NO26G00600, NO26G00600 (gene) Nannochloropsis oceanica

Overview
NameNO26G00600
Unique NameNO26G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length726
Alignment locationchr26:215139..215864 +

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription elongation factor B, polypeptide 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:215139..215864 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0009056catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011333BTB/POZ_fold
IPR016073Skp1_comp_POZ
IPR001232SKP1-like
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Homology
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: XP_005855940.1 (transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526] >EKU20413.1 transcription elongation factor B, polypeptide 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.0 bits (463), Expect = 4.700e-43
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0 
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            ME++ SKY+KLISAEGHEFIVDRKCACVSKTIEAMLAG F ESKGEI FPEISTNILEKVIQYLYYKVRYTNS  KVPDFK+EPE+ALELLMAANFLDC
Sbjct:    1 MEDDASKYVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAESKGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: XP_008618991.1 (transcription elongation factor B, polypeptide 1 [Saprolegnia diclina VS20] >XP_012205861.1 hypothetical protein SPRG_11463 [Saprolegnia parasitica CBS 223.65] >EQC27571.1 transcription elongation factor B, polypeptide 1 [Saprolegnia diclina VS20] >KDO23371.1 hypothetical protein SPRG_11463 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 153.3 bits (386), Expect = 4.000e-34
Identity = 70/95 (73.68%), Postives = 85/95 (89.47%), Query Frame = 0 
Query:    5 PSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            PS+Y+KLISAEGHEF V RKCA VS TI+AML+G F+ESKGE++FP+I   ILEKVIQY+YYK RY+NSN+++PDF +EPEMALELLMAAN+LDC
Sbjct:    9 PSEYVKLISAEGHEFYVARKCALVSGTIKAMLSGHFSESKGEVRFPDIGAPILEKVIQYMYYKKRYSNSNARIPDFAIEPEMALELLMAANYLDC 103
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: OQR94293.1 (transcription elongation factor B polypeptide 1 [Achlya hypogyna])

HSP 1 Score: 152.1 bits (383), Expect = 8.900e-34
Identity = 70/94 (74.47%), Postives = 85/94 (90.43%), Query Frame = 0 
Query:    6 SKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            S+Y+KLISAEGHEF V RKCA VS TI+AML+G F+ESKGE++FP+IS  ILEKVIQY+YYK RY+NSN+++PDF +EPEMALELLMAAN+LDC
Sbjct:    8 SEYVKLISAEGHEFFVARKCALVSGTIKAMLSGHFSESKGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: OQS06752.1 (transcription elongation factor B polypeptide 1 [Thraustotheca clavata])

HSP 1 Score: 149.1 bits (375), Expect = 7.500e-33
Identity = 69/99 (69.70%), Postives = 86/99 (86.87%), Query Frame = 0 
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            M +  S+Y+KL+SAEGHEF V RKCA VS TI+AML G F+ESKGEI+FP+IS  ILEKVIQYLYYK RY+NSN+++P+F +EPEM+LELLMAAN+L+C
Sbjct:    7 MADTESEYVKLVSAEGHEFYVARKCALVSGTIKAMLLGQFSESKGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: XP_009837007.1 (hypothetical protein H257_11701 [Aphanomyces astaci] >ETV73581.1 hypothetical protein H257_11701 [Aphanomyces astaci])

HSP 1 Score: 144.1 bits (362), Expect = 2.400e-31
Identity = 67/93 (72.04%), Postives = 81/93 (87.10%), Query Frame = 0 
Query:    7 KYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +YIKLISAEGHEF + RKCA VS TI+AML G F ESKGEI+F +I  +ILEKVIQY+YYK RY+NSN+++PDF +EPE+ALELLMAAN+LDC
Sbjct:   13 EYIKLISAEGHEFYIARKCAMVSGTIKAMLTGHFIESKGEIRFQDIGASILEKVIQYMYYKKRYSNSNARIPDFVIEPEIALELLMAANYLDC 105
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: XP_008872221.1 (hypothetical protein H310_08303 [Aphanomyces invadans] >ETV98793.1 hypothetical protein H310_08303 [Aphanomyces invadans])

HSP 1 Score: 142.5 bits (358), Expect = 7.000e-31
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 0 
Query:    7 KYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +Y+KLISAEGHEF + RKCA VS TI+AML G F ESKGEI+F +IS  ILEKVIQY+YYK R++NSN+++PDF +EPE+ALELLMAAN+LDC
Sbjct:   13 EYVKLISAEGHEFYIARKCAMVSGTIKAMLTGHFIESKGEIRFQDISAPILEKVIQYMYYKKRFSNSNARIPDFVIEPEIALELLMAANYLDC 105
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: CBJ30221.1 (RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Ectocarpus siliculosus])

HSP 1 Score: 138.3 bits (347), Expect = 1.300e-29
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 0 
Query:    1 MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTE-SKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            M  E  +++KL+SAEG EF VDRKCA VS TI+AML+GGF E + G++ F EIST ILEKVIQ++YYKVRYTNS +++P+F +EPE+ALELLMAANFLDC
Sbjct:    1 MATEDQEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: XP_009038876.1 (hypothetical protein AURANDRAFT_29207, partial [Aureococcus anophagefferens] >EGB06296.1 hypothetical protein AURANDRAFT_29207, partial [Aureococcus anophagefferens])

