NO26G00540, NO26G00540 (gene) Nannochloropsis oceanica

Overview
NameNO26G00540
Unique NameNO26G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1583
Alignment locationchr26:192975..194557 -

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Properties
Property NameValue
DescriptionShort-chain dehydrogenase reductase sdr
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:192975..194557 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR002347Glc/ribitol_DH
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO26G00540 vs. NCBI_GenBank
Match: XP_005855938.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526] >EKU20411.1 short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 453.4 bits (1165), Expect = 6.300e-124
Identity = 232/334 (69.46%), Postives = 272/334 (81.44%), Query Frame = 0
Query:    6 ASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL 340
            A  S SS +L      A AP+L  LFLG+  ++ KPSFPVP  G+AVVITGSSTGIGRH+AA LAA GFLVFAGVR + DV+ LV++YPGRV PLLLDVTD +GGV RAAEEV   L + GG + LAGLVNNAGIG+A+PLEL+ L R RQVMEVNVVG+L V+QAF+P+LRRDQGRIINVGSAAGFTVP  YGAYSSSK+ALEA+SDA RLELRPW ISVSLLEPGT+ESEIRRKN+GD  PFK+L E  Y LY+ +FDTYE RV AL+R AGS QLTTDAI+HALTS+TPQSRY++G YQGLSL   R  V+PF+PD++ DWGK+K +  A+
Sbjct:    8 AHRSVSSLLL------ASAPLLVALFLGLIHSMTKPSFPVPPSGSAVVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQGRIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAPFKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKMIDLAV 335          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: EWM23099.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 453.4 bits (1165), Expect = 6.300e-124
Identity = 232/334 (69.46%), Postives = 272/334 (81.44%), Query Frame = 0
Query:    6 ASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL 340
            A  S SS +L      A AP+L  LFLG+  ++ KPSFPVP  G+AVVITGSSTGIGRH+AA LAA GFLVFAGVR + DV+ LV++YPGRV PLLLDVTD +GGV RAAEEV   L + GG + LAGLVNNAGIG+A+PLEL+ L R RQVMEVNVVG+L V+QAF+P+LRRDQGRIINVGSAAGFTVP  YGAYSSSK+ALEA+SDA RLELRPW ISVSLLEPGT+ESEIRRKN+GD  PFK+L E  Y LY+ +FDTYE RV AL+R AGS QLTTDAI+HALTS+TPQSRY++G YQGLSL   R  V+PF+PD++ DWGK+K +  A+
Sbjct:   53 AHRSVSSLLL------ASAPLLVALFLGLIHSMTKPSFPVPPSGSAVVITGSSTGIGRHSAAGLAAAGFLVFAGVRRVRDVETLVEAYPGRVFPLLLDVTDHDGGVMRAAEEVRETLEDMGGKVKLAGLVNNAGIGLAMPLELLPLSRLRQVMEVNVVGLLGVTQAFLPQLRRDQGRIINVGSAAGFTVPVTYGAYSSSKYALEAISDALRLELRPWRISVSLLEPGTIESEIRRKNVGDAAPFKNLTESQYVLYQQIFDTYEQRVDALERAAGSPQLTTDAILHALTSSTPQSRYVLGAYQGLSLWLLRHVVLPFVPDYLLDWGKMKMIDLAV 380          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: XP_004990606.1 (oxidoreductase [Salpingoeca rosetta] >EGD77262.1 oxidoreductase [Salpingoeca rosetta])

