NO26G00400, NO26G00400 (gene) Nannochloropsis oceanica

Overview
NameNO26G00400
Unique NameNO26G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5069
Alignment locationchr26:124253..129321 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:124253..129321 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO26G00400 vs. NCBI_GenBank
Match: EWM23075.1 (hypothetical protein Naga_101757g1 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 9.400e-19
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 0
Query: 1104 RELLMALRLFSQELQNDLALASARGEAADTGAQAAREGLLARARARDPTLLPILSRALLEGIKPASPLVVVPQGEGTVGARAEA--VKAEANEVLVWHLQNKALEALV 1210
            RE  +ALRLF  ++QND++ A  RGE AD   QAARE LL RAR RDPTL P+L +ALL+G KP  PL+V  +  G  G  AEA  V AEA EVLVWHLQNKAL+ LV
Sbjct:  167 RERTLALRLFETQIQNDVSFALFRGE-ADKSTQAARENLLLRARTRDPTLFPVLEKALLQGKKPPLPLLVAKRA-GWEGGEAEASTVAAEAQEVLVWHLQNKALQVLV 272          
The following BLAST results are available for this feature:
BLAST of NO26G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23075.19.400e-1960.19hypothetical protein Naga_101757g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR009ncniR009Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00400.1NO26G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614977gene_11382Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101757g1gene7376Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00400.1NO26G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00400 ID=NO26G00400|Name=NO26G00400|organism=Nannochloropsis oceanica|type=gene|length=5069bp
ATGTCCTCCCGCCGCTCGGCCATCGCCGCTGCTGCCGCCTCTTCTGGCGG
TCCTGCAACCACCGGCAGCAACGACAACAACATCTACAATAGCAACGACG
ACGACAACGGCAACAACATGAAAGGTCAAGGGGGAGGGCAGGCGATGAAA
GAGGAGAAGGAGAAAGAGGAGGGCAGTGGTGGAGAAGAAAGGGAAAAAGT
GGAATCAGAAGGAGGGGGAAGGACTGGTGCCGAAGGGGGGAAGGATCAAG
CGGAGGCCGACGACGTTCGCCGGAGCCATCGTCGTCGTTCCTTGTCTGCA
CGCATGGCAGCATCCTCCTCCTCCTCCTCCCTCGCTTCCTCCTCCGCCGT
CCACGAAGCCGCCACCGCCGGCACTGGCGGTGGAGGGTCTCCCTCCCTAC
CTTCCTCTCACCCTCACTCCGGCGACGCCTCCATCGCCTCTTCCTCTGAC
TCCATTTCCTCCTTCTCCTCTTCTTCCGCCGCTCGTCCAAATCGTGAAAA
