NO26G00740, NO26G00740 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO26G00740
Unique Name	NO26G00740
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2276
Alignment location	chr26:254904..257179 -

Link to JBrowse

Properties


Property Name	Value
Description	SPla/RYanodine receptor (SPRY) domain-containing protein

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr26	genome	chr26:254904..257179 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013320	ConA-like_dom
IPR001870	B30.2/SPRY
IPR003877	SPRY_dom

Homology

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: XP_002179135.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48958.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 135.6 bits (340), Expect = 4.500e-28
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFG-EEPFVFDLGKYMEGGR 514
            VAVG+A+ AF L   MPGWD  SY +H DDGGIFH +G  V+ YG  YG GDVVGCG+DY    +F+TLNG YLG AF L  +    D   YP VG+D++  VQ NFG  EPF+FDL + +E  R
Sbjct:  426 VAVGIANAAFTLHARMPGWDPHSYGYHGDDGGIFHASGHMVKTYGPTYGVGDVVGCGIDYVHGVVFYTLNGRYLGQAFVLSPDDLHRD--WYPVVGMDTNCLVQCNFGVHEPFLFDLQRKIESQR 548

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: GAX17992.1 (hypothetical protein FisN_18Hh205 [Fistulifera solaris])

HSP 1 Score: 131.3 bits (329), Expect = 8.500e-27
Identity = 63/120 (52.50%), Postives = 78/120 (65.00%), Query Frame = 0

Query:  391 AVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFGEEPFVFDLGKYME 511
            AVGLA+  F L   MPGWD+ SY +H DDGGIFH TG  +R YG  +G GDV+GCG+DY  + IF+T NG +LG AF    +   E    YP VGIDS   ++ NFG+ PF+FDL   ME
Sbjct:  332 AVGLANEYFALHSRMPGWDSCSYGYHGDDGGIFHKTGHMLREYGPTFGAGDVIGCGIDYHKRAIFYTHNGKFLGYAFTSLTDHELEK-DWYPVVGIDSKSFIKCNFGQTPFLFDLEAMME 450

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: GAX17555.1 (hypothetical protein FisN_18Lh205 [Fistulifera solaris])

HSP 1 Score: 128.6 bits (322), Expect = 5.500e-26
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 0

Query:  391 AVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFGEEPFVFDLGKYME 511
            AVGLA+  F L   MPGWD+ S+ +H DDGGIFH TG  +R YG  +G GDV+GCG+DY  + IF+T NG +LG AF    +   E    YP VGIDS   ++ NFG+ PF+FDL   ME
Sbjct:  336 AVGLANEYFALHSRMPGWDSCSFGYHGDDGGIFHKTGHMLREYGPTFGAGDVIGCGVDYHKRAIFYTHNGKFLGYAFTSLTDHELEK-DWYPVVGIDSKSFIKCNFGQTPFLFDLEIMME 454

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: CBJ29317.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 127.5 bits (319), Expect = 1.200e-25
Identity = 67/131 (51.15%), Postives = 83/131 (63.36%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYK----TKEIFFTLNGVYL-GVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFGEEPFVFDLGKYM-EGGRE 515
            +AVG++   FPL+G MPGWD+ SY +HSDDGG FH  G  +   G  +G GDVVGCGLDY       +IFFTLNG  L G +    G  G      YPTVG+DS+ PV++N GEEPF  DL   + EGG+E
Sbjct:  502 IAVGVSESRFPLKGKMPGWDSRSYGYHSDDGGAFHDAGSMLFKCGPSFGAGDVVGCGLDYSVGGDAADIFFTLNGELLNGGSAAFRGVRG----TFYPTVGVDSACPVRINLGEEPFRLDLAAALREGGQE 628

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: OEU22198.1 (SPRY-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 125.6 bits (314), Expect = 4.700e-25
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFG--EEPFVFDLGKYM 510
            VAVGLA+ +F +   MPGWD  S+ +H DDGGIFH +G  ++ YG  +G  D VGCG+DY +K IF+TLNG +LG AFK + +       LYP VG+D++ P+ +NFG   E F FDL  ++
Sbjct:  483 VAVGLATESFRVHSRMPGWDRQSFGYHGDDGGIFHSSGGMLKSYGPKFGSRDTVGCGIDYISKGIFYTLNGKFLGYAFK-DIDNSVLQTDLYPVVGLDTNCPIHVNFGTDNEAFQFDLSNFI 603

