGATTGGGTTTCTGTTTCGTCCTCGCTTGGTGTCGGCGTTC
TGGTACCTTGACAGGGATGAGAGGAGGGTTGGCCTGGAGGGGGAGGGAGG
GAGGAAGGGAAGAGGAAGGACGGAAGGGAGGCCTCTGTATTTGATTCCGG
TGGGTACGAGGGAGTACGAGAGAGAGAGGGAGGGAGATGTGACAGACAAA
GGCTGCTCTTTGCTACATTCCCCCCTTCTTTCTATTGCTGCTGATGCTAC
TGCTGCTGCTGCTGCTGCTGCTCCAGGAGTAACGTACCACCCTCACCTCA
TTCCCCGTCAGCATTTGGCGGCTCAAGACTTTCAATTTATCGTTTCGTCT
GACAGTCTTCGCTCGGTTCATCCAAGACCGCGGCAGCAGCGGCAACAGCA
GCAACAGCAGCAACAGCAGCAACGGGAGCAGGGGCAGCAGCATCAACAAC
TTCAACAGCAAAGAGAAAGGACTCTCTCTTCTTCCTCTTCCTCCACCTCC
TCCCTCTCTCTCTCTCTCTCTTCCTCTCTTTCCTCCTTCTCCTCCTCCGC
CTCTGTGAACACAAACATCATAACAGCAGCCACGGGGGCGGGTCAAGTAT
CAAGAGAGGAAGAGCAACGGCAGCATCAAGGAGAGCAAGGGAGGGAGGAT
GACGTACCAGCATCAGCATCAACATTAATAGTATCAACAGCAGAAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGGATCAGCAGCAG
GATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCTTGACCATGTCT
GAGGATCCGGCGGTGGCTCCTGTGAAGGCGGCGATAAGATACCACTCTTC
CAGATTTCTCGTAGTGCGACAGCCTGGCCATCAAATTCACGTTGCCGTCA
GGGAAGAGGAGGAAAAGGAGGAGGAACTGCAGCAGGAGGAGGAACGGGAG
GAGGGGGGAGTGGGTGGGGAGGTGGGGTAA

protein sequence of NO26G00890.1

>NO26G00890.1-protein ID=NO26G00890.1-protein|Name=NO26G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=860bp
MGPAGRRAPASSPMLLLALPLFLLLLTHVTTSTHAFELSCAHARIPVPEA
LTFCGDIVTWRAAIVYSHVNHTDFHPGIKFTDADQDRIARLQYEDLMLAA
AGVADERDTTRVGIDGCNEKERSCSDIVDVKGGEVEGQRTQELEQACLSS
PSSSLPTAATTHGSEGKCGYALKRFVCASVFSECPHEGIRMPHVPVCRPV
CRDAEAQCLLPLSCESFRSTDCTAALEEGFFLLKDDQGPHEPLPYLYVSL
LLIWTGLSFIWLHHTCRRSNLHPHRHGRGSGPSSLAASQLCRVLSCVPIT
KVSMMLLSLTFWSTCVTWGYCSFWLGISLINCQLLYETFALAGLALVAKG
WCITRSSFQPHEWRTLILLICAFYLASSSLLLVRRLLLSPLIFWLCTALL
YGSAYSYVIYNVYQRLSYLHHQITFAAAAAAPPPLPPSLQHRRQRHQHRL
QRQQHRRRLEILELKHWMYQTLANLFTLFGAIECFFCCLPLLPSLSAGLP
PLPSFLYSVLDVLEELDAKLWLTLVVHEAVEIVTLFMIGFLFRPRLVSAF
WYLDRDERRVGLEGEGGRKGRGRTEGRPLYLIPVGTREYEREREGDVTDK
GCSLLHSPLLSIAADATAAAAAAAPGVTYHPHLIPRQHLAAQDFQFIVSS
DSLRSVHPRPRQQRQQQQQQQQQQREQGQQHQQLQQQRERTLSSSSSSTS
SLSLSLSSSLSSFSSSASVNTNIITAATGAGQVSREEEQRQHQGEQGRED
DVPASASTLIVSTAEAAAAAAAAAAAAEAGSAAGSAAAAAAAAAAALTMS
EDPAVAPVKAAIRYHSSRFLVVRQPGHQIHVAVREEEEKEEELQQEEERE
EGGVGGEVG*

Synonyms

Publications