CTCTCCCCCGCCATCGCCTCCGACCCGCCATCCTTCTTCGTCGGGCCACG
AGGCAAGGAGTGATGGCAGCCACGGCCCTCCCCCCCCTCCCTCCTCCTTC
GCCTCCTCCTACCCCAACATACCTCCTCTCCCTCTCCCTATCCCTCCTCC
TCCCCCTCCTCCTCCTTCTGGCCAAGGACAGCAGTCCCTCTTCCCCACTT
CAATGCCCTTCCTCCCCCACCTACCCCATGACGCTCCTCCTCCCCCCAAC
GCGGATGGGACCAGCAGCCACCACCTCCCGCATGCCTATCCGCCCTTCCC
CCCTCCTCCCCACCCTCCCTCTGAGTCTCTGTATCAGCAGCAGCAGCAGC
AGCAGCAGCATCCTGAGCATCCCCTTAGCGACGACGACGACGAAGACGAC
GATGGTTCTGGTGGAGGAGGAGGAGGAGGGCGGGAAGGAGGGAAGTCAGG
GTTCCGGGTTGACCGAGAAGCCTCCTCGGACCCTAGGAAAAAATGCGGAC
AAGACGGATGCAATCGGCGTTACCGACGGCCCGGGATATACTGCGCTAAG
CACGGGGGGGGTCGGTGCGAATGGCCGGGATGCTTGTTGATGCACACGGG
AAAGGAGGGCGAGCGTTATTTTTGCCGAAAGCACCTGGGCAGGAATGACC
TGTCCAACCTCGCCGTGAGGGAGGAGAGACAAGAGCAGCGCATCGGCAAG
CGCATTGCCGCGAACGTGTACATTGTTCCATCTCCCGGTTGTTCCTTGCC
CGTGGCATCATCCTTCGGTCCCTCGGCAATTACCTCGGCTACCGGCACCC
GTTGGAGCACGTACTGCATCCCCTTGGGAGGACGGAAGGCGAATTTCAAA
CGGCGCAACCCTTTGGGTGGGCCTGACATTCTTGTGCCTGGTGCACACCT
TCCCTACCGGCGTGATCGATTGTGCCGGGAGGTAAAGTGCACCTACAGgt
aagatggtgtttgctgtcggttgtcggttggtaatgtcgtcagtttagtt
ttttgtgtgtttgtttattgtttgtttgtttgactgattgatcgattgaa
tagcttttcaccatttgaaaggcttgagagaatagtggtagaagagaaat
gtggctctacttgccctccctccttcccttccctccttcaaacacgccct
tccggacgagaaataaaccaagaaagaaactaagcttaacgatactccct
ccttccctccctccttccctccctcagATACCGTAGCCCCGGATTTTTGT
GTGAGAGACACGGCGGTGgtcggtgcgagtggccagactgcacccggctc
caccaagggaagcaagggatgccgtatttcttctgccgtcgtcattctcg
cgccttttttgcggagtggacgctgaggcagaaagagggaggggtgttcg
ggccggatggagatatcaagATGGAAGCTGGCGGGGGGGGGGGGGGTTCG
GCGCTGCTGCACAGGCCGTGGTGGCAGCCGGGGGGAAGGGGAAGAAGGGA
GCAAAAGGGAAGGCGAAAGTGAGGGGGAGGAAGAAGGGAGGAGGAGCAGG
AGGAGCAGGAGGAGCAGGAGGAGCAGGAAAAGGACAGAAGAGGGGTGTCA
AAGGGAAGAGGGGGAAGAAGGGGGACGAAGAAGAGGAGGAGGATGAAGAA
GATGATGATAGGATGGAGAACGAGGAAGAGGAGGAGGAGGAGGAGGAGAT
GGCAGGGCGTTTCGCACCGATGGAGTCAGGGGAAGGAAGAGGGAGGGTAG
GAAGAAGGGATGGAGGACGAGGGGGAGTGGCAACGACGTCGATGCAGCGT
GCGTTAGGCCATGGTGGAGGAGCAGGGAGAAAGTCCCGGAGTGGAAGGAC
ACCTGGACATAAAGCGGGAGGGGAAGGAGGAGGAGGAGGGGGGGGGCTGG
GGGCGTTGTTGAGCGCGATCCAGGATTACGACGAGGAGGAGGAAGAGGAG
GAGGATGACGACATTGATCATATGGACGAGGACGAGGACGAGGAAGAGGA
GGAGCGACGACACCAACCACTCAACCACCCTCCCTCGCTTCCCCCTTCGG
