NO26G00540, NO26G00540 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO26G00540 vs. NCBI_GenBank
Match: XP_005855938.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EKU20411.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 453.4 bits (1165), Expect = 6.300e-124 Identity = 232/334 (69.46%), Postives = 272/334 (81.44%), Query Frame = 0
Query: 6 ASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL 340
A S SS +L A AP+L LFLG+ ++ KPSFPVP G+AVVITGSSTGIGRH+AA LAA GFLVFAGVR + DV+ LV++YPGRV PLLLDVTD +GGV RAAEEV L + GG + LAGLVNNAGIG+A+PLEL+ L R RQVMEVNVVG+L V+QAF+P+LRRDQGRIINVGSAAGFTVP YGAYSSSK+ALEA+SDA RLELRPW ISVSLLEPGT+ESEIRRKN+GD PFK+L E Y LY+ +FDTYE RV AL+R AGS QLTTDAI+HALTS+TPQSRY++G YQGLSL R V+PF+PD++ DWGK+K + A+
Sbjct: 8 AHRSVSSLLL------ASAPLLVALFLGLIHSMTKPSFPVPPSGSAVVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQGRIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAPFKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKMIDLAV 335
BLAST of NO26G00540 vs. NCBI_GenBank
Match: EWM23099.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 453.4 bits (1165), Expect = 6.300e-124 Identity = 232/334 (69.46%), Postives = 272/334 (81.44%), Query Frame = 0
Query: 6 ASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL 340
A S SS +L A AP+L LFLG+ ++ KPSFPVP G+AVVITGSSTGIGRH+AA LAA GFLVFAGVR + DV+ LV++YPGRV PLLLDVTD +GGV RAAEEV L + GG + LAGLVNNAGIG+A+PLEL+ L R RQVMEVNVVG+L V+QAF+P+LRRDQGRIINVGSAAGFTVP YGAYSSSK+ALEA+SDA RLELRPW ISVSLLEPGT+ESEIRRKN+GD PFK+L E Y LY+ +FDTYE RV AL+R AGS QLTTDAI+HALTS+TPQSRY++G YQGLSL R V+PF+PD++ DWGK+K + A+
Sbjct: 53 AHRSVSSLLL------ASAPLLVALFLGLIHSMTKPSFPVPPSGSAVVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQGRIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAPFKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKMIDLAV 380
BLAST of NO26G00540 vs. NCBI_GenBank
Match: XP_004990606.1 (oxidoreductase [Salpingoeca rosetta] >EGD77262.1 oxidoreductase [Salpingoeca rosetta]) HSP 1 Score: 215.7 bits (548), Expect = 2.200e-52 Identity = 121/286 (42.31%), Postives = 177/286 (61.89%), Query Frame = 0
Query: 43 FPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
FPV G A++ITG+STGIGRHAA ELA G+ V+A VR +DVD L K ++P+++DVT + + A V+ + ++GG+ L GLVNNAGI +PLE LDR R + EVNV GV++V+QAF+P +R ++GRI+NVGS AGF PG +YS++KF LE ++DA R E+ P+ +SVS++EP V + I K+ G+ + + + Y F +E + + A ++TT AI HALTS TP++RYI+ G+ + + LPD + D
Sbjct: 28 FPVHDSG-AILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPD----QIASAVDTI--KKGGH-KLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRENKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGEAAATRWVSREMQDTYAWFFADFEEKRLKGEALADGPEVTTKAITHALTSRTPETRYIVANTYGIP-AKIAALINWLLPDRLGD 304
BLAST of NO26G00540 vs. NCBI_GenBank
Match: EWM22688.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 213.8 bits (543), Expect = 8.500e-52 Identity = 128/300 (42.67%), Postives = 184/300 (61.33%), Query Frame = 0
Query: 38 IIKPSFPVPAPG--AAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRR-DQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVP-FKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIK 334
