NO26G00590, NO26G00590 (gene) Nannochloropsis oceanica

Overview
NameNO26G00590
Unique NameNO26G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2257
Alignment locationchr26:211993..214249 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:211993..214249 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO26G00590 vs. NCBI_GenBank
Match: EWM23090.1 (hypothetical protein Naga_100536g1 [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 4.900e-26
Identity = 125/223 (56.05%), Postives = 158/223 (70.85%), Query Frame = 0 
Query:    2 TLPELLSAAQAFLARHEYTQAKQLLQALIVEILRLNRLQRNHH--PSSLPPSSLQIPGTT------XXXXXXXXXXXXXXXXXXXXXXXXXLFHLAQAYYHEGQDFDQAAYCFLLSSKPYPPLSGLARENFRLSFSKSDVFSLFSQENKRMLEGGGIGAGQRLSSLFWDSGRHRRIVRAV-----XXXXXXXXXXXXXXXXXXXXXXXXGPTACILAILLARQ 212
            +LP++L++A++ LARH+   AK+LLQ++IV++L L RL       P S PPS       T      XXXXXXXXXXXXXXXXXXXXXX   LFHL QA Y EG+D+DQAAYCFLL+SKP+PPL+ +ARE+FR  F ++  F  FS+E + +    G+   QRL++LFWD+ RH ++ RA+       XXXXXXXXXXXXXXXXXX    GP+ACILAILLARQ
Sbjct:    6 SLPDMLASAKSSLARHDTQAAKRLLQSMIVQVLHLQRLHSKQRAPPPSFPPSFHTGINPTPPXXXXXXXXXXXXXXXXXXXXXXXXXXALALFHLGQALYQEGEDWDQAAYCFLLASKPWPPLANVAREHFRALFPETSAF--FSREMRDL----GVDGSQRLTALFWDTERHWQLARAMTRSLTGRXXXXXXXXXXXXXXXXXXVVVLGPSACILAILLARQ 222
The following BLAST results are available for this feature:
BLAST of NO26G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23090.14.900e-2656.05hypothetical protein Naga_100536g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL048nonsL048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR044ngnoR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006027NSK006027Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00590.1NO26G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100536g1gene7359Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00590.1NO26G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00590 ID=NO26G00590|Name=NO26G00590|organism=Nannochloropsis oceanica|type=gene|length=2257bp
ATGACCCTCCCCGAACTCCTCTCCGCTGCCCAGGCTTTCCTTGCCCGACA
TGAATACACGCAAGCCAAACAATTGCTGCAAGCCCTCATCGTTGAGATCC
TCCGCCTAAATCGCCTCCAGAGAAACCACCACCCTTCCTCTCTTCCTCCC
TCCTCCCTCCAAATCCCCGGCACCACATCCTCCTCCTCCTCCTCCTCCTC
CTCTTCCTCTTCCAGCGCGAACCTCAACCTCCCGCTTCTCCACGCTCACG
CCCTTTTCCATCTCGCGCAAGCCTACTACCACGAAGGGCAAGACTTCGAC
CAAGCAGCCTACTGCTTCCTTCTCTCTTCCAAGCCCTATCCCCCCCTCTC
GGGTCTAGCTCGCGAGAATTTTCGCCTGTCCTTTTCAAAAAGTGACGTCT
TTTCTTTGTTCAGTCAGGAGAACAAAAGGATGTTGGAGGGAGGGGGGATA
GGAGCAGGACAGCGGCTGAGCTCACTGTTTTGGGACAGTGGGAGGCATCG
CAGAATCGTGAGGGCGGTCAGGAGAAGTTTATTGATGAGGAGGGAGGGAG
GGAGGGGAGGAGGGGGGGGGGCGCCGTCTATTGTGCTTCTGGGGCCAACG
GCATGTATACTGGCCATCTTGCTAGCAAGACAGgtaagagagattagggg
aaaggagaaggatgactgctattctttaaaaaggaaagagggtagaaaaa
ggagaagagggagatggtcggggtgctttcggaagaataggagggcgctc
tctcaattttagacttcgacggggggaggattttgacaagttttttttgg
ggggggggcggggataaaatggtgtgactgagatgaggtttctcctacgg
tgcacgactcaaacaccttcccctcctctttcccctccacagGAAGTGTT
TGCATTGGACTATAACCTCCTTGTCGTGGAGGACTCACGCGTCGCCTCCC
TTTTGGGCAAAGCCACGTTGGAAGCCAACGgtacgcccttccctccctcc
ctccttcttcccgctccctccctgccttccttgccatcttggctgcttcg
tcgtccccgtcattttgacatccacatttccttacacatttaagatttct
gaattctctcccacccacaccctctccctccttccacccctccctccctc
cctccctccctccctccagGCGAGCTACCCGTCACCTTCCTCGACAGCAA
AACCCTCCTCTGCACGCCCGCCCTGAGAGACAAAGTTGCAGCCGTCGCTT
TCGATCCATTCCCCTACTCATTTCCCACCTCGTCCTCCGTCTCTTCCTCC
CCCTCCTCCTCCCCCTTGGCGCTCATCGGGCAGCTCCTGGCCACCCGTCG
GGCGACCGGCCTCCCCCCTCCCTCCCTCACTCCTTCCTTCCTCCGGGTAT
CTTTCCAGCTCGTACAAGGGGAGGGTGGGAAGGAGGGAGGGCTGCGGGAC
ATGACCCAAGTGGCGCCGAAGGAGGAAGGGGTGGTGTGTGGCTTGCACCT
AGGACACGTTATGGATGCCCTGGGGAAACGCGCCGTTCCCCTCGATGGCT
GGAGGGAGGGAGGAAAGAGGGGGGGAGGGAGGAGATATGTGCCGTTGATG
GGCGGCGAAGCCAGGGTGGAGGACGACTTGTCCATGACGATCTCAACCGA
AGACCTCGCGGCGGCAGGAGCATCAGCAGCAGGAGCAGCAGCAGGTGGTG
GTGGGGCACTTTCGTCCTCTGTCCCTCCATCGCTTTCTTCCTCCCTTGAG
CGGATCTGGACCTTCACTGTCACGCGTTCCGGGCAAGCGGAGGCTGTCTT
GTATTGGGTTGATGCCCTGGATGAAGACCATCGCCTCCTGGTGTCTTCCC
TCCCTCCCTCCTCTTCTCCCTCGTGCCACCCGCCCTCCACCCCCTCCTCC
AATTTCTCCAATTTCTCCGCGTCCTCCGCCTCTTCCTCTCTACCGTCCTC
CTCCCTTCATTGCTTTCCCATGATCTGGGTGGATTTCCAACCGTTTCCCG
TCCAAGCCGGACAGAGCCTCACCATTCACTGTCGCCTCGGCCCAGCCCTC
CCTCCCTCCCTCCCTCCCCCTTCCTCTGGCAGCAGCAGCAGGAGGAGGAT
GAGTGGGGAAGGAGGGATCAGCTGGGCGTGGCTTGATCCTTCTGACGTCC
GCTTTCTAGTCGATTACCAGGGGGGGCCGAGGGCGAGGGCGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGGGGATCCCTTCTTACCATTTCCCGATGTTGA
ACGATAG
back to top