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: EJK62724.1 (hypothetical protein THAOC_16653 [Thalassiosira oceanica])

HSP 1 Score: 124.4 bits (311), Expect = 1.000e-24
Identity = 60/114 (52.63%), Postives = 73/114 (64.04%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFGEEPFVF 504
            VAVGL++  F  +  MPGWD  SY +H DDGGIFHG G   + YG  +GPGD VGCGLDY ++ IFF  NG +LG AF    E       LYPTVG+DS  P+ +N+G  PF F
Sbjct:  590 VAVGLSTAQFRDQSNMPGWDGNSYGYHGDDGGIFHGLGENKKSYGPKFGPGDNVGCGLDYASRRIFFCKNGEFLGHAFDRVDE-RMIKAGLYPTVGLDSECPIFVNYGFRPFKF 702

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: GAX17991.1 (hypothetical protein FisN_18Hh204 [Fistulifera solaris])

HSP 1 Score: 114.8 bits (286), Expect = 8.200e-22
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAF-KLEGEGGREDVPLYPTVGIDSSHPVQLNFG-EEPFVFDL 506
            + +G+ +  F     M GWD  S+ +HSDDGG++H  G  +R +G  +G GD VGCG+DY+ + IFFTLNG +LG AF +L  +   +D  LYP VG+D+  PV  NFG +E F+FDL
Sbjct:  319 IVIGVGTRKFHFSNRMAGWDDQSFGYHSDDGGVYHNQGQMIRKFGPTFGVGDTVGCGVDYQRRAIFFTLNGNFLGYAFERLSLKILEQD--LYPVVGLDTHCPVACNFGCDEGFLFDL 434

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: GAX17554.1 (hypothetical protein FisN_18Lh204 [Fistulifera solaris])

HSP 1 Score: 114.0 bits (284), Expect = 1.400e-21
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAF-KLEGEGGREDVPLYPTVGIDSSHPVQLNFG-EEPFVFDL 506
            + +G+ +  F     M GWD  S+ +HSDDGG++H  G  +R +G  +G  D VGCG+DY+ + IFFTLNG +LG AF KL  +   +D  LYP VG+D+  PV  NFG EE F+FDL
Sbjct:  321 IVIGVGTRKFHFSNRMAGWDDQSFGYHSDDGGVYHNQGQMIRKFGPTFGVRDTVGCGVDYQRRAIFFTLNGNFLGYAFEKLSLKILEQD--LYPVVGLDTHCPVACNFGCEEGFLFDL 436

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: CEG84689.1 (hypothetical protein RMATCC62417_18455 [Rhizopus microsporus])

HSP 1 Score: 109.8 bits (273), Expect = 2.600e-20
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDV--PLYPTVGIDS-SHPVQLNFGEEPFVFDLGKYME 511
            + +G       LE  +PGWDA SYA+H+DDG IF   G + + YG  +  GDVVGCG+DY  +  FFT NG++LGVAFK      + D+  P+YP VG+ +    V +NFG+EPFVFD+ +Y++
Sbjct:  134 ICIGFCRAGNKLE-RLPGWDAHSYAYHADDGHIFDQCG-RGKSYGPTFTTGDVVGCGIDYANQTAFFTKNGLFLGVAFK------QVDLSEPIYPCVGLRTPGEKVSVNFGQEPFVFDIVQYVK 249

[Close]

BLAST of NO26G00740 vs. NCBI_GenBank
Match: CEI96707.1 (hypothetical protein RMCBS344292_10864 [Rhizopus microsporus])

HSP 1 Score: 109.8 bits (273), Expect = 2.600e-20
Identity = 57/124 (45.97%), Postives = 80/124 (64.52%), Query Frame = 0

Query:  390 VAVGLASGAFPLEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYKTKEIFFTLNGVYLGVAFKLEGEGGREDV--PLYPTVGIDS-SHPVQLNFGEEPFVFDLGKYME 511
            + +G       LE  +PGWDA SYA+H+DDG IF   G + + YG  +  GDVVGCG+DY  +  FFT NG++LGVAFK      + D+  P+YP VG+ +    V +NFG+EPFVFD+ +Y++
Sbjct:   98 ICIGFCRAGNKLE-RLPGWDAHSYAYHADDGHIFDQCG-RGKNYGPTFTTGDVVGCGIDYANQTAFFTKNGLFLGVAFK------QVDLSEPIYPCVGLRTPGEKVSVNFGQEPFVFDIVQYVK 213

