NO25G02070, NO25G02070 (gene) Nannochloropsis oceanica

Overview
NameNO25G02070
Unique NameNO25G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2546
Alignment locationchr25:651322..653867 +

Link to JBrowse

Properties
Property NameValue
DescriptionCullin 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:651322..653867 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0031625ubiquitin protein ligase binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016159Cullin_repeat-like_dom
IPR001373Cullin_N
Vocabulary: Cellular Component
TermDefinition
GO:0031461cullin-RING ubiquitin ligase complex
Homology
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: ETK74397.1 (hypothetical protein L915_18816 [Phytophthora parasitica] >ETL27827.1 hypothetical protein L916_18712 [Phytophthora parasitica] >ETM34268.1 hypothetical protein L914_18630 [Phytophthora parasitica])

HSP 1 Score: 82.0 bits (201), Expect = 5.300e-12
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:   49 FTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAER 174
            F   YT C++M TQR+P+N++++LY  +  +  +Y +Q V   +E+  + D+  L EL  RW  +K M+    R F+ LDRYY++H+ L  L  AG  +F R      V+ RVK A++     ER
Sbjct:   46 FMPIYTTCYNMCTQRSPYNFSEQLYDRHGQTFDTYLEQKVLPSLEQ--AHDEFFLQELVKRWTNHKLMMKWMTRFFMYLDRYYVKHHSLPTLDDAGLQSFDRM-VFQKVKERVKDAMIELIEKER 167
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: XP_002182637.1 (CULlin protein 1 [Phaeodactylum tricornutum CCAP 1055/1] >EEC45924.1 CULlin protein 1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 81.6 bits (200), Expect = 6.900e-12
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 0 
Query:   47 RDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGM-ERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAERE 175
            R++ + YT C+DM TQR+P+NW+ ELY+ +  ++  Y    V   + +++     TLL EL  RW  ++ M     + F  LDRYY++H+ L  L  AG   F R      ++     AIL     ERE
Sbjct:   46 REYVQIYTTCYDMCTQRSPYNWSRELYQRHGETIERYLASTVIPALRDKTGQGGTTLLTELQHRWGDHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLRCF-RTHVYDEMKRETTAAILGLINDERE 173
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: XP_024581662.1 (cullin protein 1 [Plasmopara halstedii] >CEG45293.1 cullin protein 1 [Plasmopara halstedii])

HSP 1 Score: 81.6 bits (200), Expect = 6.900e-12
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 0 
Query:   49 FTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAER 174
            F   YT C++M TQR+PFN++++LY  +  +  +Y +  V   +E+  + D+  L EL  RW  +K M+    R F+ LDRYY++H+ L  L  AG  +F R      V+ RVK AI+     ER
Sbjct:   46 FMPIYTTCYNMCTQRSPFNFSEQLYDRHGQTFDTYLEHKVLPSLEQ--AHDEFFLQELVKRWTNHKLMMKWMSRFFMYLDRYYVKHHSLPTLDDAGLQSFDRV-VFQKVKVRVKDAIIELIEKER 167
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: CBJ32430.1 (CULlin protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-11
Identity = 47/138 (34.06%), Postives = 74/138 (53.62%), Query Frame = 0 
Query:   39 ERRTN--YTCRDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAERE 175
            ++RT+  +T +DF   YT C+DM TQR+P+NW+++LY  +  +++ Y    V   +       + LL EL  RW+ +K M     + F  LDRYY++H+ L +L  AG   F +      V+  V  A+L     ERE
Sbjct:   36 DKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALRE--QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHF-KTLVYDVVKSTVVNAMLDVINKERE 170
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: XP_009032327.1 (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >EGB12671.1 hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens])

