NO26G00760, NO26G00760 (gene) Nannochloropsis oceanica

Overview
NameNO26G00760
Unique NameNO26G00760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr26:258786..260240 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:258786..260240 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO26G00760 vs. NCBI_GenBank
Match: EWM23112.1 (hypothetical protein Naga_100316g3 [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 5.200e-95
Identity = 192/387 (49.61%), Postives = 256/387 (66.15%), Query Frame = 0 
Query:    1 MLEIYLSLLRNGASVIKDFLPSGHALLIPPATIAPAVLPFLPHSHLAGIPVIDLFIAPLQLVAVLYGGIGGLSDLVDALQRWRRSKAWARGAMNMESHMYEREVLDMRERLQAEVEEAWGSITWAVLKITFGVCFWFFFLSSLKNVEEEAIQWTLLAMEVAALICLYKGGLSLLTRRAKALYLLGITPNDLLE-MDQIDG--------KLVEFADKRLGFTWEDQVSYHPNALFADIEHLSRAYARLALMLQKATEEHDEDAQADLKEMLHRIHTHGRQQLSLCWVDAGIFLMDAIAFLAYVFFPLVWFYPDEALYHSLLTGPYLKYPGHDVVLTTGAIIGDVMWTLQPACMLASTVIRKVVEEKVVGPEPSHVLRLPPLKRKGKAK 379
            MLEIYLSL+RN ASV+K  LPS H L  P   +A      L H  ++  P+IDL IAPLQLVA + GGIGG+ DL+ ALQ+WRR+KAW+ G  +MES  Y RE+ DMR R + EVE+A   +T A  +I FG+ F+ FFLS+L+  +E  IQWTL  MEVAAL CL +G  S+L RR +AL+LL + P DLL  + Q++         +L++FA+ RL FTW++   YHP AL +D+EHL  AY R   +L +     D DA+ D++EMLHR+    R  LSLC +DA + L +A+AFL Y+FFPLVW +PDEA YH   +G  L YPGH  +L  GA IGDVMWTL+PAC+LA+++IR+ VE +++ PEP    R   + R  + K
Sbjct:    1 MLEIYLSLVRNAASVVKSTLPSTHILRSPLCNLAST--ESLLHLQISMYPLIDLIIAPLQLVAGVSGGIGGVFDLILALQQWRRTKAWSTGTQHMESRTYGRELRDMRARAEKEVEKARDRVTDACFRIIFGLFFYVFFLSTLQKADERMIQWTLFLMEVAALACLVRGAQSVLARRERALHLLSLNPADLLSALSQLENGSTAFLPHELMDFAENRLVFTWDNPQPYHPYALLSDLEHLHSAYTRFHGVLSRFKTGKDSDAEVDVREMLHRMQRQARALLSLCAMDALVLLFNAVAFLGYLFFPLVWLFPDEAWYHRAFSGRLLIYPGHAFILDRGAFIGDVMWTLEPACLLAASLIRRTVETRLMPPEPEFNTRTSDVNRYARPK 385
The following BLAST results are available for this feature:
BLAST of NO26G00760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23112.15.200e-9549.61hypothetical protein Naga_100316g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005999NSK005999Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00760.1NO26G00760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|175038gene_7896Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100316g3gene7334Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00760.1NO26G00760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00760 ID=NO26G00760|Name=NO26G00760|organism=Nannochloropsis oceanica|type=gene|length=1455bp