HSP 1 Score: 135.6 bits (340), Expect = 8.600e-29
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 0 
Query:   13 SAEGHEFIVDRKCACVSKTIEAMLAG-----GFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            SAEGHEF VDRKCA  S TI+AML+G      FTES GEIKFPEIST ILEKVIQY YYK+RYTNS  ++P+F+++PEMALELLMA+NFLDC
Sbjct:    1 SAEGHEFWVDRKCANTSGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92
[Close]
BLAST of NO26G00600 vs. NCBI_GenBank
Match: GBG31385.1 (Elongin-C [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 135.6 bits (340), Expect = 8.600e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:    8 YIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            Y+KLISAEGHEF +D++ A ++ TI AML G F+ESKGEI+FPEIST +LEKV+QYL+YK +YTNS+  +P+F ++PEM  +LLMAANFL+C
Sbjct:   28 YVKLISAEGHEFFLDKEVAMIATTISAMLTGNFSESKGEIRFPEISTKVLEKVVQYLHYKQKYTNSSQPIPEFDIDPEMVADLLMAANFLNC 119
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BLAST of NO26G00600 vs. NCBI_GenBank
Match: OWZ08931.1 (Transcription elongation factor B polypeptide 1 [Phytophthora megakarya])

HSP 1 Score: 135.2 bits (339), Expect = 1.100e-28
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 0 
Query:    9 IKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFPEISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC 100
            +KLISAEGHE  + RKCA VS TI AML+G FTESKGEI FP+IS  ILEKV QY+YYK +Y++S S++P+F +EPE+A+ELLMAAN+LDC
Sbjct:   15 VKLISAEGHEIYISRKCAMVSGTIRAMLSGQFTESKGEITFPDISAPILEKVSQYMYYKTQYSDSTSRLPEFNIEPEIAMELLMAANYLDC 105
The following BLAST results are available for this feature:
BLAST of NO26G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855940.14.700e-4388.89transcription elongation factor B, polypeptide 1 [... [more]
XP_008618991.14.000e-3473.68transcription elongation factor B, polypeptide 1 [... [more]
OQR94293.18.900e-3474.47transcription elongation factor B polypeptide 1 [A... [more]
OQS06752.17.500e-3369.70transcription elongation factor B polypeptide 1 [T... [more]
XP_009837007.12.400e-3172.04hypothetical protein H257_11701 [Aphanomyces astac... [more]
XP_008872221.17.000e-3170.97hypothetical protein H310_08303 [Aphanomyces invad... [more]
CBJ30221.11.300e-2967.00RNA polymerase II transcription elongation factor ... [more]
XP_009038876.18.600e-2972.83hypothetical protein AURANDRAFT_29207, partial [Au... [more]
GBG31385.18.600e-2964.13Elongin-C [Aurantiochytrium sp. FCC1311][more]
OWZ08931.11.100e-2868.13Transcription elongation factor B polypeptide 1 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL048nonsL048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR044ngnoR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006029NSK006029Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00600.1NO26G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600365gene_7881Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00600.1NO26G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00600 ID=NO26G00600|Name=NO26G00600|organism=Nannochloropsis oceanica|type=gene|length=726bp
ATGGAAGAAGAGCCCTCCAAGTACATCAAGCTCATCAGgtacgccttgag
ccccgtggtactggtgattatcgataacaggccctcgtcaccggtggcgg
taccggcgaagctcttggcacagcgaaagaaagacgagaaatgtacgact
gctctcctctagccctacacccgtcctccctcttgctgcctcgtcttgtc
ctccacatggcactccgtccgtgttgtctggcttccaactaccctttcat
ggtctgtgtcaactcgtgaacttttgccttccacttcctcgctgttaatg
tacttctctgcctttccccctccgtccctcccctttctccctcagTGCGG
AGGGCCACGAGTTCATCGTCGACCGCAAATGCGCCTGTGTCAGTAAAACC
ATCGAGGCCATGCTTGCAGGTGGCTTCACAGAAAGCAAAGGGGAAATCAA
GTTTCCTGAGATCTCTACCAATATTTTAGAGAAGGTTATACAGTACCTCT
ACTACAAGgtttgtatgtgtttacctcacataattatcatgccttcccac
ttcactctcctcgcatagccacccaactcacccaccacttcttttttgct
cacttgttttctccttccttcccccagGTCCGCTACACGAACTCCAATTC
TAAAGTCCCTGACTTTAAGTTGGAGCCTGAAATGGCCTTGGAGCTGTTGA
TGGCGGCTAACTTCTTAGACTGCTAG
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protein sequence of NO26G00600.1

>NO26G00600.1-protein ID=NO26G00600.1-protein|Name=NO26G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MEEEPSKYIKLISAEGHEFIVDRKCACVSKTIEAMLAGGFTESKGEIKFP
EISTNILEKVIQYLYYKVRYTNSNSKVPDFKLEPEMALELLMAANFLDC*
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Synonyms
Publications