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-11
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = 0 
Query:   47 RDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRG----AGAEREDR 177
            +++ + YT C++M TQR+P+NW+++LY+ +  ++  Y  + V   +    +D   LL EL+ RWA +K M       F+ LDRYY++H+ L  L  AG   F        V + VKK ++        AER+++
Sbjct:   44 KEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICDYLTKTVLPALRHQHND--FLLTELTKRWANHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHF-----KTLVYNEVKKDVVNAMIGLIDAERDEK 170
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: ETI34038.1 (hypothetical protein F443_19394 [Phytophthora parasitica P1569] >ETL81075.1 hypothetical protein L917_18538 [Phytophthora parasitica] >ETO62842.1 hypothetical protein F444_19342 [Phytophthora parasitica P1976] >ETP03926.1 hypothetical protein F441_19215 [Phytophthora parasitica CJ01A1] >ETP32080.1 hypothetical protein F442_19165 [Phytophthora parasitica P10297] >KUF79208.1 Cullin-1 [Phytophthora nicotianae] >KUF95543.1 RAC family serine/threonine-protein kinase [Phytophthora nicotianae])

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-11
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:   49 FTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAER 174
            F   YT C++M TQR+P+N++++LY  +  +  +Y +Q V   +E+  + D+  L EL  RW  +K M+    R F+ LDRYY++H+ L  L  AG  +F R      V+ RVK A++     ER
Sbjct:   46 FMPIYTTCYNMCTQRSPYNFSEQLYDRHGQTFDTYLEQKVLPSLEQ--AHDEFFLQELVKRWTNHKLMMKWMTRFFMYLDRYYVKHHSLPTLDDAGLQSFDRM-VFQKVKVRVKDAMIELIEKER 167
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: XP_002907623.1 (Cullin family protein, putative [Phytophthora infestans T30-4] >EEY64187.1 Cullin family protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-11
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:   49 FTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAER 174
            F   YT C++M TQR+P+N++++LY  +  +  +Y +Q V   +E+  + D+  L EL  RW  +K M+    R F+ LDRYY++H+ L  L  AG  +F R      V+ RVK A++     ER
Sbjct:   46 FMPIYTTCYNMCTQRSPYNFSEQLYDRHGQTFDTYLEQKVLPSLEQ--AHDEFFLQELVKRWTNHKLMMKWMTRFFMYLDRYYVKHHSLPTLDDAGLQSFDRM-VFQKVKVRVKDAMIELIEKER 167
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: GAX16533.1 (cullin 1 [Fistulifera solaris])

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-11
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = 0 
Query:   47 RDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGM-ERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAEREDR 177
            +++ + YT C+DM TQR+P+NW+ ELY+ +  ++  Y   +V   + ++       LL EL  RW  ++ M     + F  LDRYY++H+ L  L  AG  +F R      ++    +AIL     ERE +
Sbjct:   43 KEYVQIYTTCYDMCTQRSPYNWSRELYQRHGETIEQYLNDYVLPALKDKPRQGSNILLTELQHRWKNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLRSF-RTHIYDVIKADTTQAILSLINDEREGK 172
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: PIA61528.1 (hypothetical protein AQUCO_00300808v1 [Aquilegia coerulea])

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-11
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 0 
Query:    1 MAGRRNPPEPRDWDEGFAALTTLWTEPCFAAYSSQQPMERRTNYTCRDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAERE 175
            M+    PP P  W +G+  +   +T+         +P     ++T +++ + YT+ ++M TQ+ P ++++ELY GY+  +  Y    V   +  ++  D  LL EL  RW  +K M+    R F  L+RY++  N L  L  AG   F  E     +Q +V+  IL     ERE
Sbjct:    1 MSTSPEPPGPVKWSDGWKEMEIGFTKLVRILDGYDEP-----DFTAKEYIQLYTVVYNMCTQKPPDDFSEELYNGYIQLIHDYVPNKVLPSI--NSKHDVFLLEELEKRWLNHKVMLKWLSRFFQYLERYHIPRNSLRTLKDAGHNCF-LEMVYEKIQVQVRNVILSLIDRERE 166
[Close]
BLAST of NO25G02070 vs. NCBI_GenBank
Match: XP_008604965.1 (hypothetical protein SDRG_01226 [Saprolegnia diclina VS20] >EQC41251.1 hypothetical protein SDRG_01226 [Saprolegnia diclina VS20])