HSP 1 Score: 215.7 bits (548), Expect = 2.200e-52
Identity = 121/286 (42.31%), Postives = 177/286 (61.89%), Query Frame = 0
Query:   43 FPVPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            FPV   G A++ITG+STGIGRHAA ELA  G+ V+A VR  +DVD L K     ++P+++DVT  +    + A  V+ +  ++GG+  L GLVNNAGI   +PLE   LDR R + EVNV GV++V+QAF+P +R ++GRI+NVGS AGF   PG  +YS++KF LE ++DA R E+ P+ +SVS++EP  V + I  K+ G+    + +  +    Y   F  +E +    +  A   ++TT AI HALTS TP++RYI+    G+  +     +   LPD + D
Sbjct:   28 FPVHDSG-AILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPD----QIASAVDTI--KKGGH-KLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRENKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGEAAATRWVSREMQDTYAWFFADFEEKRLKGEALADGPEVTTKAITHALTSRTPETRYIVANTYGIP-AKIAALINWLLPDRLGD 304          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: EWM22688.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 213.8 bits (543), Expect = 8.500e-52
Identity = 128/300 (42.67%), Postives = 184/300 (61.33%), Query Frame = 0
Query:   38 IIKPSFPVPAPG--AAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRR-DQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVP-FKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIK 334
            +++ ++P P PG  A +VI+G+STGIGRHAA  LA  GF V AGVR  +D++ L  ++   + P++LDVT+      RAA  VER   E    +P+ GLVNNAG+G  +P+EL  +++ R++ EVNV+ V+ ++QAF+P LRR   GRI+NVGSA G     G G Y+SSK A+E ++D+ RLEL  W +SVSL+ PG V+S +  K  G   P   DL    YALY+ +F   E  V+        A +T+ AI HAL S  P++RY++    G+ L   R  +   LPD V D+ K++
Sbjct:   23 VLRRAYPAPPPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASD--VRAA--VERA--EALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPGGRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMWGKLTGQNAPAINDLSADQYALYKPLFLQVEKAVSGFIPKLSPASVTSQAIAHALMSPQPKTRYLVASVNGVPLWLLR-GLCGLLPDRVVDFVKLR 315          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_015189063.1 (SDR family NAD(P)-dependent oxidoreductase [Gloeocapsa sp. PCC 7428] >AFZ31191.1 Retinol dehydrogenase [Gloeocapsa sp. PCC 7428])

HSP 1 Score: 213.4 bits (542), Expect = 1.100e-51
Identity = 124/279 (44.44%), Postives = 168/279 (60.22%), Query Frame = 0
Query:   51 AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPF-KDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            AVV+TG+STGIG   A  L   GF VFAGVR  +D   L      ++ P+ LDVTD +  +T A ++V   +    GN  L GLVNNAGI V  PLE I +  FR+ +EVNV G LAV+QAF+P LR  +GRI+N+GS  G +  P  GAYS+SKFALEA++DA RLELRPW I V+++EPG + + I +K+L       + LP+ A+ LY     T       L +   S      A+VHALT+  P++RY++G  Q   + A    ++ FLPD + D
Sbjct:    8 AVVVTGASTGIGAACAVRLDQLGFQVFAGVRTNADAQALQAKASPKLTPIFLDVTDLD-SITAAMQKVAIAV----GNSGLIGLVNNAGIAVGAPLEFIPITEFRKQLEVNVTGQLAVTQAFLPLLRLAKGRIVNMGSITGRSATPFLGAYSASKFALEALTDALRLELRPWGIWVAIIEPGAISTPIWQKSLSQADTLQQSLPQPAHELYGQPMKTASLGAATLAQKGISPDKVAQAVVHALTAKRPKTRYLVG--QDARIRA----MLKFLPDRIVD 275          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_087542004.1 (DUF1776 domain-containing protein [Nostocales cyanobacterium HT-58-2] >ARV60699.1 short-chain dehydrogenase/reductase [Nostocales cyanobacterium HT-58-2])