+++ ++P P PG A +VI+G+STGIGRHAA LA GF V AGVR +D++ L ++ + P++LDVT+ RAA VER E +P+ GLVNNAG+G +P+EL +++ R++ EVNV+ V+ ++QAF+P LRR GRI+NVGSA G G G Y+SSK A+E ++D+ RLEL W +SVSL+ PG V+S + K G P DL YALY+ +F E V+ A +T+ AI HAL S P++RY++ G+ L R + LPD V D+ K++
Sbjct: 23 VLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASD--VRAA--VERA--EALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLR-GLCGLLPDRVVDFVKLR 315
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_015189063.1 (SDR family NAD(P)-dependent oxidoreductase [Gloeocapsa sp. PCC 7428] >AFZ31191.1 Retinol dehydrogenase [Gloeocapsa sp. PCC 7428]) HSP 1 Score: 213.4 bits (542), Expect = 1.100e-51 Identity = 124/279 (44.44%), Postives = 168/279 (60.22%), Query Frame = 0
Query: 51 AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPF-KDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
AVV+TG+STGIG A L GF VFAGVR +D L ++ P+ LDVTD + +T A ++V + GN L GLVNNAGI V PLE I + FR+ +EVNV G LAV+QAF+P LR +GRI+N+GS G + P GAYS+SKFALEA++DA RLELRPW I V+++EPG + + I +K+L + LP+ A+ LY T L + S A+VHALT+ P++RY++G Q + A ++ FLPD + D
Sbjct: 8 AVVVTGASTGIGAACAVRLDQLGFQVFAGVRTNADAQALQAKASPKLTPIFLDVTDLD-SITAAMQKVAIAV----GNSGLIGLVNNAGIAVGAPLEFIPITEFRKQLEVNVTGQLAVTQAFLPLLRLAKGRIVNMGSITGRSATPFLGAYSASKFALEALTDALRLELRPWGIWVAIIEPGAISTPIWQKSLSQADTLQQSLPQPAHELYGQPMKTASLGAATLAQKGISPDKVAQAVVHALTAKRPKTRYLVG--QDARIRA----MLKFLPDRIVD 275
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_087542004.1 (DUF1776 domain-containing protein [Nostocales cyanobacterium HT-58-2] >ARV60699.1 short-chain dehydrogenase/reductase [Nostocales cyanobacterium HT-58-2]) HSP 1 Score: 213.0 bits (541), Expect = 1.400e-51 Identity = 121/279 (43.37%), Postives = 174/279 (62.37%), Query Frame = 0
Query: 51 AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFK-DLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
AVV+TG+STGIG A L GF VFAGVR D L + R+ P+ LDVTD + A R + + G+ L GLVNNAGI VA LE + D FR+ +EVNV+G LAV+Q+FI LR+ QGRI+N+GS G + P GAY++SKFA+EA++D R+ELRPW IS+S++EPG + + I +K+L + + +LP++A+ LY + + R + +N SA +A++HALT+ P++RY++G Q + A V+ LPD V+D
Sbjct: 8 AVVVTGASTGIGEACALHLDKLGFQVFAGVRREMDAQTLKQKSSFRLNPIFLDVTDANSIASAA-----RTVADAVGDAGLFGLVNNAGIAVAGSLEFLPTDEFRKQIEVNVIGQLAVTQSFIMLLRQAQGRIVNIGSIGGRSAAPFLGAYNASKFAMEALTDVLRMELRPWGISISIIEPGAIATPIWKKSLTEMDRIRQNLPQQAHKLYGNAINAVGNRAATMAQNGISADRVAEAVIHALTAKKPKTRYLVG--QDARIRA----VLNLLPDRVRD 275
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_094328098.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont' 213] >OYD98796.1 short-chain dehydrogenase/reductase [Nostoc sp. 'Peltigera membranacea cyanobiont' 213]) HSP 1 Score: 211.5 bits (537), Expect = 4.200e-51 Identity = 128/285 (44.91%), Postives = 171/285 (60.00%), Query Frame = 0
Query: 45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
V A VV+TG+STGIG+ A L GF VFAGVR D L + R++P+ LDVTD E A V+RV GG + GLVNNAGI V PLEL+++ F+ M+VNV G LAV+QAF+ LR+ +GRIIN+GS AG + P GAY++SKFALEA+SD R+ELRPW ISVS++EPG++ + I K+L V DLP+ A LY + ++ L SA + +VHALT+ P++RY++G Q L A + LPD + D