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-11
Identity = 43/128 (33.59%), Postives = 66/128 (51.56%), Query Frame = 0 
Query:   47 RDFTEAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQTLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWREGCSPSVQHRVKKAILRGAGAERE 175
            + +   YT+C+DM TQR P+NW+ +LY  +  +   Y +Q V   ++     D+ LL EL  RW  +K M     + F+ LDRYY++HN L  L  +G   F +      ++  V  A+L     ERE
Sbjct:   44 QSYMPIYTICYDMCTQRTPYNWSAQLYTRHGETFTEYLRQKVLPELQN--QHDEFLLNELHRRWQNHKLMNKWMSKFFMYLDRYYVKHNALPTLAESGLNAF-KSVVFEGIKKDVVDAMLELVEKERE 168
The following BLAST results are available for this feature:
BLAST of NO25G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETK74397.15.300e-1236.00hypothetical protein L915_18816 [Phytophthora para... [more]
XP_002182637.16.900e-1234.11CULlin protein 1 [Phaeodactylum tricornutum CCAP 1... [more]
XP_024581662.16.900e-1236.80cullin protein 1 [Plasmopara halstedii] >CEG45293.... [more]
CBJ32430.11.200e-1134.06CULlin protein 1 [Ectocarpus siliculosus][more]
XP_009032327.11.200e-1132.09hypothetical protein AURANDRAFT_52007 [Aureococcus... [more]
ETI34038.11.200e-1136.00hypothetical protein F443_19394 [Phytophthora para... [more]
XP_002907623.11.200e-1136.00Cullin family protein, putative [Phytophthora infe... [more]
GAX16533.11.500e-1132.06cullin 1 [Fistulifera solaris][more]
PIA61528.11.500e-1128.74hypothetical protein AQUCO_00300808v1 [Aquilegia c... [more]
XP_008604965.12.600e-1133.59hypothetical protein SDRG_01226 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL047nonsL047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR045ncniR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR073ngnoR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO25G02070.1NO25G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604190gene_8831Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO25G02070.1NO25G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO25G02070 ID=NO25G02070|Name=NO25G02070|organism=Nannochloropsis oceanica|type=gene|length=2546bp
ATGGCCGGACGCCGGAACCCTCCTGAGCCACGGGACTGGGACGAAGGCTT
TGCCGgtatgtggaatgggagggataagagaggaagtgaaggtagagata
ctgctataatatgatatgcgattcgccgtcatgatctgccagcacccaaa
cccgatatgctgtctaagttgcgtgggctacggctgcctttctctgtgtg
tcatcacttacttgcgtcccatccttctacaagccctatcatcgccagcc
aacccacccttcccacccttcttccatccttcatatattctttcaagCCC
TTACAACCTTGTGGACAGAGCCCTGTTTCGCTGCCTACAGCTCACAGCAG
CCGATGGAACGTCGGACCAACTACACATGTCGGGATTTTACCGAGgtagg
gaggtagggacggaaggagggaggaaacgcaagtgaccaagaaaaacggt
agcaagggtgacgccgcatctctttcgtcctcttctggctgtgagagagt
cgtcattccagtccgtccccctctccctctttccctccctcccttcctcc
agGCGTACACCCTCTGCTGGGACATGAGCACGCAACGTGCCCCCTTTAAT
TGGGCGGATGAGCTCTATCGCGGCTACCTGCATTCTCTGGCTTCTTATGC