HSP 1 Score: 213.0 bits (541), Expect = 1.400e-51
Identity = 121/279 (43.37%), Postives = 174/279 (62.37%), Query Frame = 0
Query:   51 AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFK-DLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            AVV+TG+STGIG   A  L   GF VFAGVR   D   L +    R+ P+ LDVTD     + A     R + +  G+  L GLVNNAGI VA  LE +  D FR+ +EVNV+G LAV+Q+FI  LR+ QGRI+N+GS  G +  P  GAY++SKFA+EA++D  R+ELRPW IS+S++EPG + + I +K+L +    + +LP++A+ LY +  +    R   + +N  SA    +A++HALT+  P++RY++G  Q   + A    V+  LPD V+D
Sbjct:    8 AVVVTGASTGIGEACALHLDKLGFQVFAGVRREMDAQTLKQKSSFRLNPIFLDVTDANSIASAA-----RTVADAVGDAGLFGLVNNAGIAVAGSLEFLPTDEFRKQIEVNVIGQLAVTQSFIMLLRQAQGRIVNIGSIGGRSAAPFLGAYNASKFAMEALTDVLRMELRPWGISISIIEPGAIATPIWKKSLTEMDRIRQNLPQQAHKLYGNAINAVGNRAATMAQNGISADRVAEAVIHALTAKKPKTRYLVG--QDARIRA----VLNLLPDRVRD 275          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_094328098.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont' 213] >OYD98796.1 short-chain dehydrogenase/reductase [Nostoc sp. 'Peltigera membranacea cyanobiont' 213])

HSP 1 Score: 211.5 bits (537), Expect = 4.200e-51
Identity = 128/285 (44.91%), Postives = 171/285 (60.00%), Query Frame = 0
Query:   45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            V A    VV+TG+STGIG+  A  L   GF VFAGVR   D   L +    R++P+ LDVTD E      A  V+RV    GG   + GLVNNAGI V  PLEL+++  F+  M+VNV G LAV+QAF+  LR+ +GRIIN+GS AG +  P  GAY++SKFALEA+SD  R+ELRPW ISVS++EPG++ + I  K+L    V   DLP+ A  LY    +    ++  L     SA +    +VHALT+  P++RY++G  Q   L A    +   LPD + D
Sbjct:    2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQEIDAQTLKQKGSPRLIPIFLDVTDAES----IAAAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQYQMQVNVTGQLAVTQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_094342026.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont' 232] >OYE05025.1 short-chain dehydrogenase/reductase [Nostoc sp. 'Peltigera membranacea cyanobiont' 232])

HSP 1 Score: 211.1 bits (536), Expect = 5.500e-51
Identity = 127/285 (44.56%), Postives = 171/285 (60.00%), Query Frame = 0
Query:   45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            V A    VV+TG+STGIG+  A  L   GF VFAGVR   D   L +    R++P+ LDVTD E      A  V+RV    GG   + GLVNNAGI V  PLEL+++  F+  M+VNV G LA++QAF+  LR+ +GRIIN+GS AG +  P  GAY++SKFALEA+SD  R+ELRPW ISVS++EPG++ + I  K+L    V   DLP+ A  LY    +    ++  L     SA +    +VHALT+  P++RY++G  Q   L A    +   LPD + D
Sbjct:    2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQDIDAQTLKQKGSPRLIPIFLDVTDAES----IAAAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQHQMQVNVTGQLAITQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_104901086.1 (DUF1776 domain-containing protein [Nostoc sp. 'Peltigera membranacea cyanobiont N6'] >AVH66725.1 short-chain dehydrogenase/reductase SDR [Nostoc sp. 'Peltigera membranacea cyanobiont N6'])

HSP 1 Score: 211.1 bits (536), Expect = 5.500e-51
Identity = 128/285 (44.91%), Postives = 171/285 (60.00%), Query Frame = 0
Query:   45 VPAPGAAVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            V A    VV+TG+STGIG+  A  L   GF VFAGVR   D   L +    R++P+ LDVTD E      A  V+RV    GG   + GLVNNAGI V  PLEL+++  F+  M+VNV G LAV+QAF+  LR+ +GRIIN+GS AG +  P  GAY++SKFALEA+SD  R+ELRPW ISVS++EPG++ + I  K+L    V   DLP+ A  LY    +    ++  L     SA +    +VHALT+  P++RY++G  Q   L A    +   LPD + D
Sbjct:    2 VVANQGTVVVTGASTGIGQACALLLDQLGFSVFAGVRQEIDAQTLKQKGSPRLIPIFLDVTDAES----IAVAVDRVTNAVGGT-GILGLVNNAGIAVPGPLELLAIAEFQYQMQVNVTGQLAVTQAFLGLLRQSRGRIINMGSIAGRSPTPFLGAYNASKFALEALSDVMRMELRPWGISVSIIEPGSIATPIWEKSLSQSEVAQYDLPQSAQNLYGQAMNIVRKKMQVLASKGISADIVAQTVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDRLHD 276          
BLAST of NO26G00540 vs. NCBI_GenBank
Match: WP_069070203.1 (DUF1776 domain-containing protein [Nostoc sp. KVJ20] >ODG97569.1 short-chain dehydrogenase/reductase [Nostoc sp. KVJ20])