The following BLAST results are available for this feature:

BLAST of NO26G00740 vs. NCBI_GenBank

BLAST of NO26G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_002179135.1	4.500e-28	54.40	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
GAX17992.1	8.500e-27	52.50	hypothetical protein FisN_18Hh205 [Fistulifera sol...	[more]
GAX17555.1	5.500e-26	51.67	hypothetical protein FisN_18Lh205 [Fistulifera sol...	[more]
CBJ29317.1	1.200e-25	51.15	conserved unknown protein [Ectocarpus siliculosus]	[more]
OEU22198.1	4.700e-25	48.36	SPRY-domain-containing protein [Fragilariopsis cyl...	[more]
EJK62724.1	1.000e-24	52.63	hypothetical protein THAOC_16653 [Thalassiosira oc...	[more]
GAX17991.1	8.200e-22	46.61	hypothetical protein FisN_18Hh204 [Fistulifera sol...	[more]
GAX17554.1	1.400e-21	47.46	hypothetical protein FisN_18Lh204 [Fistulifera sol...	[more]
CEG84689.1	2.600e-20	45.97	hypothetical protein RMATCC62417_18455 [Rhizopus m...	[more]
CEI96707.1	2.600e-20	45.97	hypothetical protein RMCBS344292_10864 [Rhizopus m...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL050	nonsL050	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
nonsL049	nonsL049	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR037	ncniR037	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR045	ngnoR045	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK006003	NSK006003	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO26G00740.1	NO26G00740.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600428	gene_7894	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO26G00740.1	NO26G00740.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO26G00740 ID=NO26G00740|Name=NO26G00740|organism=Nannochloropsis oceanica|type=gene|length=2276bp
ATGGAGAAGAAGCGTGAGGAGGAGAAGGGGCGGAGGGAGGGTGGAAGGGA
GGAGGGGGAGGAGGAAGGGACGGTCTGGGATCGGTTGTCGAGGTTGAGAA
GGCAGTTTCACCTGCCGGTACCTCCCTCTCTCCCTCCCTTTCCTCCTTTT
CCTCACTTACCACCGTCGTTTGCAGCGGCGGCGGCGGCGGCGGCGGCAGC
GATGGCCGCAGCAGCTGGAGTGGAAGGAGGGGGGGAGGGTGGAGACAGGG
AGGGAGGGAGGGGCGGAGGGTATCAGAGTCCATATTCCTATTTTTTGTCG
TCGTCGGCACCGGCGTCGTTTTCGGCCTTCATGTCGAGACACCAGCAGCG
ACAGCAGCATGAGGAGGAGGACGAGGAAGAGGAAGAGGGCGAAGACGGGG
AAGAGGAGGAGCAGCATCAGCACCAGCACCAGCACCAGCAAGAGGTTGGC
CTATTCGCCCTTCACTCCCTTCAGCAGCTGCAGCAGTACCAGCAGCAGCA
CCAGCAGCTGCTGCAGGCAAATGCCTCATCCTCTCTTCCCAGCTCCCCCT
CAAAAGAGGCTGTCGTCCTCCCTCGTTCCGTCCCGTCCTCTTGTTTCCCC
CCCCCTGGCCCTCATCCCTTTTCAGCGGCTTGGGTCAGGGCAAGGGAGGG
AGGGAAGGAGGAAGGGATTGTGTATGACGTCGCCCCCCGTTTGGTGGGAT
ATTATGAAGTGACGATCGTGCCAAGGGAGGAGGAGGAGGAGGAAAGCGGG
AGGGAGGTAGGGATGCAGGGGCTGGCCCCGCCGCAGCCGGCCTTGCCTGT
CACTTTTGTCCCCCAGCCGCCCCTTGAGAATGCTGTGGTAGCGGAGGAGG
GGGGGGGGGAGGAGGAGGAGGGAGAGGAAGATTTCTTCCTGATGGATGTA
GAGGAGGACGACCAGGAGGACGAGGAAAACGATGCGGATGACGTTGCCAT
TTTGGCAGCAGCTGCTCATCATCAATTACATCAACATCACGCCGATCAAC
CCCCCGTCCTCCCTCCCGCCCTCAACCACCACCACCACCACCACCACCAC
CACCAGCATCACAATCACAATGTTCACAACCACAACAACAACAACGACAA
CAACAACAACAACAACAACAACAACAACAACAACAACGACAACAACAACA
GCAACAACAATAATTGTGTGGCAGTCGGACTGGCCAGCGGGGCCTTTCCT
TTGGAGGGATACATGCCGGGGTGGGATGCGGCATCATACGCGTTCCATTC
AGACGACGGAGGGATCTTCCACGGCACTGGCATCAAGgtgacctttccct
ccatccctcccacccccactccctccttcccttgtgtctgctggtctcca
tccccacagccattctgtggacccccgggagcccgtcatagggacaccca
catcggactttccattcattcactcccttccaacaaaccctacaacctct
gactccctccctccctccctccctccttcccttcccctctccctccctcc
ttccttcctaatctcagGTGCGTTATTACGGATCTCCGTATGGACCCGGC
GATGTTGTGGGATGCGGGCTGGACTATAAAACGAAGGAAATATTCTTCAC
ATTAAACGGGGTTTACCTAGGCGTGGCTTTCAAGCTAGAGGGGGAGGGAG
GGAGAGAAGACGTGCCGCTGTATCCGACGGTGGGGATCGACAGCTCGCAC
CCGGTTCAGTTGAATTTCGGGGAGGAGCCGTTCGTGTTTGATTTGGGGAA
GTATATGGAGGGAGGGAGGGAAGAAGGGAGGGAGGGAGGGGTGGTGTAGG
GTGGAGGTGGAAAGAGAGGATGACAGGAGATGGGAGCTATATCAGAACCA
TGCATTTCCATTCCAATCGTGGTCGTGTTGGTGTTTTAATTGGGGTCATT
CGAAACAGGCAAGCATGATTAATAACCCACAGGGGAGGGGGGATGAATAG
AATTTAGTGTCCAGCGACAGGAAAGGAAGGGAATGAGACGCTCAAAGAGG
GTCTTTCACAGCCAGTCGTGCCACGTGAAAAAGTGAGAAAAAAGAGACGA
GGAAGGGAGGTGCCCATCAGGGTGAGGAAGAGAGGCCATGGGGGTACGCC
GGCATCGACGGGAGAGACACATACGGATAAACGCATGCAAACACAGGCGG
AACGATTCCCCAACAAACGGTGCGAGCAGAGGAAAGTGATATGAGATAGA
TGCCCAAGACAATGAGAATTAATCCGAATCAGAGAGGATCGAGATGAGGC
ATTAGATGTACTAAAACAAGACCTGT