CCCTGCCTGCTGTCCCTCTCCCCAGTAGCCACAGCAACAGCAACATCAGC
AGCAATAATGCCACCTCCAGTCCCACGAAGCCTCTGCAGAGGCCATCTTC
CATTCCCTCCTCCCTCCCCGCTACCGGCATGTCCGCTCTTCCTTCCTCCC
TCCCTAACTCAGCCCACCCCTCCTCCATCTCCTCCATGACGACCTCCCAA
GCCGCTGCCGGTGCACTTGCTCCGCACGATCCAAGCTCTCGCAGGCCAAA
AACGGACGGTGAAGGAGGAGGGGGAGGGATTGGGATGACTGCCTCTTACC
CCTTCCCACTACCGCCTCCTCCCCTTCACTACCACAACCACCTTCAGCCT
CCCTATGGCCATCCCCAGCAGCACCAACAGCACCAACAGGGACCCTACCA
GCAGCCGCAGCACCAGCAATTCCATCCCCACTACATGCAGCACCAACATC
ACCACCCCCCTCCCTATGGGCAACAGCAGCATCAACAGCAGCTTCAGCAG
CCAGGAGTCTACCCGCCCTACGCGTACGGAGCCTATCCCCCTCATCCTAC
CCATCCTCCGCCTCCTCCTCCCCACTCCGACTACGCCTCATTCCAGCCCT
CCTCCTCTCATATAAGCATGACTCCGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACAGCAGTACCACAACCACTACATGAACCATCAACAGCACCAACA
GCACCAGCAGCACTACCACCACCACTCGCAGCAGCAGCAGCCGATGCGGT
CCGATTTTCCCCCTCCACCTTCTCACCAGCAGCACCAGCAGTATCAGCAA
CACCAACAGTACCAGCCGCCGCAGCAGCACCTGCTTCCTCCTCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCACCAGCAGCCGC
AGCACCAGCAGCATCACCAACAGCAGCAGCCGCAACACCAACACCAACAC
CAACATCAGCAGCAGCAACTGCAGCCGCCGCAGCAGCCGCATCAGTCTCA
GGGGCAACCACCCCAACGAGCATCTCAGGAGCCACAGCAGCAACAGCCCC
CTCCTCACTCCCTCTCTCAACCTCAAGCCACCCCCACCCTCCCATCCCTC
CAAAATTTCTCCTCCTCCTCCTCCACGTCCATCTCCTCCACGTCCTCCTA
CCCCGGGCACCCACCCCTGCCTTCCTCCCCCTCCCTCTCCCGGGAACTGC
TCATGGCTCTCCGCCTCTTTTCTCAGGAGCTACAAAATGACTTGGCCCTT
GCTTCTGCCCGAGGTGAGGCAGCTGACACAGGAGCCCAGGCAGCCAGGGA
GGGCTTGCTTGCCCGTGCTCGTGCTCGAGATCCCACCCTCCTTCCAATTC
TAAGCCGCGCGTTGTTGGAGGGGATCAAGCCCGCGTCGCCCTTGGTGGTG
GTACCTCAAGGGGAAGGGACGGTAGGGGCCAGGGCGGAGGCAGTGAAGGC
TGAGGCGAATGAAGTGTTGGTTTGGCACCTGCAGAATAAGGCGTTGGAGG
CCCTGGTGGAGGTATGGAGGGAGGGAAGAGGGGCAAAGAAGGCGAAGCAG
CATGAGGAGGAGGAAGGAGGAGGAGGAGGAGGAGGAGGCGCGGATGGTGG
AAAGGAAGGGGGTAAGGAGACAGGGAAGCAGGAGGAGAATAACCAAATAG
GGTCCAAAATGAAGAAGGAGGTGGTGGAGGAGGAGAAGGTGGAGAAACGG
AGGGAGGAAAAGGAGATGGAGTAATTGCAAAGCAGAGAGGAAAGTTTTGC
TGGTGGTTTTGACATGCTATGCTATATTTTTTATAAAAGAGGATTTGTGG
TTTTAATATTTAGACTGGTAAACTAGTATATGGTTTTGATACTCGTGTTT
AAGCGATACATACTTGAGAAGGATATGGAGGGCGGTGCGACGGAGTGGGA
AAAGAGCAATCGCAGAGAGGGCGTGAAGTATTGAGTAAACCAGCGATCAG
GGGGAGGGAGAGAGACAGACAGAGAGGGGGGTGAGGTTATGAGCAAGAGG
CACCACATATTGGGCAAAAGCAGGAGCGGTAGCAGCAACAACAGGACACT