HSP 1 Score: 210.3 bits (534), Expect = 9.300e-51
Identity = 122/278 (43.88%), Postives = 169/278 (60.79%), Query Frame = 0
Query:   52 VVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPLLLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELISLDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGAYSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDG-VPFKDLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSRYIIGKYQGLSLSAFRIFVMPFLPDHVQD 329
            VV+TG+STGIG+  A  L   GF VFAGVR   D   L +    R++P+ LDVTD E  +  A E+V   +    G   + GLVNNAGI V  PLEL+++  F+Q M VNV G LAV+Q F+  LR+ +GRI+N+GS AG +  P  GAY++SKFAL A++D  R+ELRPW ISVS++EPG + + I  K+L    +  +DLP+ A  LY    +    ++  L     SA +   A+VHALT+  P++RY++G  Q   L A    +   LPDH+ D
Sbjct:    9 VVVTGASTGIGQACALLLDQLGFSVFAGVRQDIDAQTLKQKGSQRLIPIFLDVTDAE-SIAAAVEQVTNAV----GGAGILGLVNNAGIAVPGPLELLAIAEFQQQMLVNVTGQLAVTQGFLGLLRQSRGRIVNMGSIAGRSPAPFMGAYNASKFALVALTDVMRMELRPWGISVSIIEPGAIATPIWEKSLSQSEIAQQDLPQSAQNLYGQAMNIVRKKMQILASQGISADIVAQAVVHALTAKQPKTRYLVG--QDAKLGA---VLKHILPDHLHD 276          
The following BLAST results are available for this feature:
BLAST of NO26G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855938.16.300e-12469.46short-chain dehydrogenase reductase sdr [Nannochlo... [more]
EWM23099.16.300e-12469.46short-chain dehydrogenase reductase sdr [Nannochlo... [more]
XP_004990606.12.200e-5242.31oxidoreductase [Salpingoeca rosetta] >EGD77262.1 o... [more]
EWM22688.18.500e-5242.67short-chain dehydrogenase reductase sdr [Nannochlo... [more]
WP_015189063.11.100e-5144.44SDR family NAD(P)-dependent oxidoreductase [Gloeoc... [more]
WP_087542004.11.400e-5143.37DUF1776 domain-containing protein [Nostocales cyan... [more]
WP_094328098.14.200e-5144.91DUF1776 domain-containing protein [Nostoc sp. 'Pel... [more]
WP_094342026.15.500e-5144.56DUF1776 domain-containing protein [Nostoc sp. 'Pel... [more]
WP_104901086.15.500e-5144.91DUF1776 domain-containing protein [Nostoc sp. 'Pel... [more]
WP_069070203.19.300e-5143.88DUF1776 domain-containing protein [Nostoc sp. KVJ2... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL048nonsL048Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR044ngnoR044Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006021NSK006021Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00540.1NO26G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545772gene_7875Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100334g1gene7352Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00540.1NO26G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00540 ID=NO26G00540|Name=NO26G00540|organism=Nannochloropsis oceanica|type=gene|length=1583bp
CCCCCCTCCTTCTCCTGGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGA
TGAAAAACCTGTTAAAGTCGCCAGTAAAACTCGGACAAAAGTAAGGGGTG
AATGTGCAACAATATATTGTTGGACGGCTCCCCATCGTATGCAAGTCCTA
GAGGACGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTAAAGGAACTAA
CCTCCCCACTTGTCAAGTCATCAAGTACCATCACGCTGTCCATGCATGCA
TGCTGATGCTGCTTAATCTTCGCCCGCTTGCCGCTTGTCTGTGAACTCAT
TACGTGAACTCTCAATTCACACCAGAACATACACGATGCATGGTAGGACG
TAGCTGCAGCCACCATCATGCCGCCTTCCCATGCTTCTTCCTCAACCTCC
TCGTCCATCCTTTCGGGCTACTTCAAATTTGCAATCGCCCCCATTCTCTT
TCCTCTGTTCCTCGGCGTCTTTAGCAACATCATAAAGCCTTCCTTTCCCG
TCCCTGCCCCTGGAGCGGCGGTCGTCATTACCGGTAGCAGCACTGGGATA
GGACGTCATGCTGCTGCCGAGCTGGCTGCCGACGGCTTCTTGGTCTTCGC
GGGCGTCCGAAACCTGAGCGATGTGGATGGTCTGGTAAAGTCTTATCCAG
GACGGGTGGTACCTTTGCTACTGGATGTGACCGATACGGAGGGGGGCGTG
ACACGTGCGGCGGAGGAAGTGGAGCGGGTCTTGCGGGAAAGGGGGGGCAA
CATTCCCTTGGCCGGTTTGGTGAATAACGCAGGGATTGgtgcgtttaccg
tatcctgtccgctctgaaaaggcctgatatctctcaatttttaaaaactc
actgccattccaacttttacaaacaaatgacccagGTGTTGCGCTTCCCT
TGGAACTTATTTCCCTCGACAGGTTCAGGCAAGTCATGGAAGTGAATGTC
GTGGGCGTCCTCGCAGTCTCTCAAGCCTTTATTCCACGGCTTCGTCGCGA
CCAAGGTCGCATCATCAATGTAGGAAGTGCCGCAGGTTTCACGGTCCCAC
CAGGATATGGCGCATACTCAAGCAGTAAATTCGCCTTGGAAGCTGTATCA
GACGCGTTCCGCTTGGAATTACGGCCGTGGAATATCTCAGTCTCTTTGCT
CGAGCCGGGTACCGTAGAGAGCGAGATTCGGCGGAAGAATTTGGGGGATG
GTGTCCCATTCAAGGATCTACCGGAGAAGGCTTATGCACTGTATCGACAC
ATGTTTGATACATACGAAGCACGCGTGACAGCACTGGACCGCAATGCAGG
GTCAGCGCAGTTGACAACAGACGCCATCGTGCATGCCTTGACGAGCGCAA
CGCCGCAAAGCCGTTATATTATTGGGAAATATCAGGGTTTAAGTTTGAGT
GCCTTTCGTATTTTTGTTATGCCATTTCTACCGGACCATGTGCAGGACTG
GGGTAAAATCAAATCCCTTCAAAAAGCCCTGTGATTGTGGCGAAGGAGTG
ATGGGGTTGAAGATAGAGTTGGGCGAATCAATAACTGAGATAGAAGAGTT
GGTGCATGTAATGAAAGAAAACTTACAGGGGGA
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protein sequence of NO26G00540.1

>NO26G00540.1-protein ID=NO26G00540.1-protein|Name=NO26G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPPSHASSSTSSSILSGYFKFAIAPILFPLFLGVFSNIIKPSFPVPAPGA
AVVITGSSTGIGRHAAAELAADGFLVFAGVRNLSDVDGLVKSYPGRVVPL
LLDVTDTEGGVTRAAEEVERVLRERGGNIPLAGLVNNAGIGVALPLELIS
LDRFRQVMEVNVVGVLAVSQAFIPRLRRDQGRIINVGSAAGFTVPPGYGA
YSSSKFALEAVSDAFRLELRPWNISVSLLEPGTVESEIRRKNLGDGVPFK
DLPEKAYALYRHMFDTYEARVTALDRNAGSAQLTTDAIVHALTSATPQSR
YIIGKYQGLSLSAFRIFVMPFLPDHVQDWGKIKSLQKAL*
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Synonyms
Publications