protein sequence of NO26G00740.1

>NO26G00740.1-protein ID=NO26G00740.1-protein|Name=NO26G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MEKKREEEKGRREGGREEGEEEGTVWDRLSRLRRQFHLPVPPSLPPFPPF
PHLPPSFAAAAAAAAAAMAAAAGVEGGGEGGDREGGRGGGYQSPYSYFLS
SSAPASFSAFMSRHQQRQQHEEEDEEEEEGEDGEEEEQHQHQHQHQQEVG
LFALHSLQQLQQYQQQHQQLLQANASSSLPSSPSKEAVVLPRSVPSSCFP
PPGPHPFSAAWVRAREGGKEEGIVYDVAPRLVGYYEVTIVPREEEEEESG
REVGMQGLAPPQPALPVTFVPQPPLENAVVAEEGGGEEEEGEEDFFLMDV
EEDDQEDEENDADDVAILAAAAHHQLHQHHADQPPVLPPALNHHHHHHHH
HQHHNHNVHNHNNNNDNNNNNNNNNNNNNDNNNSNNNNCVAVGLASGAFP
LEGYMPGWDAASYAFHSDDGGIFHGTGIKVRYYGSPYGPGDVVGCGLDYK
TKEIFFTLNGVYLGVAFKLEGEGGREDVPLYPTVGIDSSHPVQLNFGEEP
FVFDLGKYMEGGREEGREGGVV*

Synonyms

Publications