GCAGCAGCATGTATGTCGTGGGATGGAGCGGTCGGCCTCAGgtaggaggt
tgaaaaagcttggatggaaggaaatgagggaggacgcagaataagaaaag
gggcatgggaacaaatgcatgcaggtgagtatgcatctggatagactcaa
actatctgtctcaagcacctttttaccctctccctctccctccctcccac
cccccctttctctctcccgccctcccccagACGACCAGACCCTCCTCCTG
GAGCTCTCCGCTAGGTGGGCGCAGTACAAATGCATGGTCAACGACTATCA
CCGCGTCTTCATCATCCTTGACCGGTACTACCTGCGCCACAACGGCCTGG
TCGCCTTGGGACCTGCGGgtaagttcactctccctctttctctcctttcg
tcgcttcccctctccctccaacgggcgcatgtttgtcatcttcgaagcct
actacctccactgctatggcccagcccgcggccttggactctccacgtat
gtgttttccattgcccacatctactttctccctccatccctccctaccta
cctcccgcctcctcagGGCGGGCCACCTTCTGGCGAGAGGGGTGCAGCCC
CTCGGTCCAGCACCGAGTCAAGAAAGCCATCCTTCGAGGCGCAGGTGCAG
AGAGGGAGGACAGAAGGGAGGAAAAGAGGGAGAAGGAGGGGAGGGAGGAG
TGTGGGAAGAGGTTGAAATTCGGTGCTCTGTCATGTTCGTGCAGCTTTTC
CTCCTCTCCTCCCTCCTCTCCCCCCTCCTCCATGTCCTGCCGGCCATGCA
GGCAGTGGCGGGAGCAGCAGCAGGAGCAGAGAAAAGAGACAGAGAGGGGG
TTAGGAGGTGAGTATAGAGGAGCGGCACCGATCGAGGAACACCTGAGGAG
GCCCCTCACTGGTATGGCCCTCGCCGCTCTTGTGGAGgtaagggcgggta
tctcacatttaaaacctccctttcctctctccttccttcatccttcgacg
ccctgcccgtaccgccttgtctactgattctccctatctctccctcctac
cttccttttttctgtccttcctttcagATATCACCAGAGGCTGCAAAGGA
GGTCGGTGTGAAGCTGAAGAAGGAGCACGGCCTCGATAGCGCCGACGTGC
AAGGATGGGAGAAGgtaggggagaaaggagggggaaagggagcaaagggg
gtagggaaggaaaggaagcaaggttagaacggatcgaaagtacagcgtcc
tgtgacagttaaccctctttcctctcattctccgcatttctcgtccttct
tttctcgaatatcccgttcctcggtttccgtatcccctgtccaccctccc
ctcttccctcccgctccccagCCCTCGCTCCAGTCTTCCCTCTTCCCCCG
TCTCTCCTCAGGCGTCCTACCACTGGGCCCCTCCCAGGTCTCCATGGTCT
ATCGCTACTACCTCCTCAAGCTGCGGGTGCTGAGCGAGAAAGGGGCGAGA
GGTGAGGTAGGTGCGGAGGAGACAGGAGGGTACCCATATTCAGTTGAGCC
CTGTCGAGTGCAGGTGGACGAAGGAAAAATGAAAGGGAGGGAGGAGGAAG
ATGAGGTCGTGCGCTCAGGGTTGTCAACCTCGCCCGGTGCGGGCAGAGGC
GGAAAAGGAGGGGGAGGGGGAGGATGCGGAGGAGGAGCAAGCAAGCGAGG
GGTGGGGGAGCAGGTCGAGAAAGAGGAGGATACGACAGCCGGTTCGAGAT
ATGCTTTTCAGGGGGAAGGAAAGAGCAGGAAGGAGGGCCGGAAAAAAAGA
GAGTTATGCCAGAGGGTGTTGAAGGCAGCGGTGTACGGGATGGGCGACGA
CGTTTTTCAGGAGCTGTGTGACTTTGTCCATTTACAGGACACGTAG
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protein sequence of NO25G02070.1

>NO25G02070.1-protein ID=NO25G02070.1-protein|Name=NO25G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MAGRRNPPEPRDWDEGFAALTTLWTEPCFAAYSSQQPMERRTNYTCRDFT
EAYTLCWDMSTQRAPFNWADELYRGYLHSLASYAQQHVCRGMERSASDDQ
TLLLELSARWAQYKCMVNDYHRVFIILDRYYLRHNGLVALGPAGRATFWR
EGCSPSVQHRVKKAILRGAGAEREDRREEKREKEGREECGKRLKFGALSC
SCSFSSSPPSSPPSSMSCRPCRQWREQQQEQRKETERGLGGEYRGAAPIE
EHLRRPLTGMALAALVEISPEAAKEVGVKLKKEHGLDSADVQGWEKPSLQ
SSLFPRLSSGVLPLGPSQVSMVYRYYLLKLRVLSEKGARGEVGAEETGGY
PYSVEPCRVQVDEGKMKGREEEDEVVRSGLSTSPGAGRGGKGGGGGGCGG
GASKRGVGEQVEKEEDTTAGSRYAFQGEGKSRKEGRKKRELCQRVLKAAV
YGMGDDVFQELCDFVHLQDT*
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Synonyms
Publications