NO26G00160, NO26G00160 (gene) Nannochloropsis oceanica

Overview
NameNO26G00160
Unique NameNO26G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2036
Alignment locationchr26:52260..54295 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:52260..54295 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO26G00160 vs. NCBI_GenBank
Match: EWM27837.1 (hypothetical protein Naga_100074g8 [Nannochloropsis gaditana])

HSP 1 Score: 120.9 bits (302), Expect = 5.100e-24
Identity = 76/171 (44.44%), Postives = 98/171 (57.31%), Query Frame = 0 
Query:   49 PLATCLPPSLDVSIQACSTINPDDYFKNVIAKAGNGGQAGTLRGKPTRFTLILVPRQIQPSPALQPSLDLRIDLSSFLDVKTAQMKRPQGSSAITPVIDRDLGTVTWNNIGAALLGAGSRKAVPQKLRFTIKAVLASDIPKG--IKIKAYLLDDQN-VCEVMVGEEEVLVR 217
            P ATCL          CS   P  YF  + A   N  +AGT  G+  ++ L LVPR++QPSPAL PSLDL + +S +L+VK A +K    +      IDRD   VTW NIG  L G G++K VPQ L FT+ AVLA +      I I+AYL D  N +C V+V E +VLV+
Sbjct:  168 PNATCL--------SKCSDFLPAAYFHKITATV-NRAKAGTRPGRRLKYKLTLVPRKVQPSPALLPSLDLSLRISPYLEVKKATLKTTDPALKHAE-IDRDADLVTWQNIGGPLFGVGTKKGVPQSLTFTMVAVLAKNAQTAADIGIQAYLSDLNNGICGVLVAETDVLVK 328
The following BLAST results are available for this feature:
BLAST of NO26G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27837.15.100e-2444.44hypothetical protein Naga_100074g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL051nonsL051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR086ncniR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G00160.1NO26G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|380114gene_10617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G00160.1NO26G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G00160 ID=NO26G00160|Name=NO26G00160|organism=Nannochloropsis oceanica|type=gene|length=2036bp
CCCCGGTGTGCCTCTCGGTCCCTCCCAAAATTTCGAGGAGATGTTCTGCT
CCGTCACTATTCTGTTTGTGTCCTTGTGACTCGGGGGCTGCGACTTGAGA
CAATCTTACCCCAAACTATTAAGACCGCTAGAACTGTCGTTTGGTGGGCC
AAGGCCCATTTTTGCCCCATTTTTTGCGCGCTTCGCTTCGTGGCGGCTTC
TTTGTTCTGTTCTGATTTCTTCCTGCACTGCACTGCACTGCACTGCACAT
ATGTGCACTGCATTGGTATGTAAGACAGAGCGGTACATCTCCAAGAACAC
GCCTCCCTCACGGCCTTAAACCCCATTTCAATGCCGCCCTGATTGCTGTA
GTGCTTTGTACCTTGTACATTTTTTCGCAGGAGTTCTTGCAGACTCTCAC
AGCAGCTCGTTCGGGAGTCGGTGCAAGTACCAGGGATGCCTAGATGCAAG
GGCCAGCGGGCCAACAACGTAGAGGATGAACCGCACAACTTGCAGAATAC
TCTTGGTCTTTTTTCCACCCTTGTGCGACTGTGGACTGCATGCTCCCTAC
GTCCTTTGGCCATCTGTCTGCCTTGATTTTGGCCCATCTTCTTTCAAATA
CGACACACACCACATCCTCTTGACACCCCAAGGTGCCTTGCCAGCATTCA
AATACCACCGGATCCTCTTGAGCTGCATTTGTGAAGGTGGCGTCTCATTG
CTCGGCCTCCAGCCTTTTCCCCAGCCGACTCGGAATGGAATTAAAGAGCC
TCTGCCATATTTCCAAATCCAGGACGAGGGATAGGAGACGCCACCGGATG
CCGTCGCATTTTGGAATCGTTGGGGAAATTTGGAAGCTTGCAGCTGGAAA
CTTCGTCAGAAACCATGTGAATGTACAGTGGTTGATAGGACGCTGAAGAC
CGTTAAATGGAACAACACTTTTCGAAATTTAAGGCATTTACTTTGTCATG
CTATGCACCTAAACCACATATGACACAGAAACATGGTGAGCGGCAACTAT
CATACACTTCTCACTTTCTTTATGGTGGTCGCTCTTGCGTTCTCGCACGG
CCAGCACCGACGACACACGCGAATGGGCACCGCGGCCATGATCTCTACGT
TGGCAACTCTCGGGGCCCTCTCGCTGCCTTTAGCCACCTGCCTCCCACCC
TCCCTTGATGTCTCTATCCAGGCCTGTAGTACCATTAACCCAGACGACTA
CTTTAAGAACGTCATTGCCAAGGCTGGGAATGGTGGTCAGGCGGGCACTC
TCCGCGGCAAACCTACGCGTTTTACGCTGATCCTTGTCCCTCGCCAGATA
CAGCCTTCCCCGGCACTCCAACCTTCTTTGGACCTACGCATCGACCTTTC
CTCATTCCTGGACGTGAAAACAGCCCAGATGAAGCGGCCCCAGGGCAGTT
CTGCTATCACGCCAGTCATCGACAGAGATCTCGGAACGGTGACGTGGAAC
AATATTGGGGCTGCCCTCCTGGGTGCGGGTTCCAGGAAGGCGGTGCCTCA
GAAGCTCAGGTTCACTATTAAGGCAGTTTTGGCCAGCGACATACCTAAAG
GCATCAAAATCAAGGCCTACTTGTTGGACGACCAGAATGTTTGCGAGGTG
ATGGTGGGGGAGGAGGAAGTTCTTGTGCGTGACCCCGAGGGATTCAAGGC
CATCAGGTCGGGAGAAGGGCAGTGAGGACGAGAAAAAGTCAGGATGTGCG
AGGGGAAAAGGAGGAAGAGGAGATGGTAGATCTCGAAAAGTAGGGAGAAA
CCAAGCAATTTCGTTCAATCGAGGCGCACGGGAAGCTTCCCATGGGAAAA
GCCAACACCAGAAGTGGAAGAAATCGAAAAGAAAGGAGATGAATGAAGTA
CTATATGGGGATGGGGATGTATATTATAATTCTGTACAAGTCAAAAGGTG
ATGAACAGGAAGATATAGCAGAAAACGGGGTTAAAACTTTCTGCATGGAT
GATCTCGAAACCTGCCGAGAAGAAAGAAGTGAAGGGTGAATCCTGCGATC
GCTCTTTCGTATCCACTTTAAGAATTTGAAAAAACA
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protein sequence of NO26G00160.1

>NO26G00160.1-protein ID=NO26G00160.1-protein|Name=NO26G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MVSGNYHTLLTFFMVVALAFSHGQHRRHTRMGTAAMISTLATLGALSLPL
ATCLPPSLDVSIQACSTINPDDYFKNVIAKAGNGGQAGTLRGKPTRFTLI
LVPRQIQPSPALQPSLDLRIDLSSFLDVKTAQMKRPQGSSAITPVIDRDL
GTVTWNNIGAALLGAGSRKAVPQKLRFTIKAVLASDIPKGIKIKAYLLDD
QNVCEVMVGEEEVLVRDPEGFKAIRSGEGQ*
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Synonyms
Publications