protein sequence of NO26G00590.1

>NO26G00590.1-protein ID=NO26G00590.1-protein|Name=NO26G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MTLPELLSAAQAFLARHEYTQAKQLLQALIVEILRLNRLQRNHHPSSLPP
SSLQIPGTTSSSSSSSSSSSSSANLNLPLLHAHALFHLAQAYYHEGQDFD
QAAYCFLLSSKPYPPLSGLARENFRLSFSKSDVFSLFSQENKRMLEGGGI
GAGQRLSSLFWDSGRHRRIVRAVRRSLLMRREGGRGGGGGAPSIVLLGPT
ACILAILLARQEVFALDYNLLVVEDSRVASLLGKATLEANGELPVTFLDS
KTLLCTPALRDKVAAVAFDPFPYSFPTSSSVSSSPSSSPLALIGQLLATR
RATGLPPPSLTPSFLRVSFQLVQGEGGKEGGLRDMTQVAPKEEGVVCGLH
LGHVMDALGKRAVPLDGWREGGKRGGGRRYVPLMGGEARVEDDLSMTIST
EDLAAAGASAAGAAAGGGGALSSSVPPSLSSSLERIWTFTVTRSGQAEAV
LYWVDALDEDHRLLVSSLPPSSSPSCHPPSTPSSNFSNFSASSASSSLPS
SSLHCFPMIWVDFQPFPVQAGQSLTIHCRLGPALPPSLPPPSSGSSSRRR
MSGEGGISWAWLDPSDVRFLVDYQGGPRARAKEGGREGGRGDPFLPFPDV
ER*
back to top
Synonyms
Publications