Sbjct: 2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQEIDAQTLKQKGSPRLIPIFLDVTDAES----IAAAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQYQMQVNVTGQLAVTQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_094342026.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont' 232] >OYE05025.1 short-chain dehydrogenase/reductase [Nostoc sp. 'Peltigera membranacea cyanobiont' 232]) HSP 1 Score: 211.1 bits (536), Expect = 5.500e-51 Identity = 127/285 (44.56%), Postives = 171/285 (60.00%), Query Frame = 0
Query: 45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
V A VV+TG+STGIG+ A L GF VFAGVR D L + R++P+ LDVTD E A V+RV GG + GLVNNAGI V PLEL+++ F+ M+VNV G LA++QAF+ LR+ +GRIIN+GS AG + P GAY++SKFALEA+SD R+ELRPW ISVS++EPG++ + I K+L V DLP+ A LY + ++ L SA + +VHALT+ P++RY++G Q L A + LPD + D
Sbjct: 2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQDIDAQTLKQKGSPRLIPIFLDVTDAES----IAAAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQHQMQVNVTGQLAITQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_104901086.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont N6'] >AVH66725.1 short-chain dehydrogenase/reductase SDR [Nostoc sp. 'Peltigera membranacea cyanobiont N6']) HSP 1 Score: 211.1 bits (536), Expect = 5.500e-51 Identity = 128/285 (44.91%), Postives = 171/285 (60.00%), Query Frame = 0
Query: 45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
V A VV+TG+STGIG+ A L GF VFAGVR D L + R++P+ LDVTD E A V+RV GG + GLVNNAGI V PLEL+++ F+ M+VNV G LAV+QAF+ LR+ +GRIIN+GS AG + P GAY++SKFALEA+SD R+ELRPW ISVS++EPG++ + I K+L V DLP+ A LY + ++ L SA + +VHALT+ P++RY++G Q L A + LPD + D
Sbjct: 2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQEIDAQTLKQKGSPRLIPIFLDVTDAES----IAVAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQYQMQVNVTGQLAVTQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_069070203.1 (DUF1776 domain-containing protein [Nostoc sp. KVJ20] >ODG97569.1 short-chain dehydrogenase/reductase [Nostoc sp. KVJ20]) HSP 1 Score: 210.3 bits (534), Expect = 9.300e-51 Identity = 122/278 (43.88%), Postives = 169/278 (60.79%), Query Frame = 0
Query: 52 VVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
VV+TG+STGIG+ A L GF VFAGVR D L + R++P+ LDVTD E + A E+V + G + GLVNNAGI V PLEL+++ F+Q M VNV G LAV+Q F+ LR+ +GRI+N+GS AG + P GAY++SKFAL A++D R+ELRPW ISVS++EPG + + I K+L + +DLP+ A LY + ++ L SA + A+VHALT+ P++RY++G Q L A + LPDH+ D
Sbjct: 9 VVVTGASTGIGQACALLLDQLGFSVFAGVRQDIDAQTLKQKGSQRLIPIFLDVTDAE-SIAAAVEQVTNAV----GGAGILGLVNNAGIAVPGPLELLAIAEFQQQMLVNVTGQLAVTQGFLGLLRQSRGRIVNMGSIAGRSPAPFMGAYNASKFALVALTDVMRMELRPWGISVSIIEPGAIATPIWEKSLSQSEIAQQDLPQSAQNLYGQAMNIVRKKMQILASQGISADIVAQAVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDHLHD 276 The following BLAST results are available for this feature:
BLAST of NO26G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO26G00540 ID=NO26G00540|Name=NO26G00540|organism=Nannochloropsis oceanica|type=gene|length=1583bpback to top protein sequence of NO26G00540.1 >NO26G00540.1-protein ID=NO26G00540.1-protein|Name=NO26G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bpback to top Synonyms
Publications
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