ATGCTGGAAATCTACCTCTCCCTCCTCCGCAACGGCGCCAGCGTTATCAA
GGATTTCCTTCCCTCTGGCCACGCCTTGCTGATCCCACCTGCCACCATCG
CCCCGGCCGTCCTCCCTTTCCTCCCCCACTCCCACCTGGCTGGCATCCCA
GTCATCGACCTCTTTATTGCTCCTCTCCAACTCGTCGCGGTCTTGTACGG
TGGGATCGGCGGTCTTTCCGACTTGGTTGATGCCTTGCAAAGATGGCGGC
GCTCCAAGGCGTGGGCGAGGGGCGCGATGAATATGGAGAGTCATATGTAT
GAAAGAGAGGTGCTGGACATGCGTGAACGGCTGCAAGCCGAGGTCGAGGA
GGCCTGGGGAAGCATAACCTGGGCTGTGCTCAAGATCACGTTTGGCGTGT
GCTTTTGGTTCTTCTTTTTGAGCAGTCTGAAAAATGTGGAAGAGGAGGCA
ATCCAATGGACCTTGTTGGCGATGGAGGTGGCGGCGTTGATATGCCTGTA
CAAAGGAGGGCTTAGCCTCCTGACCCGTCGTGCGAAAGCACTGTATCTTC
TCGGTATTACACCTAATGACCTGCTCGAGATGGACCAAATCGACGGAAAA
CTGGTTGAATTCGCGGATAAACGCCTCGGATTCACCTGGGAAGATCAAGT
GAGCTACCATCCCAATGCCTTGTTCGCCGACATTGAGCATCTCTCTCGGG
CTTATGCCCGACTGGCGTTAATGCTCCAAAAGGCCACCGAGGAACATGAC
GAAGACGCCCAGGCAGATCTCAAGGAGATGTTACACCGTATCCATACACA
TGGCCGACAGCAGCTGTCCTTGTGCTGGGTGGATGCTGGCATCTTCCTCA
TGGATGCTATTGCCTTCTTGGCCTATGTCTTCTTCCCACTCGTCTGGTTC
TACCCTGACGAAGCCCTGTACCACAGTCTTCTTACCGGCCCATATTTAAA
ATATCCAGGCCATGACGTTGTCTTGACCACGGGGGCGATCATTGGGGATG
TGATGTGGACGTTGCAACCTGCCTGCATGCTCGCCTCCACGGTCATTCGG
AAGGTGGTCGAGGAGAAGGTTGTCGGGCCGGAACCTTCGCATGTCTTGCG
GTTGCCACCACTTAAGAGGAAGGGGAAGGCAAAGGCGTTGGGGGCGACCA
CAACGACGGCGAGGGAGCGATCACCAGTCGCAGGAACGGCGGTCGTGGCG
TCGGCAAGGAGGAGGAGGGGGGCTGTTGAGAAGGATGAGGATGAGGAGGA
GGAGGAGGAGAAGTTTGGGAGGAAGGAAGGGAGAAATGGTAGGGGGTCGA
CGCAAGGAAAAGTGGCTGCAAGGCGACGAACAGGCATGGCAGGCAAGAAG
GGCAACAGCAGCAGTAGCAGCGTCGAGCAGACGGTGGGCCCGTCCGTCGT
TACACGCGCGAGTTCTCGGTTGCGCATGCAGGGGAAAGGAGGCAAGACCA
ACTAA
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protein sequence of NO26G00760.1

>NO26G00760.1-protein ID=NO26G00760.1-protein|Name=NO26G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MLEIYLSLLRNGASVIKDFLPSGHALLIPPATIAPAVLPFLPHSHLAGIP
VIDLFIAPLQLVAVLYGGIGGLSDLVDALQRWRRSKAWARGAMNMESHMY
EREVLDMRERLQAEVEEAWGSITWAVLKITFGVCFWFFFLSSLKNVEEEA
IQWTLLAMEVAALICLYKGGLSLLTRRAKALYLLGITPNDLLEMDQIDGK
LVEFADKRLGFTWEDQVSYHPNALFADIEHLSRAYARLALMLQKATEEHD
EDAQADLKEMLHRIHTHGRQQLSLCWVDAGIFLMDAIAFLAYVFFPLVWF
YPDEALYHSLLTGPYLKYPGHDVVLTTGAIIGDVMWTLQPACMLASTVIR
KVVEEKVVGPEPSHVLRLPPLKRKGKAKALGATTTTARERSPVAGTAVVA
SARRRRGAVEKDEDEEEEEEKFGRKEGRNGRGSTQGKVAARRRTGMAGKK
GNSSSSSVEQTVGPSVVTRASSRLRMQGKGGKTN*
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Synonyms
Publications