NO26G00610, NO26G00610 (gene) Nannochloropsis oceanica

Overview
NameNO26G00610
Unique NameNO26G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length501
Alignment locationchr26:216591..217091 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:216591..217091 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008506DUF788_TMEM208
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO26G00610 vs. NCBI_GenBank
Match: EWM23092.1 (uncharacterized protein Naga_100536g4 [Nannochloropsis gaditana])

HSP 1 Score: 176.8 bits (447), Expect = 5.600e-41
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0 
Query:    1 MAGQARKKAQKAANITGSFYWKVIIVVNLLYVACLAYHIKNNTKFWVEMQQWSVKKKIAFPFLTFCCYALAYHGLVSAAVERLSASTYVDLLGLTMAAQFTSFVTHWFWVLFLVLPVAGVYLYVLPLFGMLK 133
            MAGQARKKAQKAA+ TG+FYWKVI+ VNLLY  CL YHI+ +T  W  +Q W+  +K+ F  LT  CY L Y GLVSAA  R+SAS YVDLLG+T AAQF+SFVT +FWVL+LVLPVAGVYLYV PL GML+
Sbjct:    1 MAGQARKKAQKAASTTGAFYWKVILGVNLLYALCLIYHIRQDTPSWHALQAWTWVQKVLFVSLTLLCYTLGYQGLVSAAASRMSASAYVDLLGITAAAQFSSFVTRYFWVLYLVLPVAGVYLYVWPLLGMLR 132
The following BLAST results are available for this feature:
BLAST of NO26G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23092.15.600e-4167.42uncharacterized protein Naga_100536g4 [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL048nonsL048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR044ngnoR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006030NSK006030Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00610.1NO26G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641478gene_7882Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100536g4gene7360Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00610.1NO26G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00610 ID=NO26G00610|Name=NO26G00610|organism=Nannochloropsis oceanica|type=gene|length=501bp
ATGGCGGGCCAAGCACGAAAAAAGGCGCAAAAAGCAGCCAACATCACAGG
CTCCTTCTACTGGAAAGTCATCATAGTCGTGAACCTCCTCTATGTCGCCT
GCCTCGCCTACCACATCAAGAATAACACCAAATTCTGGGTCGAAATGCAA
CAGTGGAGTGTCAAGAAAAAAATTGCCTTCCCCTTCCTCACATTCTGTTG
CTACGCCCTTGCGTATCACGGACTCGTTTCGGCCGCGGTAGAGCGCTTGT
CGGCGAGTACGTACGTGGATTTATTGGGTTTAACAATGGCCGCGCAATTT
ACGAGTTTTGTGACTCATTGGTTTTGGGTCTTGTTTTTGGTTTTGCCCGT
GGCAGGGGTATACTTATATGTGCTACCGTTGTTTGGGATGTTGAAGGGTT
TGATGGGAGGAGGAGGGGGGAGGGAGGGACGGGAGGGGAGGACGAGAAGA
AGGAGAAGAAGAAAAGGAAATAAAGAAGAACATGAGGAAACGAGTGCGTA
A
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protein sequence of NO26G00610.1

>NO26G00610.1-protein ID=NO26G00610.1-protein|Name=NO26G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MAGQARKKAQKAANITGSFYWKVIIVVNLLYVACLAYHIKNNTKFWVEMQ
QWSVKKKIAFPFLTFCCYALAYHGLVSAAVERLSASTYVDLLGLTMAAQF
TSFVTHWFWVLFLVLPVAGVYLYVLPLFGMLKGLMGGGGGREGREGRTRR
RRRRKGNKEEHEETSA*
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Synonyms
Publications