CGCAAGGATAAGAAACAGCGAAAAGATTCACAAGGGAAGAGACCGATTCG
GGAGTAAGAGGAGCCTCAAGAAAGATGGGGGAGAAGAGAAAAAAGATGCA
AAATGACAAGAAGAAGAAATTGACACGCGGGAAAGGAAAAGACGTGCGAG
AGAGATAAAGAGTACCTGCACGCTCTCACGTAGAATGGACTGGAGGTAGT
AGTGGTGATAAGGACTCGGGTCTCCCTACTTCACGCGTATGTCGGAGGAG
CGTATTAAAAGGGTATTAGAATGATCATATGCCACTTATGAGTCTATATT
TCGCAAATGTGAGATATACATTCACCCGCACGTTATGATGCCCACGCGGG
GGATTTATCACTGGTGGGAAGTGGCGCGTGACAGCCTTAACGCCAATCTC
ACCACGGTCGACAAAACATCATGATGGCCCAAGAAAAAAAGAATGAAGAA
GGGGAACAAAGACAGCAGA
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protein sequence of NO26G00400.1

>NO26G00400.1-protein ID=NO26G00400.1-protein|Name=NO26G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1281bp
MSSRRSAIAAAAASSGGPATTGSNDNNIYNSNDDDNGNNMKGQGGGQAMK
EEKEKEEGSGGEEREKVESEGGGRTGAEGGKDQAEADDVRRSHRRRSLSA
RMAASSSSSSLASSSAVHEAATAGTGGGGSPSLPSSHPHSGDASIASSSD
SISSFSSSSAARPNRENSPPPSPPTRHPSSSGHEARSDGSHGPPPPPSSF
ASSYPNIPPLPLPIPPPPPPPPSGQGQQSLFPTSMPFLPHLPHDAPPPPN
ADGTSSHHLPHAYPPFPPPPHPPSESLYQQQQQQQQHPEHPLSDDDDEDD
DGSGGGGGGGREGGKSGFRVDREASSDPRKKCGQDGCNRRYRRPGIYCAK
HGGGRCEWPGCLLMHTGKEGERYFCRKHLGRNDLSNLAVREERQEQRIGK
RIAANVYIVPSPGCSLPVASSFGPSAITSATGTRWSTYCIPLGGRKANFK
RRNPLGGPDILVPGAHLPYRRDRLCREVKCTYRYRSPGFLCERHGGDGSW
RGGGGFGAAAQAVVAAGGKGKKGAKGKAKVRGRKKGGGAGGAGGAGGAGK
GQKRGVKGKRGKKGDEEEEEDEEDDDRMENEEEEEEEEEMAGRFAPMESG
EGRGRVGRRDGGRGGVATTSMQRALGHGGGAGRKSRSGRTPGHKAGGEGG
GGGGGLGALLSAIQDYDEEEEEEEDDDIDHMDEDEDEEEEERRHQPLNHP
PSLPPSALPAVPLPSSHSNSNISSNNATSSPTKPLQRPSSIPSSLPATGM
SALPSSLPNSAHPSSISSMTTSQAAAGALAPHDPSSRRPKTDGEGGGGGI
GMTASYPFPLPPPPLHYHNHLQPPYGHPQQHQQHQQGPYQQPQHQQFHPH
YMQHQHHHPPPYGQQQHQQQLQQPGVYPPYAYGAYPPHPTHPPPPPPHSD
YASFQPSSSHISMTPQQQQQQQQQQQQYHNHYMNHQQHQQHQQHYHHHSQ
QQQPMRSDFPPPPSHQQHQQYQQHQQYQPPQQHLLPPQQQQQQQQQQQQQ
PQHQQPQHQQHHQQQQPQHQHQHQHQQQQLQPPQQPHQSQGQPPQRASQE
PQQQQPPPHSLSQPQATPTLPSLQNFSSSSSTSISSTSSYPGHPPLPSSP
SLSRELLMALRLFSQELQNDLALASARGEAADTGAQAAREGLLARARARD
PTLLPILSRALLEGIKPASPLVVVPQGEGTVGARAEAVKAEANEVLVWHL
QNKALEALVEVWREGRGAKKAKQHEEEEGGGGGGGGADGGKEGGKETGKQ
EENNQIGSKMKKEVVEEEKVEKRREEKEME*
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Synonyms
Publications